Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Forward (+)

64527992 .. 64528432

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG463100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGGTTTACGTCTTTTTGCTCTACTAGGGTTTTGCCTAGCTGTAAAATTGATCGCGTATGGATTTGGGACTACCGGCCTCTTGGGTCGCCTTGTCCGGCATCGCCTCCGCTTGGCGTCACTGGTTGGCTTTTGCCTTCTCTTCTGTTTTTGTCGAACTTTCTTTCTGAGCTCTGTTACCACGTTCTATGGTGATGGGGGTTCAACACAGGTTCAGCTTGTAGGTCATCTCAAGGATGCAGATGGGTATGTTCGATCTGACGGTTGCGCTGTTGAGTCGGGCCAGATCAAGAGCGCTGATGACGGTGATGGTGGCAGACTCTCTTTCATTAGGGGCGCGGTTGGTGATGGTGTCGTTGCAGGTACTGGGGGTCTGGCCACTGGCAATGTTGTGGATTTGGGCTTGCCGGATTGGAAAGCTAATCTGGTGGTGGAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.27

Weight (kDa)

7.63

Isoelectric Point (pI)

16.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	350
AccII	CGCG	2 cut(s)	56, 338
AciI	CCGC	2 cut(s)	109, 338
AcoI	YGGCCR	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	364
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	204
AluBI	AGCT	4 cut(s)	41, 171, 217, 419
AluI	AGCT	4 cut(s)	41, 171, 217, 419
Alw21I	GWGCWC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	3 cut(s)	76, 280, 375
AspLEI	GCGC	3 cut(s)	269, 296, 338
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	203, 317, 356
BalI	TGGCCA	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	173
BccI	CCATC	4 cut(s)	188, 236, 302, 341
BfaI	CTAG	2 cut(s)	26, 38
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	350
BglII	AGATCT	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	280
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	109, 226
BmuI	ACTGGG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	215
BsaHI	GRCGYC	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	3 cut(s)	126, 370, 385
Bse3DI	GCAATG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	3 cut(s)	126, 370, 385
Bsh1236I	CGCG	2 cut(s)	56, 338
BshFI	GGCC	3 cut(s)	78, 282, 377
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	75, 97, 407
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	3 cut(s)	78, 282, 377
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	51, 254, 285, 435
BspACI	CCGC	2 cut(s)	109, 338
BspANI	GGCC	3 cut(s)	78, 282, 377
BspCNI	CTCAG	1 cut(s)	159
BspFNI	CGCG	2 cut(s)	56, 338
BspMI	ACCTGC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	3 cut(s)	126, 370, 385
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	4 cut(s)	51, 254, 285, 435
BssNI	GRCGYC	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	263, 305
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	2 cut(s)	56, 338
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	3 cut(s)	269, 296, 338
BstKTI	GATC	4 cut(s)	54, 257, 288, 438
BstMBI	GATC	4 cut(s)	51, 254, 285, 435
BstUI	CGCG	2 cut(s)	56, 338
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	3 cut(s)	78, 282, 377
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	119, 378
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	404
CaiI	CAGNNNCTG	1 cut(s)	365
CfoI	GCGC	3 cut(s)	269, 296, 338
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	280
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	363
CviJI	RGCY	9 cut(s)	41, 78, 129, 171, 217, 282, 377, 402, 419
CviKI_1	RGCY	9 cut(s)	41, 78, 129, 171, 217, 282, 377, 402, 419
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	4 cut(s)	53, 256, 287, 437
DpnII	GATC	4 cut(s)	51, 254, 285, 435
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	173
FaiI	YATR	3 cut(s)	60, 189, 249
FaqI	GGGAC	1 cut(s)	82
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	173
FspBI	CTAG	2 cut(s)	26, 38
GlaI	GCGC	3 cut(s)	268, 295, 337
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	78, 282, 377
HapII	CCGG	3 cut(s)	75, 97, 407
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	3 cut(s)	269, 296, 338
Hin1I	GRCGYC	1 cut(s)	116
Hin6I	GCGC	3 cut(s)	267, 294, 336
HinP1I	GCGC	3 cut(s)	267, 294, 336
HinfI	GANTC	2 cut(s)	275, 318
HpaII	CCGG	3 cut(s)	75, 97, 407
HphI	GGTGA	3 cut(s)	203, 317, 356
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	168, 259, 440
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	263, 305
HpyCH4IV	ACGT	2 cut(s)	10, 182
HpyCH4V	TGCA	2 cut(s)	239, 359
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	10, 182
Hsp92I	GRCGYC	1 cut(s)	116
HspAI	GCGC	3 cut(s)	267, 294, 336
Kzo9I	GATC	4 cut(s)	51, 254, 285, 435
LweI	GCATC	2 cut(s)	109, 226
MaeI	CTAG	2 cut(s)	26, 38
MaeII	ACGT	2 cut(s)	10, 182
MaeIII	GTNAC	2 cut(s)	117, 175
MalI	GATC	4 cut(s)	53, 256, 287, 437
MboI	GATC	4 cut(s)	51, 254, 285, 435
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	284, 312
MnlI	CCTC	2 cut(s)	89, 116
Mox20I	TGGCCA	1 cut(s)	377
MscI	TGGCCA	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	377
MspI	CCGG	3 cut(s)	75, 97, 407
MvnI	CGCG	2 cut(s)	56, 338
NdeII	GATC	4 cut(s)	51, 254, 285, 435
NmuCI	GTSAC	1 cut(s)	117
PleI	GAGTC	2 cut(s)	283, 312
PpsI	GAGTC	2 cut(s)	283, 312
Psp124BI	GAGCTC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	365
PsuI	RGATCY	1 cut(s)	435
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	173
Sau3AI	GATC	4 cut(s)	51, 254, 285, 435
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	2 cut(s)	284, 312
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	9 cut(s)	13, 43, 173, 185, 213, 219, 226, 364, 421
SfaNI	GCATC	2 cut(s)	109, 226
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	109, 338
SspMI	CTAG	2 cut(s)	26, 38
SstI	GAGCTC	1 cut(s)	173
TaaI	ACNGT	2 cut(s)	263, 305
TaiI	ACGT	2 cut(s)	13, 185
TaqI	TCGA	2 cut(s)	154, 253
TasI	AATT	1 cut(s)	47
TscAI	CASTG	2 cut(s)	126, 385
TseFI	GTSAC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	126, 385
XspI	CTAG	2 cut(s)	26, 38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.