FvH4_5g15290

iq-domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
8651060 .. 8656248
5189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15290.t4

Sequence Viewer

Length: 1773 bp
ATGGGCAAATCACCGGCTAAATGGATCAAGACTGTTCTGTTTGGGAAGAAGTCATCCAAACCTAATATATCAAAAGGAAGAGAGAGAATTTCAAATCAAAAAGAGGTGGTGGTTTCTGCCAGGGAAGCAGGAACTGAATTTGTTTCAAACCCACCTGTGGCTTTTCATGAAAGCACGAACACCACAGATAATAACAGAGGGTTAGAATTGGAGAACAGGGAAGCTCCAAGTGTATTAGGTGATGGGGAGCCAGGAACCCAAAGTACAGATTCACAAGGGTCTACACCACAAAATGCAGTATATGATCCGGAAACAATCAGGCAAGAGCAAGCTGCAACAAAGGCACAGGCTGCCTTTAGGGGTTATCTGGCTCGCCGCGCCTTTTGGGCTCTAAAAGGCATAATAAGGCTACAGGCACTTATCCGTGGGCACTTGGTCAGGAGACAAGCTGTTGCTACACTAGGCAGTATGTTGGGTATTGTCAAGCTACAGGCACTCAGTCGTGGACGACAAGTCAGGCAGTCTAATATTGGTCTTGAAGTGCAAAACAGATGCCATGTGCCGCCTATGGAGGGCAAGCTAGTGGATCCTGTTAGAGTTAATATCTCTACTCAAATGGCAAAGCTAACGGTTAATGTTTTCATTAGTAAGCTTCTTGCTTTCTCACCTATTGTCATGCCTCTGCGTTTACATTATGAACCTGGAGATCCAAATTCAGTTCCAAACTGGTTAGAACGTTGGTCAGCAACCAATTTTTGGAAACCACTTCCCCAACCAAGAAAAGTTCCAGATTCAAAATCTCAGAGAACACATCGGGATCCTCAAACAGGCAGGGTAAAGCGAACCACCCGGAGGCTTCCATCTGCAAATGTTGAAAGTGTGTCGGTGCAAGCAACCTCTGAACCTGAGAAACCCAAACGTATCCTTAGGAAAGTTTCCAGCCAGCCAGCAGATCCAGTGGTAGAAAATCCACAAATTGAGCTTGAAAAGGTTAAACGCAACTTGAGGAAGGTTCATACTCCCATAGTAGAGAACTCCGTGCAGACGGAAGTTGAAACTCAGAATCTTAAACAGAATCTGGAAAAGGCATCAAGTGCTTCAGGTCATAATGTTTTTGAAGGTATCACAGATAACTCTGTTGAGAAGATGAAGAAAGGGCCAATAGATACACCATCCAATCTACCTGATGCAGAAATAACACCCGAAGCATCAGCGCCAAAAGAGGTCTTTGACTTATCATCCCATGATCAGGTTGCAATGGATTTGAAGACTTTGACAGAGGGCACTGGTAAAGAAATAAATACACCTAGTGATGAAGCTGCAGTCGAGTCAAACATATTAACAGAGAGCAGTAAAAAAGATGAAAACATTCCTGTTCCAAATGGGGTTTTGAGCCAGAAGGAAGATTTAACAAGCAATGACAACCATAAATCAAGCAGGAAGACATCAACTCCAGCTAAACAAGAACGTTCAGAGAATGGGTTGCAAAATAGTCCAACATTGCCAAGCTATATGGCAGCAACTGAGTCTGCAAAGGCAAAGCTGAGAGCACAAGGATCTCCTAGGCTTGGACTGGAGGCTACTGAGAAGAATGAGAAAACCAACTCCACTCGCCGTCAATCTCTGCCATCATCAGCTAATGGAAAAATCACTTCACAGTCTCCAAGGACACAGAAACTGGTTCAATCAGGTGGAAAAATCAAAAGTGACAAATCTCTGTCGGCCTCCAGAGACGGAAATGGGAAGGCAAGCCAAGCAGAGTGGAGAAGATGA

Protein Analysis

591

Amino Acids

64.82

Weight (kDa)

