Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016007.1

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Reverse (-)

15148 .. 20586

Gene Structure 5439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016007.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3039 bp

atggagaacggctccaaaagacgaagcgaagtagaaatcaaagttcttgacaaggtcggagaagtgatctccgaattacacaaggccaagcacgcagaccaagtcatttccgcgctgcactccctcgctattcttctcttccctctcgattcttctctcttctcaggtgctattggtgagcggtgcagagagcaggttcttagtgttgaagctccttcagctgatgagagaagcgagttgtggaagactttttatcgaggagctgcattcagaacatttgctcgggttttgttaactgatgtcgcttccaattggcttgcttgtttcccgttttcagcacggaaacatgtgtatgatgtcttctttgttaacggacttgccactgaggttgttcagattttggtcccttgtctacagcaaaatggaagtggtgatgttgatgtcaatgctgttcactccaatactgaaaggttacttgtactttgcttggttgaaaataatggggtgctccagatggctagagaatttggtggctctttccagtctgaagattatacaaatgaaaatctcatgtcaaatgtatctagagtggcacagattgttgcatctatacctgacaaagcacaattgagagccccgacttcactttcagcacatttgttcttcaagcaagttaccattcagcttctttctctagcagaagaagggaataaggagatattagatggcttccatgaaagtaacatgaatgggaccttactgtttgttggggaaacattttctcgtatatgtcgacgtggatctgtagatgtgcttttaagtgaaataatcccaaggattcttagacatgtccggagtttgtcatcatcaactatggactcactaggttcagatgttctggaatcagaccctggttcccaattttggttgaatcttattcaagcaatcaaagattcatatgctgtggaaagaatgtctgagcaacttttacatcagcttgcaactgaacaagtgggtgatattgaagcttactggattctttggctattatttcatcgggttttcaagagccaaatatcagcgaggtccatgtttactgacaagtttttagtctggaaagtatttcctatttgttgccttcgatggatccttcaattttccgtccttgaatgcgcaccagattctaattcacttgctaaaggtcataatacccgcaatttcttagacacgttacagcatctggtagcagtatggtctaaaagggagtttgtacaatcagccccagtcgagcagcaaatatatgtaactgctggtgtcggcctttccctagagcagatgtctaaggaggaattagatgagacaaaggatgtgctgcattcaattctccaaggagtgagctgtaggcttgaaagccctaatcatttagtacggaagatggctagctctgttgctttagttttctccaaggtgattgatccaaaaaatcctctataccttgatgacagcctaactggggagactattgactgggaatttgggttgtctactcctaagaaaggtaccttgggaacctcaagttgcttagaagaaggtattaacaaatccaaaatatctaaaacctcagtgctggaagatggcttaaaccacaaagccagtgggaagagtaaaagtaggaaattatctgaaacaaagttggttgatccagacgagatcattgatcctgttacactgaattatgattcagtctctgatgaagatgacaacaatgatagtgaggattctgatgtctcaagtgactcatctttacagccatatgatttatcagatgatgacacagatttgaaaaggaaattttcacagttggttgatgtagttggggcacttcggaaatctgatgatgctgatggggtggagaaggctcttgaagtttctgaaaaacttgtgcgagcatcacctgatgagcttaagtttgtagcaagtgatctcgtgagaaccctggtacaggttcgttgctctgacttggctatagaaggtgaggaagattcagctgaagacaagagacaaagaacattggtcgctttgcttgtcacgtgtccattggagtctcttgaaactttaaacaaactactatattcacctaatgtggatgtcagtcagcgcttactgattcttgatgtaatgaccgagggggctgaggagcttgctgatactaaaattataaaggctaaacatcagactagggccctcatatcgaccacatcagagacacaagcttggttcttgcctagtgaaataggtcctcctggagctgacgcctggaaagagatttcagaaacaaattctttactgaactggacaaatcgttatcagagggaacttcccccaaagcctggtcagattaggagaggaaagacacgtcaatggagccttagatcagccaatgcaccaaaaagccaaatagaatggtcccataataagtttccagtgtatgcagcagcatttatgcttcctgccatgcaggggtttgataagagaaggcaaggtgtcgaccttcttgatagagattttatcgtcctgggaaaactcatctatatgctcggagtctgtatgaaatgtgcagccatgcatccggaagcatctgctctggctggccctcttctagatatgctaagctccagggagatatgttttcacaaggaagcatatgtcagaagatctaccctttttgcagcttcatgcgtattgctatcacttcacccctcttatgtagcaacctccttagttgaaggcaatactgaaatttctaacggacttgaatggattcgcacatgggcccttcatgtaactgaatcagacacagatagagagtgttattcgatggctatgaaatgtctgcaactccatgctgaaatggccctgcaagcttctcgagcactagagtcggcacaaagcacgtccaatgcaaagaatgttgttgggattccgtccaatctatccaagggaacaattatcatcccccactccaatgtgaaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

1012

Amino Acids

112.65

Weight (kDa)

5.38

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2219
Acc16I	TGCGCA	1 cut(s)	1174
Acc36I	ACCTGC	1 cut(s)	184
Acc65I	GGTACC	1 cut(s)	1559
AccB1I	GGYRCC	1 cut(s)	1559
AccB7I	CCANNNNNTGG	1 cut(s)	2390
AccBSI	CCGCTC	1 cut(s)	181
AccI	GTMKAC	4 cut(s)	412, 793, 1544, 2547
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	2 cut(s)	852, 2629
AciI	CCGC	3 cut(s)	111, 181, 1213
AclWI	GGATC	6 cut(s)	808, 1141, 1154, 1469, 1694, 1712
AcsI	RAATTY	5 cut(s)	524, 1532, 1850, 2338, 2799
AcuI	CTGAAG	3 cut(s)	201, 567, 2070
AcvI	CACGTG	1 cut(s)	2091
AcyI	GRCGYC	1 cut(s)	2313
AfaI	GTAC	5 cut(s)	480, 1272, 1428, 1561, 2001
AfeI	AGCGCT	1 cut(s)	2159
AfiI	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2390, 2520
AflII	CTTAAG	1 cut(s)	1964
AflIII	ACRYGT	5 cut(s)	346, 847, 1227, 2090, 2414
AjiI	CACGTC	3 cut(s)	797, 2417, 2955
AjnI	CCWGG	7 cut(s)	910, 1995, 2302, 2315, 2389, 2574, 2675
AjuI	GAANNNNNNNTTGG	2 cut(s)	1547, 1579
Alw21I	GWGCWC	2 cut(s)	510, 2935
Alw26I	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
AlwI	GGATC	6 cut(s)	808, 1141, 1154, 1469, 1694, 1712
AlwNI	CAGNNNCTG	3 cut(s)	911, 1240, 1748
Ama87I	CYCGRG	2 cut(s)	282, 2928
Aor13HI	TCCGGA	2 cut(s)	852, 2629
Aor51HI	AGCGCT	1 cut(s)	2159
AoxI	GGCC	6 cut(s)	84, 1318, 2241, 2650, 2832, 2913
ApaI	GGGCCC	2 cut(s)	2245, 2836
ApeKI	GCWGC	8 cut(s)	115, 263, 1291, 1372, 2492, 2495, 2618, 2729
ApoI	RAATTY	5 cut(s)	524, 1532, 1850, 2338, 2799
ArsI	GACNNNNNNTTYG	2 cut(s)	1517, 1549
