Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001585.1

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Reverse (-)

6613 .. 7444

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001585.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggagaatggctccaaaagacgaagcgaaggagaaatcggagttcttgacaaggtcggagaagtgatctctgaattaaacaagtccaagcacgcagaccaagccatttgcgtgcttcactccatcgcttttcttctcttccttctcgatccttctctcttctcaggtgctatcggcgagcggtgcagggagaaggttcttagtgttgaagctccttcagttgatgagaggagagaagtgagttgtggaaggctttttaccgaggagctgcattcagatcatttgttcgggttttgttgcctgatgtcgcttccaattggcttgcttgtttcccgttttcagcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

115

Amino Acids

12.79

Weight (kDa)

5.7

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	201
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	2 cut(s)	212, 268
AluI	AGCT	2 cut(s)	212, 268
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	13
BplI	GAGNNNNNCTC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	244, 278
BseXI	GCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	66, 148, 277
BspACI	CCGC	1 cut(s)	181
BspCNI	CTCAG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	66, 148, 277
Bst6I	CTCTTC	2 cut(s)	143, 164
BstC8I	GCNNGC	4 cut(s)	93, 113, 179, 323
BstDEI	CTNAG	2 cut(s)	163, 200
BstKTI	GATC	3 cut(s)	69, 151, 280
BstMBI	GATC	3 cut(s)	66, 148, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 183
BstV1I	GCAGC	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	109
Cac8I	GCNNGC	4 cut(s)	93, 113, 179, 323
CviJI	RGCY	6 cut(s)	12, 104, 212, 253, 268, 321
CviKI_1	RGCY	6 cut(s)	12, 104, 212, 253, 268, 321
DdeI	CTNAG	2 cut(s)	163, 200
DpnI	GATC	3 cut(s)	68, 150, 279
DpnII	GATC	3 cut(s)	66, 148, 277
Eam1104I	CTCTTC	2 cut(s)	143, 164
EarI	CTCTTC	2 cut(s)	143, 164
Eco57I	CTGAAG	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	269
GluI	GCNGC	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	41, 59, 73, 277
Hpy188III	TCNNGA	2 cut(s)	47, 146
HpyAV	CCTTC	6 cut(s)	23, 152, 162, 187, 225, 243
HpyCH4V	TGCA	2 cut(s)	186, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 183
HpyF3I	CTNAG	2 cut(s)	163, 200
Kzo9I	GATC	3 cut(s)	66, 148, 277
LmnI	GCTCC	3 cut(s)	17, 217, 265
LpnPI	CCDG	3 cut(s)	150, 172, 314
Lsp1109I	GCAGC	1 cut(s)	255
MalI	GATC	3 cut(s)	68, 150, 279
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	3 cut(s)	66, 148, 277
MboII	GAAGA	3 cut(s)	125, 130, 151
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	2 cut(s)	74, 315
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	2 cut(s)	222, 256
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	101, 183
NdeII	GATC	3 cut(s)	66, 148, 277
NlaIV	GGNNCC	1 cut(s)	13
PctI	GAATGC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	53
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	66, 148, 277
SetI	ASST	5 cut(s)	57, 169, 198, 214, 270
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	74, 315
SsiI	CCGC	1 cut(s)	181
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	74, 315
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.