9.86

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 474 - 564 3.4e-15 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 756
AccI GTMKAC 1 cut(s) 281
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 2 cut(s) 376, 563
AclI AACGTT 2 cut(s) 736, 1468
AclWI GGATC 9 cut(s) 32, 299, 581, 594, 701, 812, 825, 947, 1564
AcsI RAATTY 3 cut(s) 87, 137, 712
AcuI CTGAAG 1 cut(s) 1083
AdeI CACNNNGTG 1 cut(s) 1310
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 7 cut(s) 157, 572, 756, 827, 852, 1249, 1568
AhdI GACNNNNNGTC 1 cut(s) 512
AjnI CCWGG 3 cut(s) 119, 250, 700
Alw21I GWGCWC 1 cut(s) 1552
Alw26I GTCTC 3 cut(s) 436, 1665, 1725
AlwI GGATC 9 cut(s) 32, 299, 581, 594, 701, 812, 825, 947, 1564
AlwNI CAGNNNCTG 4 cut(s) 134, 1078, 1523, 1678
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 2 cut(s) 1157, 1722
ApeKI GCWGC 4 cut(s) 332, 350, 1319, 1517
ApoI RAATTY 3 cut(s) 87, 137, 712
Asp700I GAANNNNTTC 1 cut(s) 1368
AspA2I CCTAGG 1 cut(s) 1562
AspLEI GCGC 2 cut(s) 380, 1216
AspS9I GGNCC 1 cut(s) 1157
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 3, 251, 657
AvrII CCTAGG 1 cut(s) 1562
AxyI CCTNAGG 1 cut(s) 926
BaeGI GKGCMC 2 cut(s) 432, 1286
BamHI GGATCC 2 cut(s) 586, 817
BanII GRGCYC 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 1274, 1448
Bbv12I GWGCWC 1 cut(s) 1552
BbvI GCAGC 4 cut(s) 319, 337, 1306, 1529
BccI CCATC 4 cut(s) 236, 868, 1180, 1636
BceAI ACGGC 1 cut(s) 1599
BciT130I CCWGG 3 cut(s) 121, 252, 702
BciVI GTATCC 1 cut(s) 932
BclI TGATCA 1 cut(s) 1246
BcnI CCSGG 1 cut(s) 850
BcoDI GTCTC 3 cut(s) 436, 1665, 1725
BfaI CTAG 4 cut(s) 461, 581, 1308, 1563
BfmI CTRYAG 3 cut(s) 410, 488, 1320
BfoI RGCGCY 1 cut(s) 1217
BfuI GTATCC 1 cut(s) 932
BglI GCCNNNNNGGC 1 cut(s) 386
BisI GCNGC 6 cut(s) 333, 351, 376, 563, 1320, 1518
BlnI CCTAGG 1 cut(s) 1562
BlsI GCNGC 6 cut(s) 334, 352, 377, 564, 1321, 1519
Bme1390I CCNGG 4 cut(s) 121, 252, 702, 850
BmeRI GACNNNNNGTC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 1157
BmiI GGNNCC 4 cut(s) 249, 256, 588, 819
BmrFI CCNGG 4 cut(s) 121, 252, 702, 850
BmsI GCATC 4 cut(s) 542, 1097, 1177, 1217
BpiI GAAGAC 2 cut(s) 1274, 1448
BpmI CTGGAG 4 cut(s) 723, 1437, 1595, 1711
BpuEI CTTGAG 1 cut(s) 1024
BpuMI CCSGG 1 cut(s) 850
BsaJI CCNNGG 4 cut(s) 120, 424, 1562, 1664
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 1435, 1465
Bsc4I CCNNNNNNNGG 7 cut(s) 157, 572, 756, 827, 852, 1249, 1568
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 5 cut(s) 731, 956, 1291, 1578, 1683
Bse21I CCTNAGG 1 cut(s) 926
Bse3DI GCAATG 3 cut(s) 1263, 1423, 1499
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 3 cut(s) 121, 252, 702
BseDI CCNNGG 4 cut(s) 120, 424, 1562, 1664
BseGI GGATG 3 cut(s) 53, 1172, 1238
BseLI CCNNNNNNNGG 7 cut(s) 157, 572, 756, 827, 852, 1249, 1568
