Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000701.1

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Forward (+)

87716 .. 90021

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000701.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgggtttgcgtatttttgctctgctagggttttgcctagttgtaaaattgatcgagtatggatttggggctgccgagctcttgggtcgccttgtccggcatcgcctctgcttggcgtcactggttggcttctgccttctcttttgtttttgtcgaacgttctatccgagtcctgttaccacgctctgtggtgatgggggttcagcacaggttcagctcgtaggtgatggtggcagtctatctttcattgggggcacagttggtgatggcggcgctgcgggtgtggggggtttggctaccggcaacgctatggatttgggcttgccggatcggaatgccggcagtgctggaggtctgattgagaggattgcatgcctcgggagttgcaaggctgagctaggatttctaactttgggccggggatttcttctgcaagctcttaggcccaggcttcgggctttgttgatgatgaaggctagtttgggtcttaggcttatctctaagcctcgggttgctttagggtggcctgcatggcttgatattgacgtggccctcgtagagagcaacgaagctatggagaatggctccaaaagacaaagcgaaggagaaatcggagttcttgacaaggtcggagaagtgatctccaaattaaacaagtccaagcacgcagaccaagccatttgcgtgcttcactccatcgcttttcttctcttccctctcgatccttctctcttcttaggtgctatcggcaagcggtgcagggagaaggttcttagtgttgaagctccttcagctgatgagaggagagaagcgagttgtggaaggctttttaacgaggagctgcattcagatcatttgcttgggttttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

290

Amino Acids

30.71

Weight (kDa)

