Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004200

Physical Location & Seq

Genomic Coordinates Reverse (-)

62369617 .. 62371152

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0509300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCATGAGGTTACTAACTCTGAGTTGGGGTTTGCTTCCAGCTTTAACAACAACAGTGGCTTGTCAGGTGTGCCCTCATGGCAAAGACGCCACCCTGCTGAGGAGGTGATTGCAATAACATTTGGTGTCTTGGCGGAAATATTGCTCACAAGTTCTGCAGTCTATTATTACAAAAAGAAGAAGAATCATACATGGCAACCATATGTCTTAGACGGGGCAGAAGGACCGGGTGAGGTAATGGATTTTCAACCACCTGTCTTAGAGGGGCCAGAAGGGCCTGGTGAGGTAATGGATTTTCAACCACCTGTCTTAGAGGGGCCAGAAGGGCCTGGTGAGGTAATGGATTTTCAACATGTCTTAGACGGGGTAGAAGGACCGGGTGAGGTAACGGATTTTGATGATGATCCGCTGCTCAAGCGAAAGAGAGAGGAGGATGTCGTAGGCGGGCCTTCAAAAAAGGCGCGAACTAGGAAAACTTCACAGGTTCCTAGGAGGCGTCCCCTCCCAAGAACCTGCAAGAATAGGGCTACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04150 map03460 map04150

Pfam Domains

Protein Families

Telomere_reg-2

Protein Analysis

178

Amino Acids

19.67

Weight (kDa)