BseMI GCAATG 3 cut(s) 1263, 1423, 1499
BseMII CTCAG 7 cut(s) 511, 815, 897, 1073, 1515, 1535, 1575
BseNI ACTGG 5 cut(s) 731, 956, 1291, 1578, 1683
BseSI GKGCMC 2 cut(s) 432, 1286
BseXI GCAGC 4 cut(s) 319, 337, 1306, 1529
BsgI GTGCAG 1 cut(s) 1061
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 1159, 1724
BsiHKAI GWGCWC 1 cut(s) 1552
BsiSI CCGG 3 cut(s) 14, 308, 850
BslI CCNNNNNNNGG 7 cut(s) 157, 572, 756, 827, 852, 1249, 1568
BsmAI GTCTC 3 cut(s) 436, 1665, 1725
BsmBI CGTCTC 1 cut(s) 1725
BsnI GGCC 2 cut(s) 1159, 1724
Bsp1286I GDGCHC 4 cut(s) 391, 432, 1286, 1552
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
BspACI CCGC 2 cut(s) 376, 563
BspANI GGCC 2 cut(s) 1159, 1724
BspCNI CTCAG 7 cut(s) 510, 814, 898, 1072, 1516, 1536, 1576
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 4 cut(s) 249, 256, 588, 819
BspMAI CTGCAG 1 cut(s) 1324
BspPI GGATC 9 cut(s) 32, 299, 581, 594, 701, 812, 825, 947, 1564
BsrDI GCAATG 3 cut(s) 1263, 1423, 1499
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 5 cut(s) 731, 956, 1291, 1578, 1683
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 4 cut(s) 120, 424, 1562, 1664
BssMI GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
BssT1I CCWWGG 2 cut(s) 1562, 1664
Bst2UI CCWGG 3 cut(s) 121, 252, 702
Bst4CI ACNGT 3 cut(s) 34, 631, 1659
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 2 cut(s) 350, 1094
BstC8I GCNNGC 7 cut(s) 330, 373, 578, 891, 944, 948, 1750
BstDEI CTNAG 8 cut(s) 497, 801, 906, 926, 1059, 1524, 1544, 1584
BstDSI CCRYGG 1 cut(s) 424
BstENI CCTNNNNNAGG 1 cut(s) 825
BstF5I GGATG 3 cut(s) 53, 1172, 1238
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 1217
BstHHI GCGC 2 cut(s) 380, 1216
BstKTI GATC 8 cut(s) 27, 307, 589, 709, 820, 955, 1249, 1559
BstMAI GTCTC 3 cut(s) 436, 1665, 1725
BstMBI GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
BstMWI GCNNNNNNNGC 7 cut(s) 125, 341, 350, 377, 386, 1094, 1754
BstNI CCWGG 3 cut(s) 121, 252, 702
BstSCI CCNGG 4 cut(s) 119, 250, 700, 848
BstSFI CTRYAG 3 cut(s) 410, 488, 1320
BstSLI GKGCMC 2 cut(s) 432, 1286
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 4 cut(s) 319, 337, 1306, 1529
BstV2I GAAGAC 2 cut(s) 1274, 1448
BstX2I RGATCY 5 cut(s) 586, 706, 817, 952, 1556
BstYI RGATCY 5 cut(s) 586, 706, 817, 952, 1556
Bsu36I CCTNAGG 1 cut(s) 926
BsuI GTATCC 1 cut(s) 932
BsuRI GGCC 2 cut(s) 1159, 1724
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 3 cut(s) 53, 1172, 1238
BtsIMutI CAGTG 2 cut(s) 963, 1284
Cac8I GCNNGC 7 cut(s) 330, 373, 578, 891, 944, 948, 1750
CaiI CAGNNNCTG 4 cut(s) 134, 1078, 1523, 1678
CciI TCATGA 1 cut(s) 166
CfoI GCGC 2 cut(s) 380, 1216
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 1157
Csp6I GTAC 1 cut(s) 264
CspCI CAANNNNNGTGG 1 cut(s) 1742
CviAII CATG 4 cut(s) 167, 557, 676, 1244
