Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8075350.1

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Forward (+)

51 .. 580

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8075350.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggagaacggctccaaaagacgaagcgaagtagaaatcaaagttcttgacaaggtcggagaagtgatctccgaattacacaaggccaagcacgcagaccaagtcatttccgcgctgcactccctcgctattcttctcttccctctcgattcttctctcttctcaggtgctattggtgagcggtgcagagagcaggttcttagtgttgaagctccttcagctgatgagagaagcgagttgtggaagactttttatcgaggagctgcattcagaacatttgctcgggttttgttaactggtacttctcttgcctctaattttcgtattttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

110

Amino Acids

12.25

Weight (kDa)

7.94

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 181
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	3 cut(s)	212, 221, 263
AluI	AGCT	3 cut(s)	212, 221, 263
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	115, 263
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	102, 250
BceAI	ACGGC	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	2 cut(s)	116, 264
BlsI	GCNGC	2 cut(s)	117, 265
BmeT110I	CYCGRG	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	251
BplI	GAGNNNNNCTC	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	102, 250
BsgI	GTGCAG	2 cut(s)	101, 205
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	266
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	111, 181
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	176
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	143, 164
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	163, 200
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 218
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	102, 250
BstV2I	GAAGAC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	86
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	300
CviJI	RGCY	5 cut(s)	12, 86, 212, 221, 263
CviKI_1	RGCY	5 cut(s)	12, 86, 212, 221, 263
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	163, 200
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	143, 164
EarI	CTCTTC	2 cut(s)	143, 164
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	116, 264
Fsp4HI	GCNGC	2 cut(s)	116, 264
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	116, 264
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	149
HpaI	GTTAAC	1 cut(s)	294
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	3 cut(s)	59, 73, 272
Hpy188III	TCNNGA	2 cut(s)	47, 146
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	118, 186, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 218
HpyF3I	CTNAG	2 cut(s)	163, 200
HspAI	GCGC	1 cut(s)	113
KspAI	GTTAAC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	3 cut(s)	17, 217, 260
LpnPI	CCDG	3 cut(s)	150, 179, 282
Lsp1109I	GCAGC	2 cut(s)	102, 250
MalI	GATC	1 cut(s)	68
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	1 cut(s)	66
MboII	GAAGA	5 cut(s)	125, 130, 144, 151, 256
MluCI	AATT	2 cut(s)	74, 316
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	134, 153, 251, 322
MseI	TTAA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	266
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	92, 218
NdeII	GATC	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	13
PctI	GAATGC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	2 cut(s)	53, 101
PkrI	GCNGC	2 cut(s)	117, 265
PspN4I	GGNNCC	1 cut(s)	13
PsyI	GACNNNGTC	2 cut(s)	53, 101
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	116, 264
Sau3AI	GATC	1 cut(s)	66
SetI	ASST	6 cut(s)	57, 169, 198, 214, 223, 265
Sse9I	AATT	2 cut(s)	74, 316
SsiI	CCGC	2 cut(s)	111, 181
TaqI	TCGA	2 cut(s)	147, 256
TasI	AATT	2 cut(s)	74, 316
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseI	GCWGC	2 cut(s)	115, 263
Tth111I	GACNNNGTC	2 cut(s)	53, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.