Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Forward (+)

57778418 .. 57784000

Gene Structure 5583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2811 bp

ATGGAGAACGGCTCCAAAAGAAGAAGCGAAGTAGAAAACAAAGTTCTTGACAAGGTCGGAGAAGTGATCTCCCAATTACACAAGGCCAAGCACGCAGACCAAGCCATTTGCGCGCTTCACTCCCTCGCTATTCTTCTCTTCCCTCTCGATTCTTCTCTCTTCTCAGGTGCTATTGGTGAGCGGTGCAGAGAGCAGGTTCTTAGTGTTGAAGCTCCTTCAGCTGATGAGAGAAGCGAGTTGTGGAAGACTTTTTATCGAGGAGCTGCATTCAGAACATTTGCTCGGGTTTTGTTAACTGATATCGCTTCCAATTGGCTTGCTTGTTTCCCGTTTTCAGCACGGAAACATGTGTATGATGTCTTCTTTGTTAACGGACTTGCCACCGGGGTTGTTCAGATTTTGGTCCCTTGTCTACAGCAAAGTGGAAGTGGTGATGTTGATGTCAATGCTGTTCACTCCAATACTGAAAGGTTACTTGTACTTTGCTTGCTTGAAAATAATGGTGTGCTCCAGATGGCTAGAGAATTTGGTGGCTCTTTCCAGTCTGAAGATTATACAAATGAAAATCTCAAGTCAACTGTATCTAGAGTGGCACAGATTGTTGCATCTATACCTGACAAAGCACAATTGAGAGCCCCGACTTCACTTTCATCACATTTGTTCTTCAAGCAAGTTACCATTCAGCTTCTTTCTCTAGCAGAAGAAGGGAATATGGAGATATTAGATGGCTTCCGTGAAAGTGACATGAATGGGACCTTACTGTTTGTTGGGGAAACATTTTCTCGTATATGTCGACGTGGATCTGTAGATGTGCTTTTAAGTGAAATAATCTCAAGGATTCTTAGACATGTCCGGAGTTTGTCATCATCAACTATGGACTCACTAGGTTCAGATGTTCTGGAATCAGACCCTGGTTCCCAATTTTGGTTGAATCTTATTCAAGCAATCAAAGATTTATATGCTGTGGAAAGAATGACTGAGCAACTTTTACATCAGCTTGCAACTGAACAAGTGGGTGATATTGAAGCTTACTGGATTCTTTGGCTATTATTTCATCGGGTTTTCAAGAGCCAAATATCAGCGAGGTCCATGTTTACTGACAAGTTTTTAATCTGGAAAGTATTTCCTATTTGTTGCCTTCGATGGATCCTTCAATTTTCCGTCCTTGAATGCGCACCAGATTCTAATTCACTTGCTAAAGGTCATAATACCCGCAATTTCTTAGACACGTTACAGCATCTGGTAGCAGTATGGTCTAAAAGGGAGTTTGTACAATCAGCCCCAGTTGAGCAGCAAATATATGTAACTGCTGGTGTAGGCCTTTCCCTAGAGCAGATGTCTAAGGAGGAACTAGATGAGACAAAGGATGTGTTGCATTCAATTCTCCAAGGAGTGAGCTGTAGGCTTGAAAGCCCTAATCATTTAGTACGGAAGATGGCTAGCTCTGTTGCTTTAGTTTTCTCCAAGGTGATTGATCCAAAAAATCCTCTATACCTTGATGACAGCCTAACTGGGGAGACTATTGACTGGGAATTTGGGTTGTCTACTCCTAAGAAAGGTACCCTGGGAACCTCAAGTTGCTTAGAAGAAGGTATTAACAAATCCAAAATATCTAAAACCTCAGTGCTGGAAGATGGCTTAAACCACAAAGCCAGTGGGAAGAGTAAAAGTAGGAAATTATCTGAAACAAAGTTGGTTGATCCGGACGAGATCATTGATCCTGTTACACTGAATTATGATTCAGTCTCTGATGAAGATGACAACAATGATAGTGAGGATTCTGATGTCTCAAGTGACTCATCTTTACAGCCATATGATTTATCAGATGATGACACAGATTTGAAAAGGAAATTTTCACAGTTGGTTGATGTAGTTGGGGCACTTCGGAAATCTGATGATGCTGATGGGGTGGAGAAGGCTCTTGAAGTTTCTGAAAAACTTGTGCGAGCATCACCTGATGAGCTTAAGTTTGTAGCAAGTGATCTCGTGAGAACCCTGGTACAGGTTCGTTGCTCTGACTTGGCTATAGAAGGTGAGGAAGATTCAGCTGAAGACAAGAGACAAAGAACATTGGTCGCTTTGCTTGTCACGTGTCCATTGGAGTCTCTTGAAACTTTAAACAAACTACTATATTCACCTAATGTGGATGTCAGTCAGCGCTTACTGATTCTTGATGTATTGACCGAGGGGGCTGAGGAGCTTGCTGATACTAAAATTATAAAGGCTAAACATCCGACTAGGGCCCTCATATCAACCACATCAGAGACACAAGCTTGGTTCCTACCTAGTGACATAGGTCCTCCTGGAGCTGGTGCCTGGAAAGAGATTTCAGAAACAAATTCTTTACTGAACTGGATTTCAGAAACATTCTTTATCGTTATGACAAAGAGGGAACTTCCCTCAAAACCTGGTCAGATTAGGAGAGGAAAGACACGTCAATGGAGCCTTAGATCAGCCAATGCACCAAAAAGCCAAATAGAATGGTCCCATAATAAGTTTCCAGTGTATGCAGCAGCATTTATGCTTCCTGCCATGCAGGGGTTTGATAAAAGAAGGCAAGGTGTCGACCTTCTTGATATAGAGATTTTATTGTCCCTGGGAAAAACTCATCTATATGCTTGGAGTCTGTATGAAATGTGCAGCCATGCATCCGGAAGCATCATCTGCTCTGGCTGGCCCTCTTCTAGATATGCTAAGCTCCAGGGAGATATGTTTTCACAAGGAAGCATATGTCAGAAGATCTACCCTTTTTGCAGCTTCATGCGTATTGCTATCACTTCACCCCTCTTATGTAGCAACCTCCTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

936

Amino Acids

104.24

Weight (kDa)

5.33

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TELO2_ARM	PF25320	270 - 510	3.2e-124	TELO2 ARM repeat domain
Telomere_reg-2	PF10193	620 - 731	5.1e-22	Telomere length regulation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2219
Acc16I	TGCGCA	1 cut(s)	1174
Acc36I	ACCTGC	1 cut(s)	184
Acc65I	GGTACC	1 cut(s)	1559
AccB1I	GGYRCC	2 cut(s)	1559, 2312
AccBSI	CCGCTC	1 cut(s)	181
AccI	GTMKAC	4 cut(s)	412, 793, 1544, 2565
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	3 cut(s)	852, 1702, 2651
AciI	CCGC	2 cut(s)	181, 1213
AclWI	GGATC	6 cut(s)	808, 1141, 1154, 1469, 1694, 1712
AcsI	RAATTY	4 cut(s)	524, 1532, 1850, 2338
AcuI	CTGAAG	3 cut(s)	201, 567, 2070
AcvI	CACGTG	1 cut(s)	2091
AfaI	GTAC	5 cut(s)	480, 1272, 1428, 1561, 2001
AfeI	AGCGCT	1 cut(s)	2159
AfiI	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2309, 2538
AflII	CTTAAG	1 cut(s)	1964
AflIII	ACRYGT	5 cut(s)	346, 847, 1227, 2090, 2432
AjiI	CACGTC	2 cut(s)	797, 2435
AjnI	CCWGG	8 cut(s)	910, 1563, 1995, 2302, 2315, 2407, 2595, 2700
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
AlwI	GGATC	6 cut(s)	808, 1141, 1154, 1469, 1694, 1712
AlwNI	CAGNNNCTG	3 cut(s)	911, 1240, 1748
Ama87I	CYCGRG	1 cut(s)	282
Aor13HI	TCCGGA	3 cut(s)	852, 1702, 2651
Aor51HI	AGCGCT	1 cut(s)	2159
AoxI	GGCC	4 cut(s)	84, 1318, 2241, 2675
ApaI	GGGCCC	1 cut(s)	2245
ApeKI	GCWGC	6 cut(s)	263, 1291, 2510, 2513, 2640, 2754
ApoI	RAATTY	4 cut(s)	524, 1532, 1850, 2338
ArsI	GACNNNNNNTTYG	2 cut(s)	1517, 1549
Asp718I	GGTACC	1 cut(s)	1559
AspLEI	GCGC	4 cut(s)	113, 115, 1175, 2160
AspS9I	GGNCC	8 cut(s)	403, 753, 1086, 2241, 2242, 2297, 2484, 2676
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	8 cut(s)	188, 443, 1028, 1480, 1944, 2045, 2127, 2772
AsuNHI	GCTAGC	1 cut(s)	1439
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2484
BaeGI	GKGCMC	2 cut(s)	1882, 2245
BamHI	GGATCC	1 cut(s)	1146
BanI	GGYRCC	2 cut(s)	1559, 2312
BanII	GRGCYC	2 cut(s)	637, 2245