5.29

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48470 AT3G48470
fragaria_vesca	FvH4_5g07361 FvH4_5g07460 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490 FvH4_5g07490
malus_domestica	MD06G1154000.v1.1 MD14G1163600.v1.1
prunus_persica	Prupe.5G157000_v2.0.a1
pyrus_communis	pycom14g13630
rosa_chinensis	RchiOBHm_Chr7g0191161
rosa_laevigata	RLG00000004472
rosa_multiflora	Rmu_co8075350.1_g000001 Rmu_sc0000701.1_g000017 Rmu_sc0001585.1_g000002 Rmu_sc0016007.1_g000006 Rmu_sc0039738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263990
rosa_rugosa	Rorug06G0509300
rosa_samantha	Rh1AG145200 Rh1AG325800 Rh1CG136700 Rh1CG136800 Rh1DG151800 Rh5CG463100 Rh7AG116500 Rh7BG118700 Rh7CG121400 Rh7DG119700
rosa_wichuraiana	Rw1G028870 Rw7G010100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	521
AccII	CGCG	1 cut(s)	463
AciI	CCGC	3 cut(s)	134, 407, 444
AclWI	GGATC	1 cut(s)	398
AcyI	GRCGYC	2 cut(s)	88, 496
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	248, 299, 350, 453
AjnI	CCWGG	2 cut(s)	277, 328
AluBI	AGCT	1 cut(s)	42
AluI	AGCT	1 cut(s)	42
AlwI	GGATC	1 cut(s)	398
AoxI	GGCC	5 cut(s)	266, 275, 317, 326, 446
ApeKI	GCWGC	1 cut(s)	409
AspA2I	CCTAGG	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	463
AspS9I	GGNCC	7 cut(s)	224, 266, 275, 317, 326, 374, 446
AsuC2I	CCSGG	2 cut(s)	228, 378
AsuHPI	GGTGA	5 cut(s)	118, 242, 293, 344, 392
AvaII	GGWCC	2 cut(s)	224, 374
AvrII	CCTAGG	1 cut(s)	488
BaeGI	GKGCMC	1 cut(s)	75
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	396
BciT130I	CCWGG	2 cut(s)	279, 330
BcnI	CCSGG	2 cut(s)	228, 378
BfaI	CTAG	2 cut(s)	468, 489
BfmI	CTRYAG	1 cut(s)	156
BfuAI	ACCTGC	1 cut(s)	521
BglI	GCCNNNNNGGC	3 cut(s)	79, 274, 325
BisI	GCNGC	1 cut(s)	410
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	228, 279, 330, 378
Bme18I	GGWCC	2 cut(s)	224, 374
BmgT120I	GGNCC	7 cut(s)	224, 266, 275, 317, 326, 374, 446
BmiI	GGNNCC	3 cut(s)	267, 318, 486
BmrFI	CCNGG	4 cut(s)	228, 279, 330, 378
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	228, 378
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	88, 496
BsaJI	CCNNGG	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	279, 330
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	1 cut(s)	439
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	12, 90
BseRI	GAGGAG	2 cut(s)	116, 443
BseSI	GKGCMC	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	463
BshFI	GGCC	5 cut(s)	268, 277, 319, 328, 448
BsiSI	CCGG	2 cut(s)	227, 377
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	5 cut(s)	268, 277, 319, 328, 448
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	403
BspACI	CCGC	3 cut(s)	134, 407, 444
BspANI	GGCC	5 cut(s)	268, 277, 319, 328, 448
BspCNI	CTCAG	2 cut(s)	13, 91
BspFNI	CGCG	1 cut(s)	463
BspLI	GGNNCC	3 cut(s)	267, 318, 486
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	1 cut(s)	403
BssNI	GRCGYC	2 cut(s)	88, 496
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	2 cut(s)	279, 330
Bst4CI	ACNGT	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	88, 496
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	6 cut(s)	21, 99, 208, 259, 310, 358
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	463
BstKTI	GATC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 274, 325, 415
BstNI	CCWGG	2 cut(s)	279, 330
BstNSI	RCATGY	1 cut(s)	356
BstSCI	CCNGG	4 cut(s)	226, 277, 328, 376
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	75
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	396
BsuRI	GGCC	5 cut(s)	268, 277, 319, 328, 448
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	1 cut(s)	446
CfoI	GCGC	1 cut(s)	463
Cfr13I	GGNCC	7 cut(s)	224, 266, 275, 317, 326, 374, 446
CseI	GACGC	2 cut(s)	96, 485
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	4 cut(s)	5, 78, 192, 353
CviJI	RGCY	8 cut(s)	42, 60, 268, 277, 319, 328, 448, 527
CviKI_1	RGCY	8 cut(s)	42, 60, 268, 277, 319, 328, 448, 527
DdeI	CTNAG	6 cut(s)	21, 99, 208, 259, 310, 358
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	488
Eco47I	GGWCC	2 cut(s)	224, 374
EcoO109I	RGGNCCY	2 cut(s)	275, 326
EcoRII	CCWGG	2 cut(s)	277, 328
EcoT14I	CCWWGG	1 cut(s)	488
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	4 cut(s)	8, 81, 195, 356
FaiI	YATR	7 cut(s)	6, 79, 189, 193, 202, 204, 354
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	4 cut(s)	4, 77, 191, 352
FauI	CCCGC	1 cut(s)	437
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	410
FspBI	CTAG	2 cut(s)	468, 489
GlaI	GCGC	1 cut(s)	462
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	5 cut(s)	268, 277, 319, 328, 448
HapII	CCGG	2 cut(s)	227, 377
HgaI	GACGC	2 cut(s)	96, 485
HhaI	GCGC	1 cut(s)	463
Hin1I	GRCGYC	2 cut(s)	88, 496
Hin1II	CATG	4 cut(s)	8, 81, 195, 356
Hin6I	GCGC	1 cut(s)	461
HinP1I	GCGC	1 cut(s)	461
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	2 cut(s)	227, 377
HphI	GGTGA	5 cut(s)	118, 242, 293, 344, 392
Hpy188I	TCNGA	1 cut(s)	22
HpyAV	CCTTC	5 cut(s)	215, 266, 317, 365, 459
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	4, 113, 158, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 274, 325, 415
HpyF3I	CTNAG	6 cut(s)	21, 99, 208, 259, 310, 358
Hsp92I	GRCGYC	2 cut(s)	88, 496
Hsp92II	CATG	4 cut(s)	8, 81, 195, 356
HspAI	GCGC	1 cut(s)	461
Kzo9I	GATC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	468, 489
MaeIII	GTNAC	2 cut(s)	10, 385
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	2 cut(s)	190, 193
MhlI	GDGCHC	1 cut(s)	75
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	2 cut(s)	227, 377
MspR9I	CCNGG	4 cut(s)	228, 279, 330, 378
MvaI	CCWGG	2 cut(s)	279, 330
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	4 cut(s)	79, 274, 325, 415
NciI	CCSGG	2 cut(s)	228, 378
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	4 cut(s)	8, 81, 195, 356
NlaIV	GGNNCC	3 cut(s)	267, 318, 486
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	356
PciI	ACATGT	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	411
PscI	ACATGT	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	277, 328
PspGI	CCWGG	2 cut(s)	277, 328
PspN4I	GGNNCC	3 cut(s)	267, 318, 486
PspPI	GGNCC	7 cut(s)	224, 266, 275, 317, 326, 374, 446
PstI	CTGCAG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	7 cut(s)	224, 266, 275, 317, 326, 374, 446
ScrFI	CCNGG	4 cut(s)	228, 279, 330, 378
SduI	GDGCHC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	156
SfiI	GGCCNNNNNGGCC	2 cut(s)	274, 325
SinI	GGWCC	2 cut(s)	224, 374
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SsiI	CCGC	3 cut(s)	134, 407, 444
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	468, 489
StyD4I	CCNGG	4 cut(s)	226, 277, 328, 376
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	1 cut(s)	409
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	224, 374
XceI	RCATGY	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	468, 489
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.