Asp700I	GAANNNNTTC	1 cut(s)	2820
Asp718I	GGTACC	1 cut(s)	1559
AspLEI	GCGC	3 cut(s)	115, 1175, 2160
AsuHPI	GGTGA	8 cut(s)	188, 443, 1028, 1480, 1944, 2045, 2127, 2747
AsuNHI	GCTAGC	1 cut(s)	1439
AvaI	CYCGRG	2 cut(s)	282, 2928
AvaII	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2466
BaeGI	GKGCMC	3 cut(s)	1882, 2245, 2836
BamHI	GGATCC	1 cut(s)	1146
BanI	GGYRCC	1 cut(s)	1559
BanII	GRGCYC	3 cut(s)	637, 2245, 2836
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BauI	CACGAG	1 cut(s)	1985
BbrPI	CACGTG	1 cut(s)	2091
BbsI	GAAGAC	3 cut(s)	251, 352, 2058
Bbv12I	GWGCWC	2 cut(s)	510, 2935
BbvCI	CCTCAGC	1 cut(s)	2193
BbvI	GCAGC	8 cut(s)	102, 250, 1303, 1359, 2504, 2507, 2630, 2741
BccI	CCATC	7 cut(s)	508, 719, 1137, 1429, 1628, 1898, 2872
BceAI	ACGGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	4 cut(s)	2909, 2922, 2943, 2956
BciT130I	CCWGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
BcoDI	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
BfmI	CTRYAG	4 cut(s)	413, 804, 1399, 2025
BfoI	RGCGCY	1 cut(s)	2161
BfrI	CTTAAG	1 cut(s)	1964
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	2714
BisI	GCNGC	8 cut(s)	116, 264, 1292, 1373, 2493, 2496, 2619, 2730
BlpI	GCTNAGC	1 cut(s)	2669
BlsI	GCNGC	8 cut(s)	117, 265, 1293, 1374, 2494, 2497, 2620, 2731
Bme1390I	CCNGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
Bme18I	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2466
BmeT110I	CYCGRG	2 cut(s)	282, 2928
BmgBI	CACGTC	3 cut(s)	797, 2417, 2955
BmrFI	CCNGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
BmrI	ACTGGG	3 cut(s)	1277, 1521, 1537
BmsI	GCATC	6 cut(s)	614, 1246, 1888, 1958, 2635, 2645
BmtI	GCTAGC	1 cut(s)	1443
BmuI	ACTGGG	3 cut(s)	1277, 1521, 1537
BpiI	GAAGAC	3 cut(s)	251, 352, 2058
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	3 cut(s)	494, 2325, 2659
Bpu10I	CCTNAGC	1 cut(s)	2193
Bpu1102I	GCTNAGC	1 cut(s)	2669
BpuEI	CTTGAG	2 cut(s)	1558, 1774
BsaAI	YACGTR	1 cut(s)	2091
BsaHI	GRCGYC	1 cut(s)	2313
BsaWI	WCCGGW	2 cut(s)	852, 2629
Bsc4I	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2390, 2520
Bse1I	ACTGG	8 cut(s)	541, 1037, 1283, 1516, 1532, 1653, 2357, 2483
BseAI	TCCGGA	2 cut(s)	852, 2629
BseBI	CCWGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
BseGI	GGATG	4 cut(s)	1372, 2152, 2626, 3012
BseLI	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2390, 2520
BseMII	CTCAG	5 cut(s)	177, 375, 969, 1635, 2184
BseNI	ACTGG	8 cut(s)	541, 1037, 1283, 1516, 1532, 1653, 2357, 2483