BarI	GAAGNNNNNNTAC	2 cut(s)	344, 376
BauI	CACGAG	1 cut(s)	1985
BbrPI	CACGTG	1 cut(s)	2091
BbsI	GAAGAC	3 cut(s)	251, 352, 2058
Bbv12I	GWGCWC	1 cut(s)	510
BbvCI	CCTCAGC	1 cut(s)	2193
BbvI	GCAGC	6 cut(s)	250, 1303, 2522, 2525, 2652, 2766
BccI	CCATC	6 cut(s)	508, 719, 1137, 1429, 1628, 1898
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	8 cut(s)	912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
BfmI	CTRYAG	4 cut(s)	413, 804, 1399, 2025
BfoI	RGCGCY	1 cut(s)	2161
BfrI	CTTAAG	1 cut(s)	1964
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	2739
BisI	GCNGC	6 cut(s)	264, 1292, 2511, 2514, 2641, 2755
BlpI	GCTNAGC	1 cut(s)	2694
BlsI	GCNGC	6 cut(s)	265, 1293, 2512, 2515, 2642, 2756
Bme1390I	CCNGG	9 cut(s)	385, 912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
Bme18I	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2484
BmeT110I	CYCGRG	1 cut(s)	282
BmgBI	CACGTC	2 cut(s)	797, 2435
BmgT120I	GGNCC	8 cut(s)	403, 753, 1086, 2241, 2242, 2297, 2484, 2676
BmrFI	CCNGG	9 cut(s)	385, 912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
BmrI	ACTGGG	3 cut(s)	1277, 1521, 1537
BmsI	GCATC	6 cut(s)	614, 1246, 1888, 1958, 2657, 2667
BmtI	GCTAGC	1 cut(s)	1443
BmuI	ACTGGG	3 cut(s)	1277, 1521, 1537
BoxI	GACNNNNGTC	1 cut(s)	2295
BpiI	GAAGAC	3 cut(s)	251, 352, 2058
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	3 cut(s)	494, 2325, 2684
Bpu10I	CCTNAGC	1 cut(s)	2193
Bpu1102I	GCTNAGC	1 cut(s)	2694
BpuEI	CTTGAG	4 cut(s)	554, 817, 1558, 1774
BpuMI	CCSGG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	2091
BsaWI	WCCGGW	3 cut(s)	852, 1702, 2651
Bsc4I	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2309, 2538
Bse1I	ACTGG	8 cut(s)	541, 1037, 1283, 1516, 1532, 1653, 2357, 2501
BseAI	TCCGGA	3 cut(s)	852, 1702, 2651
BseBI	CCWGG	8 cut(s)	912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
BseGI	GGATG	4 cut(s)	1372, 2152, 2230, 2648
BseLI	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2309, 2538
BseMII	CTCAG	4 cut(s)	177, 969, 1635, 2184
BseNI	ACTGG	8 cut(s)	541, 1037, 1283, 1516, 1532, 1653, 2357, 2501
BsePI	GCGCGC	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	273, 2210
BseSI	GKGCMC	2 cut(s)	1882, 2245
BseXI	GCAGC	6 cut(s)	250, 1303, 2522, 2525, 2652, 2766
BsgI	GTGCAG	2 cut(s)	205, 2659
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	4 cut(s)	86, 1320, 2243, 2677
BshNI	GGYRCC	2 cut(s)	1559, 2312
BsiHKAI	GWGCWC	1 cut(s)	510
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	4 cut(s)	384, 853, 1703, 2652
BslFI	GGGAC	4 cut(s)	389, 766, 2470, 2578