7.97

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	270, 278, 754
AclI	AACGTT	1 cut(s)	158
AclWI	GGATC	2 cut(s)	336, 716
AcuI	CTGAAG	1 cut(s)	774
AcyI	GRCGYC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	112, 453
AgsI	TTSAA	1 cut(s)	782
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	446
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AloI	GAACNNNNNNTCC	2 cut(s)	148, 180
AluBI	AGCT	8 cut(s)	79, 217, 397, 437, 572, 785, 794, 841
AluI	AGCT	8 cut(s)	79, 217, 397, 437, 572, 785, 794, 841
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	336, 716
Ama87I	CYCGRG	2 cut(s)	377, 507
AoxI	GGCC	4 cut(s)	415, 443, 524, 549
ApeKI	GCWGC	3 cut(s)	71, 275, 841
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	3 cut(s)	415, 444, 550
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	3 cut(s)	203, 236, 275
AvaI	CYCGRG	2 cut(s)	377, 507
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	58, 262, 828
BccI	CCATC	4 cut(s)	188, 221, 260, 704
BciT130I	CCWGG	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	4 cut(s)	26, 38, 398, 477
BfoI	RGCGCY	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	532
BisI	GCNGC	4 cut(s)	72, 271, 276, 842
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	4 cut(s)	73, 272, 277, 843
Bme1390I	CCNGG	2 cut(s)	419, 448
BmeT110I	CYCGRG	2 cut(s)	377, 507
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	3 cut(s)	415, 444, 550
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	419, 448
BmsI	GCATC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpmI	CTGGAG	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	376, 418, 446, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 453
Bse118I	RCCGGY	2 cut(s)	299, 338
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	4 cut(s)	376, 418, 446, 506
BseLI	CCNNNNNNNGG	2 cut(s)	112, 453
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	817, 851
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	58, 262, 828
BsgI	GTGCAG	1 cut(s)	778
BshFI	GGCC	4 cut(s)	417, 445, 526, 551
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	2 cut(s)	377, 507
BsiSI	CCGG	5 cut(s)	97, 300, 326, 339, 418
BslI	CCNNNNNNNGG	2 cut(s)	112, 453
BsmI	GAATGC	2 cut(s)	340, 844
BsnI	GGCC	4 cut(s)	417, 445, 526, 551
BsoBI	CYCGRG	2 cut(s)	377, 507
Bsp1286I	GDGCHC	2 cut(s)	81, 257
Bsp143I	GATC	5 cut(s)	51, 328, 639, 721, 850
Bsp1720I	GCTNAGC	1 cut(s)	393
BspACI	CCGC	3 cut(s)	270, 278, 754
BspANI	GGCC	4 cut(s)	417, 445, 526, 551
BspCNI	CTCAG	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	2 cut(s)	336, 716
BsrFI	RCCGGY	2 cut(s)	299, 338
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	2 cut(s)	299, 338
BssECI	CCNNGG	4 cut(s)	376, 418, 446, 506
BssMI	GATC	5 cut(s)	51, 328, 639, 721, 850
BssNI	GRCGYC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	2 cut(s)	716, 737
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	756
BstC8I	GCNNGC	8 cut(s)	323, 340, 373, 435, 528, 666, 686, 752
BstDEI	CTNAG	6 cut(s)	393, 440, 488, 501, 736, 773
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	5 cut(s)	54, 331, 642, 724, 853
BstMBI	GATC	5 cut(s)	51, 328, 639, 721, 850
BstMWI	GCNNNNNNNGC	5 cut(s)	344, 532, 674, 756, 791
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	375
BstSCI	CCNGG	2 cut(s)	417, 446
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	58, 262, 828
BsuRI	GGCC	4 cut(s)	417, 445, 526, 551
BtgZI	GCGATG	2 cut(s)	86, 682
BtrI	CACGTC	1 cut(s)	547
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	2 cut(s)	119, 349
Cac8I	GCNNGC	8 cut(s)	323, 340, 373, 435, 528, 666, 686, 752
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	2 cut(s)	299, 338
Cfr13I	GGNCC	3 cut(s)	415, 444, 550
CseI	GACGC	1 cut(s)	105
CviAII	CATG	2 cut(s)	372, 531
DdeI	CTNAG	6 cut(s)	393, 440, 488, 501, 736, 773
DpnI	GATC	5 cut(s)	53, 330, 641, 723, 852
DpnII	GATC	5 cut(s)	51, 328, 639, 721, 850
Eam1104I	CTCTTC	2 cut(s)	716, 737
EarI	CTCTTC	2 cut(s)	716, 737
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	774
Eco88I	CYCGRG	2 cut(s)	377, 507
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	2 cut(s)	375, 534
FaiI	YATR	5 cut(s)	60, 311, 373, 532, 575
FatI	CATG	2 cut(s)	371, 530
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	4 cut(s)	72, 271, 276, 842
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	4 cut(s)	72, 271, 276, 842
FspBI	CTAG	4 cut(s)	26, 38, 398, 477
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	4 cut(s)	72, 271, 276, 842
GsuI	CTGGAG	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	4 cut(s)	417, 445, 526, 551
HapII	CCGG	5 cut(s)	97, 300, 326, 339, 418
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	375, 534
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	5 cut(s)	97, 300, 326, 339, 418
HphI	GGTGA	3 cut(s)	203, 236, 275
Hpy188I	TCNGA	6 cut(s)	168, 333, 357, 614, 632, 850
Hpy188III	TCNNGA	3 cut(s)	379, 620, 719
HpyAV	CCTTC	7 cut(s)	146, 466, 596, 735, 760, 798, 816
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	158, 546
HpyCH4V	TGCA	6 cut(s)	371, 387, 433, 530, 759, 844
HpyF10VI	GCNNNNNNNGC	5 cut(s)	344, 532, 674, 756, 791
HpyF3I	CTNAG	6 cut(s)	393, 440, 488, 501, 736, 773
HpySE526I	ACGT	2 cut(s)	158, 546
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	375, 534
HspAI	GCGC	1 cut(s)	273
KroI	GCCGGC	1 cut(s)	338
KroNI	GCCGGC	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	51, 328, 639, 721, 850
LmnI	GCTCC	3 cut(s)	590, 790, 838
Lsp1109I	GCAGC	3 cut(s)	58, 262, 828
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	4 cut(s)	26, 38, 398, 477
MaeII	ACGT	2 cut(s)	158, 546
MaeIII	GTNAC	2 cut(s)	117, 175
MalI	GATC	5 cut(s)	53, 330, 641, 723, 852
MboI	GATC	5 cut(s)	51, 328, 639, 721, 850
MboII	GAAGA	4 cut(s)	419, 698, 703, 724
MhlI	GDGCHC	2 cut(s)	81, 257
MluCI	AATT	2 cut(s)	47, 647
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	9 cut(s)	116, 344, 357, 386, 516, 563, 726, 795, 829
MroNI	GCCGGC	1 cut(s)	338
MseI	TTAA	2 cut(s)	650, 831
MslI	CAYNNNNRTG	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	794
MspI	CCGG	5 cut(s)	97, 300, 326, 339, 418
MspR9I	CCNGG	2 cut(s)	419, 448
Mva1269I	GAATGC	2 cut(s)	340, 844
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	5 cut(s)	344, 532, 674, 756, 791
NaeI	GCCGGC	1 cut(s)	340
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	5 cut(s)	51, 328, 639, 721, 850
NgoMIV	GCCGGC	1 cut(s)	338
NlaIII	CATG	2 cut(s)	375, 534
NlaIV	GGNNCC	1 cut(s)	586
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	164, 552
PctI	GAATGC	2 cut(s)	340, 844
PdiI	GCCGGC	1 cut(s)	340
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	73, 272, 277, 843
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	3 cut(s)	415, 444, 550
PsyI	GACNNNGTC	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	794
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	650, 831
SatI	GCNGC	4 cut(s)	72, 271, 276, 842
Sau3AI	GATC	5 cut(s)	51, 328, 639, 721, 850
Sau96I	GGNCC	3 cut(s)	415, 444, 550
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	419, 448
SduI	GDGCHC	2 cut(s)	81, 257
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	683
SphI	GCATGC	1 cut(s)	375
Sse9I	AATT	2 cut(s)	47, 647
SsiI	CCGC	3 cut(s)	270, 278, 754
SspMI	CTAG	4 cut(s)	26, 38, 398, 477
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	417, 446
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	161, 549
TaqI	TCGA	3 cut(s)	54, 154, 720
TasI	AATT	2 cut(s)	47, 647
TauI	GCSGC	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	650, 831
Tru9I	TTAA	2 cut(s)	650, 831
TscAI	CASTG	2 cut(s)	126, 349
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	3 cut(s)	71, 275, 841
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	235, 485
TspRI	CASTG	2 cut(s)	126, 349
Tth111I	GACNNNGTC	1 cut(s)	626
XceI	RCATGY	1 cut(s)	375
XspI	CTAG	4 cut(s)	26, 38, 398, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.