BseRI	GAGGAG	2 cut(s)	273, 2210
BseSI	GKGCMC	3 cut(s)	1882, 2245, 2836
BseXI	GCAGC	8 cut(s)	102, 250, 1303, 1359, 2504, 2507, 2630, 2741
BsgI	GTGCAG	3 cut(s)	101, 205, 2637
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	6 cut(s)	86, 1320, 2243, 2652, 2834, 2915
BshNI	GGYRCC	1 cut(s)	1559
BsiHKAI	GWGCWC	2 cut(s)	510, 2935
BsiHKCI	CYCGRG	2 cut(s)	282, 2928
BsiSI	CCGG	2 cut(s)	853, 2630
BslFI	GGGAC	3 cut(s)	389, 766, 2452
BslI	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2390, 2520
BsmAI	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
BsmFI	GGGAC	3 cut(s)	389, 766, 2452
BsmI	GAATGC	3 cut(s)	266, 1175, 1375
BsnI	GGCC	6 cut(s)	86, 1320, 2243, 2652, 2834, 2915
BsoBI	CYCGRG	2 cut(s)	282, 2928
Bsp120I	GGGCCC	2 cut(s)	2241, 2832
Bsp1286I	GDGCHC	6 cut(s)	510, 637, 1882, 2245, 2836, 2935
Bsp13I	TCCGGA	2 cut(s)	852, 2629
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp1720I	GCTNAGC	1 cut(s)	2669
BspACI	CCGC	3 cut(s)	111, 181, 1213
BspANI	GGCC	6 cut(s)	86, 1320, 2243, 2652, 2834, 2915
BspCNI	CTCAG	5 cut(s)	176, 376, 970, 1634, 2185
BspEI	TCCGGA	2 cut(s)	852, 2629
BspFNI	CGCG	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	1443
BspPI	GGATC	6 cut(s)	808, 1141, 1154, 1469, 1694, 1712
BspT107I	GGYRCC	1 cut(s)	1559
BspTI	CTTAAG	1 cut(s)	1964
BsrBI	CCGCTC	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	8 cut(s)	541, 1037, 1283, 1516, 1532, 1653, 2357, 2483
BssNI	GRCGYC	1 cut(s)	2313
BssSI	CACGAG	1 cut(s)	1985
BssT1I	CCWWGG	5 cut(s)	833, 1387, 1464, 1563, 2997
Bst2BI	CACGAG	1 cut(s)	1985
Bst2UI	CCWGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
Bst4CI	ACNGT	2 cut(s)	762, 1860
Bst6I	CTCTTC	4 cut(s)	143, 164, 1655, 2661
BstACI	GRCGYC	1 cut(s)	2313
BstAFI	CTTAAG	1 cut(s)	1964
BstAUI	TGTACA	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	2091
BstC8I	GCNNGC	8 cut(s)	93, 318, 999, 1441, 1947, 2202, 2650, 2922
BstENI	CCTNNNNNAGG	2 cut(s)	1554, 2000
BstF5I	GGATG	4 cut(s)	1372, 2152, 2626, 3012
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	2161
BstHHI	GCGC	3 cut(s)	115, 1175, 2160
BstMAI	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 218, 2912, 2921, 2930
BstNI	CCWGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
BstNSI	RCATGY	2 cut(s)	350, 851
BstSCI	CCNGG	7 cut(s)	910, 1995, 2302, 2315, 2389, 2574, 2675
BstSFI	CTRYAG	4 cut(s)	413, 804, 1399, 2025
BstSLI	GKGCMC	3 cut(s)	1882, 2245, 2836
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	8 cut(s)	102, 250, 1303, 1359, 2504, 2507, 2630, 2741