BslI	CCNNNNNNNGG	6 cut(s)	924, 1513, 1556, 2002, 2309, 2538
BsmAI	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
BsmFI	GGGAC	4 cut(s)	389, 766, 2470, 2578
BsmI	GAATGC	3 cut(s)	266, 1175, 1375
BsnI	GGCC	4 cut(s)	86, 1320, 2243, 2677
BsoBI	CYCGRG	1 cut(s)	282
Bsp120I	GGGCCC	1 cut(s)	2241
Bsp1286I	GDGCHC	4 cut(s)	510, 637, 1882, 2245
Bsp13I	TCCGGA	3 cut(s)	852, 1702, 2651
Bsp1407I	TGTACA	1 cut(s)	1270
Bsp1720I	GCTNAGC	1 cut(s)	2694
BspACI	CCGC	2 cut(s)	181, 1213
BspANI	GGCC	4 cut(s)	86, 1320, 2243, 2677
BspCNI	CTCAG	4 cut(s)	176, 970, 1634, 2185
BspEI	TCCGGA	3 cut(s)	852, 1702, 2651
BspFNI	CGCG	1 cut(s)	113
BspMI	ACCTGC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	1443
BspPI	GGATC	6 cut(s)	808, 1141, 1154, 1469, 1694, 1712
BspT107I	GGYRCC	2 cut(s)	1559, 2312
BspTI	CTTAAG	1 cut(s)	1964
BsrBI	CCGCTC	1 cut(s)	181
BsrGI	TGTACA	1 cut(s)	1270
BsrI	ACTGG	8 cut(s)	541, 1037, 1283, 1516, 1532, 1653, 2357, 2501
BssHII	GCGCGC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	1985
BssT1I	CCWWGG	2 cut(s)	1387, 1464
Bst2BI	CACGAG	1 cut(s)	1985
Bst2UI	CCWGG	8 cut(s)	912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
Bst4CI	ACNGT	3 cut(s)	580, 762, 1860
Bst6I	CTCTTC	4 cut(s)	143, 164, 1655, 2686
BstAFI	CTTAAG	1 cut(s)	1964
BstAPI	GCANNNNNTGC	1 cut(s)	2664
BstAUI	TGTACA	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	2091
BstC8I	GCNNGC	9 cut(s)	93, 113, 318, 488, 999, 1441, 1947, 2202, 2675
BstENI	CCTNNNNNAGG	2 cut(s)	1554, 2000
BstF5I	GGATG	4 cut(s)	1372, 2152, 2230, 2648
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	2161
BstHHI	GCGC	4 cut(s)	113, 115, 1175, 2160
BstMAI	GTCTC	7 cut(s)	1352, 1511, 1750, 1792, 2053, 2109, 2258
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 101, 110, 218, 2664
BstNI	CCWGG	8 cut(s)	912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
BstNSI	RCATGY	2 cut(s)	350, 851
BstPAI	GACNNNNGTC	1 cut(s)	2295
BstSCI	CCNGG	9 cut(s)	383, 910, 1563, 1995, 2302, 2315, 2407, 2595, 2700
BstSFI	CTRYAG	4 cut(s)	413, 804, 1399, 2025
BstSLI	GKGCMC	2 cut(s)	1882, 2245
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	6 cut(s)	250, 1303, 2522, 2525, 2652, 2766
BstV2I	GAAGAC	3 cut(s)	251, 352, 2058
BstX2I	RGATCY	3 cut(s)	800, 1146, 2739
BstYI	RGATCY	3 cut(s)	800, 1146, 2739
BsuRI	GGCC	4 cut(s)	86, 1320, 2243, 2677
BtrI	CACGTC	2 cut(s)	797, 2435
BtsCI	GGATG	4 cut(s)	1372, 2152, 2230, 2648
BtsIMutI	CAGTG	4 cut(s)	1629, 1660, 1727, 2508
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	9 cut(s)	93, 113, 318, 488, 999, 1441, 1947, 2202, 2675