BstV2I	GAAGAC	3 cut(s)	251, 352, 2058
BstX2I	RGATCY	3 cut(s)	800, 1146, 2714
BstYI	RGATCY	3 cut(s)	800, 1146, 2714
BsuRI	GGCC	6 cut(s)	86, 1320, 2243, 2652, 2834, 2915
BtrI	CACGTC	3 cut(s)	797, 2417, 2955
BtsCI	GGATG	4 cut(s)	1372, 2152, 2626, 3012
BtsIMutI	CAGTG	5 cut(s)	381, 1629, 1660, 1727, 2490
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	8 cut(s)	93, 318, 999, 1441, 1947, 2202, 2650, 2922
CaiI	CAGNNNCTG	3 cut(s)	911, 1240, 1748
CfoI	GCGC	3 cut(s)	115, 1175, 2160
CseI	GACGC	1 cut(s)	2321
Csp6I	GTAC	5 cut(s)	479, 1271, 1427, 1560, 2000
CspCI	CAANNNNNGTGG	4 cut(s)	370, 405, 1636, 1671
CviQI	GTAC	5 cut(s)	479, 1271, 1427, 1560, 2000
DraI	TTTAAA	1 cut(s)	2118
Eam1104I	CTCTTC	4 cut(s)	143, 164, 1655, 2661
EarI	CTCTTC	4 cut(s)	143, 164, 1655, 2661
Eco130I	CCWWGG	5 cut(s)	833, 1387, 1464, 1563, 2997
Eco24I	GRGCYC	3 cut(s)	637, 2245, 2836
Eco47I	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2466
Eco47III	AGCGCT	1 cut(s)	2159
Eco57I	CTGAAG	3 cut(s)	201, 567, 2070
Eco72I	CACGTG	1 cut(s)	2091
Eco88I	CYCGRG	2 cut(s)	282, 2928
EcoNI	CCTNNNNNAGG	2 cut(s)	1554, 2000
EcoO109I	RGGNCCY	5 cut(s)	753, 2241, 2242, 2297, 2833
EcoRII	CCWGG	7 cut(s)	910, 1995, 2302, 2315, 2389, 2574, 2675
EcoT14I	CCWWGG	5 cut(s)	833, 1387, 1464, 1563, 2997
EcoT22I	ATGCAT	1 cut(s)	2628
EcoT38I	GRGCYC	3 cut(s)	637, 2245, 2836
ErhI	CCWWGG	5 cut(s)	833, 1387, 1464, 1563, 2997
FaqI	GGGAC	3 cut(s)	389, 766, 2452
FauI	CCCGC	1 cut(s)	1220
FauNDI	CATATG	3 cut(s)	958, 1813, 2704
FblI	GTMKAC	4 cut(s)	412, 793, 1544, 2547
Fnu4HI	GCNGC	8 cut(s)	116, 264, 1292, 1373, 2493, 2496, 2619, 2730
FokI	GGATG	4 cut(s)	1379, 2159, 2613, 2999
FriOI	GRGCYC	3 cut(s)	637, 2245, 2836
Fsp4HI	GCNGC	8 cut(s)	116, 264, 1292, 1373, 2493, 2496, 2619, 2730
FspAI	RTGCGCAY	1 cut(s)	1174
FspI	TGCGCA	1 cut(s)	1174
GlaI	GCGC	3 cut(s)	114, 1174, 2159
GluI	GCNGC	8 cut(s)	116, 264, 1292, 1373, 2493, 2496, 2619, 2730
GsuI	CTGGAG	3 cut(s)	494, 2325, 2659
HaeII	RGCGCY	1 cut(s)	2161
HaeIII	GGCC	6 cut(s)	86, 1320, 2243, 2652, 2834, 2915
HapII	CCGG	2 cut(s)	853, 2630
HgaI	GACGC	1 cut(s)	2321
HhaI	GCGC	3 cut(s)	115, 1175, 2160
Hin1I	GRCGYC	1 cut(s)	2313
Hin6I	GCGC	3 cut(s)	113, 1173, 2158
HinP1I	GCGC	3 cut(s)	113, 1173, 2158
HincII	GTYRAC	4 cut(s)	294, 370, 794, 2548
HindII	GTYRAC	4 cut(s)	294, 370, 794, 2548
HindIII	AAGCTT	3 cut(s)	1026, 2271, 2922
HpaI	GTTAAC	2 cut(s)	294, 370
HpaII	CCGG	2 cut(s)	853, 2630