CaiI	CAGNNNCTG	3 cut(s)	911, 1240, 1748
CfoI	GCGC	4 cut(s)	113, 115, 1175, 2160
Cfr13I	GGNCC	8 cut(s)	403, 753, 1086, 2241, 2242, 2297, 2484, 2676
CsiI	ACCWGGT	1 cut(s)	2407
Csp6I	GTAC	5 cut(s)	479, 1271, 1427, 1560, 2000
CspCI	CAANNNNNGTGG	4 cut(s)	370, 405, 1636, 1671
CviAII	CATG	7 cut(s)	347, 745, 848, 1090, 2533, 2645, 2761
CviQI	GTAC	5 cut(s)	479, 1271, 1427, 1560, 2000
DraI	TTTAAA	1 cut(s)	2118
Eam1104I	CTCTTC	4 cut(s)	143, 164, 1655, 2686
EarI	CTCTTC	4 cut(s)	143, 164, 1655, 2686
Eco130I	CCWWGG	2 cut(s)	1387, 1464
Eco147I	AGGCCT	1 cut(s)	1320
Eco24I	GRGCYC	2 cut(s)	637, 2245
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2484
Eco47III	AGCGCT	1 cut(s)	2159
Eco57I	CTGAAG	3 cut(s)	201, 567, 2070
Eco72I	CACGTG	1 cut(s)	2091
Eco88I	CYCGRG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	2 cut(s)	1554, 2000
EcoO109I	RGGNCCY	4 cut(s)	753, 2241, 2242, 2297
EcoRII	CCWGG	8 cut(s)	910, 1563, 1995, 2302, 2315, 2407, 2595, 2700
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	1387, 1464
EcoT22I	ATGCAT	1 cut(s)	2650
EcoT38I	GRGCYC	2 cut(s)	637, 2245
ErhI	CCWWGG	2 cut(s)	1387, 1464
FaeI	CATG	7 cut(s)	350, 748, 851, 1093, 2536, 2648, 2764
FaqI	GGGAC	4 cut(s)	389, 766, 2470, 2578
FatI	CATG	7 cut(s)	346, 744, 847, 1089, 2532, 2644, 2760
FauI	CCCGC	1 cut(s)	1220
FauNDI	CATATG	2 cut(s)	1813, 2729
FblI	GTMKAC	4 cut(s)	412, 793, 1544, 2565
Fnu4HI	GCNGC	6 cut(s)	264, 1292, 2511, 2514, 2641, 2755
FokI	GGATG	4 cut(s)	1379, 2159, 2217, 2635
FriOI	GRGCYC	2 cut(s)	637, 2245
Fsp4HI	GCNGC	6 cut(s)	264, 1292, 2511, 2514, 2641, 2755
FspAI	RTGCGCAY	1 cut(s)	1174
FspI	TGCGCA	1 cut(s)	1174
GlaI	GCGC	4 cut(s)	112, 114, 1174, 2159
GluI	GCNGC	6 cut(s)	264, 1292, 2511, 2514, 2641, 2755
GsuI	CTGGAG	3 cut(s)	494, 2325, 2684
HaeII	RGCGCY	1 cut(s)	2161
HaeIII	GGCC	4 cut(s)	86, 1320, 2243, 2677
HapII	CCGG	4 cut(s)	384, 853, 1703, 2652
HhaI	GCGC	4 cut(s)	113, 115, 1175, 2160
Hin1II	CATG	7 cut(s)	350, 748, 851, 1093, 2536, 2648, 2764
Hin6I	GCGC	4 cut(s)	111, 113, 1173, 2158
HinP1I	GCGC	4 cut(s)	111, 113, 1173, 2158
HincII	GTYRAC	5 cut(s)	294, 370, 576, 794, 2566
HindII	GTYRAC	5 cut(s)	294, 370, 576, 794, 2566
HindIII	AAGCTT	2 cut(s)	1026, 2271
HpaI	GTTAAC	2 cut(s)	294, 370
HpaII	CCGG	4 cut(s)	384, 853, 1703, 2652
HphI	GGTGA	8 cut(s)	188, 443, 1028, 1480, 1944, 2045, 2127, 2772
Hpy166II	GTNNAC	9 cut(s)	294, 370, 413, 454, 576, 794, 1095, 1545, 2566
Hpy8I	GTNNAC	9 cut(s)	294, 370, 413, 454, 576, 794, 1095, 1545, 2566
Hpy99I	CGWCG	1 cut(s)	798
HpyAV	CCTTC	9 cut(s)	225, 698, 1148, 1160, 1583, 1909, 2024, 2547, 2579
HpyCH4III	ACNGT	3 cut(s)	580, 762, 1860
HpyCH4IV	ACGT	4 cut(s)	796, 1229, 2090, 2434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 101, 110, 218, 2664
HpySE526I	ACGT	4 cut(s)	796, 1229, 2090, 2434
Hsp92II	CATG	7 cut(s)	350, 748, 851, 1093, 2536, 2648, 2764
HspAI	GCGC	4 cut(s)	111, 113, 1173, 2158
Kpn2I	TCCGGA	3 cut(s)	852, 1702, 2651
KpnI	GGTACC	1 cut(s)	1563
KspAI	GTTAAC	2 cut(s)	294, 370
LmnI	GCTCC	8 cut(s)	17, 217, 260, 513, 2197, 2306, 2442, 2703
Lsp1109I	GCAGC	6 cut(s)	250, 1303, 2522, 2525, 2652, 2766
LweI	GCATC	6 cut(s)	614, 1246, 1888, 1958, 2657, 2667
MabI	ACCWGGT	1 cut(s)	2407
MaeII	ACGT	4 cut(s)	796, 1229, 2090, 2434
MaeIII	GTNAC	9 cut(s)	471, 673, 740, 1230, 1303, 1723, 1793, 2086, 2288
MbiI	CCGCTC	1 cut(s)	181
MfeI	CAATTG	2 cut(s)	310, 626
MflI	RGATCY	3 cut(s)	800, 1146, 2739
MhlI	GDGCHC	4 cut(s)	510, 637, 1882, 2245
MlyI	GAGTC	4 cut(s)	872, 1790, 2111, 2632
MmeI	TCCRAC	2 cut(s)	37, 2258
Mph1103I	ATGCAT	1 cut(s)	2650
MroI	TCCGGA	3 cut(s)	852, 1702, 2651
MseI	TTAA	8 cut(s)	293, 369, 818, 1109, 1596, 1640, 1965, 2117
MslI	CAYNNNNRTG	3 cut(s)	351, 2437, 2613
MspA1I	CMGCKG	2 cut(s)	221, 2048
MspCI	CTTAAG	1 cut(s)	1964
MspI	CCGG	4 cut(s)	384, 853, 1703, 2652
MspR9I	CCNGG	9 cut(s)	385, 912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
MunI	CAATTG	2 cut(s)	310, 626
Mva1269I	GAATGC	3 cut(s)	266, 1175, 1375
MvaI	CCWGG	8 cut(s)	912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	5 cut(s)	92, 101, 110, 218, 2664
NciI	CCSGG	1 cut(s)	385
NdeI	CATATG	2 cut(s)	1813, 2729
NheI	GCTAGC	1 cut(s)	1439
NlaIII	CATG	7 cut(s)	350, 748, 851, 1093, 2536, 2648, 2764
NmuCI	GTSAC	4 cut(s)	740, 1793, 2086, 2288
NsbI	TGCGCA	1 cut(s)	1174
NsiI	ATGCAT	1 cut(s)	2650
NspI	RCATGY	2 cut(s)	350, 851
PasI	CCCWGGG	2 cut(s)	1564, 2596
PauI	GCGCGC	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	1320
PciI	ACATGT	2 cut(s)	346, 847
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PctI	GAATGC	3 cut(s)	266, 1175, 1375
PflFI	GACNNNGTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	2302
PkrI	GCNGC	6 cut(s)	265, 1293, 2512, 2515, 2642, 2756
PleI	GAGTC	4 cut(s)	872, 1790, 2110, 2631
PmaCI	CACGTG	1 cut(s)	2091
PmlI	CACGTG	1 cut(s)	2091
PpsI	GAGTC	4 cut(s)	872, 1790, 2110, 2631
Ppu21I	YACGTR	1 cut(s)	2091
PpuMI	RGGWCCY	2 cut(s)	753, 2297
PscI	ACATGT	2 cut(s)	346, 847
PshAI	GACNNNNGTC	1 cut(s)	2295
PsiI	TTATAA	1 cut(s)	2219
Psp5II	RGGWCCY	2 cut(s)	753, 2297
Psp6I	CCWGG	8 cut(s)	910, 1563, 1995, 2302, 2315, 2407, 2595, 2700