HphI	GGTGA	8 cut(s)	188, 443, 1028, 1480, 1944, 2045, 2127, 2747
Hpy166II	GTNNAC	8 cut(s)	294, 370, 413, 454, 794, 1095, 1545, 2548
Hpy8I	GTNNAC	8 cut(s)	294, 370, 413, 454, 794, 1095, 1545, 2548
Hpy99I	CGWCG	1 cut(s)	798
HpyCH4III	ACNGT	2 cut(s)	762, 1860
HpyCH4IV	ACGT	5 cut(s)	796, 1229, 2090, 2416, 2954
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 218, 2912, 2921, 2930
HpySE526I	ACGT	5 cut(s)	796, 1229, 2090, 2416, 2954
Hsp92I	GRCGYC	1 cut(s)	2313
HspAI	GCGC	3 cut(s)	113, 1173, 2158
Kpn2I	TCCGGA	2 cut(s)	852, 2629
KpnI	GGTACC	1 cut(s)	1563
KspAI	GTTAAC	2 cut(s)	294, 370
LmnI	GCTCC	8 cut(s)	17, 217, 260, 513, 2197, 2306, 2424, 2678
Lsp1109I	GCAGC	8 cut(s)	102, 250, 1303, 1359, 2504, 2507, 2630, 2741
LweI	GCATC	6 cut(s)	614, 1246, 1888, 1958, 2635, 2645
MaeII	ACGT	5 cut(s)	796, 1229, 2090, 2416, 2954
MaeIII	GTNAC	9 cut(s)	471, 673, 740, 1230, 1303, 1723, 1793, 2086, 2842
MbiI	CCGCTC	1 cut(s)	181
MfeI	CAATTG	2 cut(s)	310, 626
MflI	RGATCY	3 cut(s)	800, 1146, 2714
MhlI	GDGCHC	6 cut(s)	510, 637, 1882, 2245, 2836, 2935
MlyI	GAGTC	5 cut(s)	872, 1790, 2111, 2610, 2948
MmeI	TCCRAC	1 cut(s)	37
Mph1103I	ATGCAT	1 cut(s)	2628
MroI	TCCGGA	2 cut(s)	852, 2629
MroXI	GAANNNNTTC	1 cut(s)	2820
MseI	TTAA	7 cut(s)	293, 369, 818, 1596, 1640, 1965, 2117
MslI	CAYNNNNRTG	4 cut(s)	351, 2419, 2591, 3024
MspA1I	CMGCKG	2 cut(s)	221, 2048
MspCI	CTTAAG	1 cut(s)	1964
MspI	CCGG	2 cut(s)	853, 2630
MspR9I	CCNGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
MunI	CAATTG	2 cut(s)	310, 626
Mva1269I	GAATGC	3 cut(s)	266, 1175, 1375
MvaI	CCWGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	5 cut(s)	92, 218, 2912, 2921, 2930
NdeI	CATATG	3 cut(s)	958, 1813, 2704
NheI	GCTAGC	1 cut(s)	1439
NmuCI	GTSAC	2 cut(s)	1793, 2086
NsbI	TGCGCA	1 cut(s)	1174
NsiI	ATGCAT	1 cut(s)	2628
NspI	RCATGY	2 cut(s)	350, 851
PaeR7I	CTCGAG	1 cut(s)	2928
PciI	ACATGT	2 cut(s)	346, 847
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PctI	GAATGC	3 cut(s)	266, 1175, 1375
PdmI	GAANNNNTTC	1 cut(s)	2820
PflFI	GACNNNGTC	2 cut(s)	53, 101
PflMI	CCANNNNNTGG	1 cut(s)	2390
PfoI	TCCNGGA	1 cut(s)	2302
PkrI	GCNGC	8 cut(s)	117, 265, 1293, 1374, 2494, 2497, 2620, 2731
PleI	GAGTC	5 cut(s)	872, 1790, 2110, 2609, 2947
PmaCI	CACGTG	1 cut(s)	2091
PmlI	CACGTG	1 cut(s)	2091
PpsI	GAGTC	5 cut(s)	872, 1790, 2110, 2609, 2947
Ppu21I	YACGTR	1 cut(s)	2091
PpuMI	RGGWCCY	2 cut(s)	753, 2297
PscI	ACATGT	2 cut(s)	346, 847
PsiI	TTATAA	1 cut(s)	2219
Psp5II	RGGWCCY	2 cut(s)	753, 2297
Psp6I	CCWGG	7 cut(s)	910, 1995, 2302, 2315, 2389, 2574, 2675
PspCI	CACGTG	1 cut(s)	2091
PspGI	CCWGG	7 cut(s)	910, 1995, 2302, 2315, 2389, 2574, 2675
PspOMI	GGGCCC	2 cut(s)	2241, 2832
PspPPI	RGGWCCY	2 cut(s)	753, 2297
PstNI	CAGNNNCTG	3 cut(s)	911, 1240, 1748
PsuI	RGATCY	3 cut(s)	800, 1146, 2714
PsyI	GACNNNGTC	2 cut(s)	53, 101
PvuII	CAGCTG	2 cut(s)	221, 2048
RsaI	GTAC	5 cut(s)	480, 1272, 1428, 1561, 2001
RsaNI	GTAC	5 cut(s)	479, 1271, 1427, 1560, 2000
RseI	CAYNNNNRTG	4 cut(s)	351, 2419, 2591, 3024
SalI	GTCGAC	2 cut(s)	792, 2546
SaqAI	TTAA	7 cut(s)	293, 369, 818, 1596, 1640, 1965, 2117
SatI	GCNGC	8 cut(s)	116, 264, 1292, 1373, 2493, 2496, 2619, 2730
SchI	GAGTC	5 cut(s)	872, 1790, 2111, 2610, 2948
ScrFI	CCNGG	7 cut(s)	912, 1997, 2304, 2317, 2391, 2576, 2677
SduI	GDGCHC	6 cut(s)	510, 637, 1882, 2245, 2836, 2935
SfaNI	GCATC	6 cut(s)	614, 1246, 1888, 1958, 2635, 2645
SfcI	CTRYAG	4 cut(s)	413, 804, 1399, 2025
Sfr274I	CTCGAG	1 cut(s)	2928
SinI	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2466
SlaI	CTCGAG	1 cut(s)	2928
SmiMI	CAYNNNNRTG	4 cut(s)	351, 2419, 2591, 3024
SmlI	CTYRAG	4 cut(s)	1573, 1789, 1964, 2928
SmoI	CTYRAG	4 cut(s)	1573, 1789, 1964, 2928
SsiI	CCGC	3 cut(s)	111, 181, 1213
StyD4I	CCNGG	7 cut(s)	910, 1995, 2302, 2315, 2389, 2574, 2675
StyI	CCWWGG	5 cut(s)	833, 1387, 1464, 1563, 2997
TaaI	ACNGT	2 cut(s)	762, 1860
TaiI	ACGT	5 cut(s)	799, 1232, 2093, 2419, 2957
TaqI	TCGA	9 cut(s)	147, 256, 793, 1141, 1287, 2252, 2547, 2876, 2929
TaqII	GACCGA	1 cut(s)	2198
TatI	WGTACW	2 cut(s)	478, 1270
Tru1I	TTAA	7 cut(s)	293, 369, 818, 1596, 1640, 1965, 2117
Tru9I	TTAA	7 cut(s)	293, 369, 818, 1596, 1640, 1965, 2117
TscAI	CASTG	5 cut(s)	388, 1629, 1660, 1734, 2490
TseFI	GTSAC	2 cut(s)	1793, 2086
TseI	GCWGC	8 cut(s)	115, 263, 1291, 1372, 2492, 2495, 2618, 2729
Tsp45I	GTSAC	2 cut(s)	1793, 2086
TspGWI	ACGGA	6 cut(s)	355, 387, 1150, 1444, 2823, 2973
TspRI	CASTG	5 cut(s)	388, 1629, 1660, 1734, 2490
Tth111I	GACNNNGTC	2 cut(s)	53, 101
Van91I	CCANNNNNTGG	1 cut(s)	2390
Vha464I	CTTAAG	1 cut(s)	1964
VpaK11BI	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2466
XagI	CCTNNNNNAGG	2 cut(s)	1554, 2000
XapI	RAATTY	5 cut(s)	524, 1532, 1850, 2338, 2799
XbaI	TCTAGA	2 cut(s)	584, 2659
XceI	RCATGY	2 cut(s)	350, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1652
XhoI	CTCGAG	1 cut(s)	2928
XmiI	GTMKAC	4 cut(s)	412, 793, 1544, 2547
XmnI	GAANNNNTTC	1 cut(s)	2820
Zsp2I	ATGCAT	1 cut(s)	2628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.