PspCI	CACGTG	1 cut(s)	2091
PspGI	CCWGG	8 cut(s)	910, 1563, 1995, 2302, 2315, 2407, 2595, 2700
PspOMI	GGGCCC	1 cut(s)	2241
PspPI	GGNCC	8 cut(s)	403, 753, 1086, 2241, 2242, 2297, 2484, 2676
PspPPI	RGGWCCY	2 cut(s)	753, 2297
PstNI	CAGNNNCTG	3 cut(s)	911, 1240, 1748
PsuI	RGATCY	3 cut(s)	800, 1146, 2739
PsyI	GACNNNGTC	1 cut(s)	53
PteI	GCGCGC	1 cut(s)	111
PvuII	CAGCTG	2 cut(s)	221, 2048
RsaI	GTAC	5 cut(s)	480, 1272, 1428, 1561, 2001
RsaNI	GTAC	5 cut(s)	479, 1271, 1427, 1560, 2000
RseI	CAYNNNNRTG	3 cut(s)	351, 2437, 2613
SalI	GTCGAC	2 cut(s)	792, 2564
SaqAI	TTAA	8 cut(s)	293, 369, 818, 1109, 1596, 1640, 1965, 2117
SatI	GCNGC	6 cut(s)	264, 1292, 2511, 2514, 2641, 2755
Sau96I	GGNCC	8 cut(s)	403, 753, 1086, 2241, 2242, 2297, 2484, 2676
SchI	GAGTC	4 cut(s)	872, 1790, 2111, 2632
ScrFI	CCNGG	9 cut(s)	385, 912, 1565, 1997, 2304, 2317, 2409, 2597, 2702
SduI	GDGCHC	4 cut(s)	510, 637, 1882, 2245
SexAI	ACCWGGT	1 cut(s)	2407
SfaNI	GCATC	6 cut(s)	614, 1246, 1888, 1958, 2657, 2667
SfcI	CTRYAG	4 cut(s)	413, 804, 1399, 2025
SinI	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2484
SmiMI	CAYNNNNRTG	3 cut(s)	351, 2437, 2613
SmlI	CTYRAG	5 cut(s)	569, 832, 1573, 1789, 1964
SmoI	CTYRAG	5 cut(s)	569, 832, 1573, 1789, 1964
SseBI	AGGCCT	1 cut(s)	1320
SsiI	CCGC	2 cut(s)	181, 1213
StuI	AGGCCT	1 cut(s)	1320
StyD4I	CCNGG	9 cut(s)	383, 910, 1563, 1995, 2302, 2315, 2407, 2595, 2700
StyI	CCWWGG	2 cut(s)	1387, 1464
TaaI	ACNGT	3 cut(s)	580, 762, 1860
TaiI	ACGT	4 cut(s)	799, 1232, 2093, 2437
TaqI	TCGA	5 cut(s)	147, 256, 793, 1141, 2565
TaqII	GACCGA	1 cut(s)	2198
TatI	WGTACW	2 cut(s)	478, 1270
Tru1I	TTAA	8 cut(s)	293, 369, 818, 1109, 1596, 1640, 1965, 2117
Tru9I	TTAA	8 cut(s)	293, 369, 818, 1109, 1596, 1640, 1965, 2117
TscAI	CASTG	4 cut(s)	1629, 1660, 1734, 2508
TseFI	GTSAC	4 cut(s)	740, 1793, 2086, 2288
TseI	GCWGC	6 cut(s)	263, 1291, 2510, 2513, 2640, 2754
Tsp45I	GTSAC	4 cut(s)	740, 1793, 2086, 2288
TspDTI	ATGAA	7 cut(s)	576, 639, 761, 1043, 1767, 2646, 2749
TspGWI	ACGGA	5 cut(s)	355, 387, 722, 1150, 1444
TspRI	CASTG	4 cut(s)	1629, 1660, 1734, 2508
Tth111I	GACNNNGTC	1 cut(s)	53
Vha464I	CTTAAG	1 cut(s)	1964
VpaK11BI	GGWCC	5 cut(s)	403, 753, 1086, 2297, 2484
XagI	CCTNNNNNAGG	2 cut(s)	1554, 2000
XapI	RAATTY	4 cut(s)	524, 1532, 1850, 2338
XbaI	TCTAGA	2 cut(s)	584, 2684
XceI	RCATGY	2 cut(s)	350, 851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1652
XmiI	GTMKAC	4 cut(s)	412, 793, 1544, 2565
Zsp2I	ATGCAT	1 cut(s)	2650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.