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 8 cut(s) 497, 801, 906, 926, 1059, 1524, 1544, 1584
DpnI GATC 8 cut(s) 26, 306, 588, 708, 819, 954, 1248, 1558
DpnII GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
DraIII CACNNNGTG 1 cut(s) 1310
DriI GACNNNNNGTC 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 73
Eam1105I GACNNNNNGTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 1562, 1664
Eco24I GRGCYC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 1083
Eco81I CCTNAGG 1 cut(s) 926
EcoNI CCTNNNNNAGG 1 cut(s) 825
EcoRII CCWGG 3 cut(s) 119, 250, 700
EcoT14I CCWWGG 2 cut(s) 1562, 1664
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 1562, 1664
Esp3I CGTCTC 1 cut(s) 1725
FaeI CATG 4 cut(s) 170, 560, 679, 1247
FatI CATG 4 cut(s) 166, 556, 675, 1243
FbaI TGATCA 1 cut(s) 1246
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 6 cut(s) 333, 351, 376, 563, 1320, 1518
FokI GGATG 3 cut(s) 40, 1159, 1225
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 6 cut(s) 333, 351, 376, 563, 1320, 1518
FspBI CTAG 4 cut(s) 461, 581, 1308, 1563
GlaI GCGC 2 cut(s) 379, 1215
GluI GCNGC 6 cut(s) 333, 351, 376, 563, 1320, 1518
GsuI CTGGAG 4 cut(s) 723, 1437, 1595, 1711
HaeII RGCGCY 1 cut(s) 1217
HaeIII GGCC 2 cut(s) 1159, 1724
HapII CCGG 3 cut(s) 14, 308, 850
HhaI GCGC 2 cut(s) 380, 1216
Hin1II CATG 4 cut(s) 170, 560, 679, 1247
Hin6I GCGC 2 cut(s) 378, 1214
HinP1I GCGC 2 cut(s) 378, 1214
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 6 cut(s) 269, 791, 1063, 1075, 1328, 1526
HpaII CCGG 3 cut(s) 14, 308, 850
HphI GGTGA 3 cut(s) 3, 251, 657
Hpy166II GTNNAC 3 cut(s) 282, 506, 689
Hpy188I TCNGA 4 cut(s) 804, 901, 1062, 1474
Hpy188III TCNNGA 9 cut(s) 28, 167, 308, 439, 536, 788, 815, 1079, 1728
Hpy8I GTNNAC 3 cut(s) 282, 506, 689
HpyAV CCTTC 4 cut(s) 1003, 1112, 1393, 1738
HpyCH4III ACNGT 3 cut(s) 34, 631, 1659
HpyCH4IV ACGT 3 cut(s) 736, 919, 1468
HpyF10VI GCNNNNNNNGC 7 cut(s) 125, 341, 350, 377, 386, 1094, 1754
HpyF3I CTNAG 8 cut(s) 497, 801, 906, 926, 1059, 1524, 1544, 1584
HpySE526I ACGT 3 cut(s) 736, 919, 1468
Hsp92II CATG 4 cut(s) 170, 560, 679, 1247
HspAI GCGC 2 cut(s) 378, 1214
Kpn2I TCCGGA 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 1246
Kzo9I GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
LmnI GCTCC 2 cut(s) 229, 247
Lsp1109I GCAGC 4 cut(s) 319, 337, 1306, 1529
LweI GCATC 4 cut(s) 542, 1097, 1177, 1217
MaeI CTAG 4 cut(s) 461, 581, 1308, 1563
MaeII ACGT 3 cut(s) 736, 919, 1468
MaeIII GTNAC 1 cut(s) 1706
MalI GATC 8 cut(s) 26, 306, 588, 708, 819, 954, 1248, 1558
MboI GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
MboII GAAGA 8 cut(s) 58, 90, 1156, 1162, 1279, 1415, 1453, 1600
MflI RGATCY 5 cut(s) 586, 706, 817, 952, 1556
MhlI GDGCHC 4 cut(s) 391, 432, 1286, 1552
MluCI AATT 6 cut(s) 87, 137, 206, 712, 751, 975
MlyI GAGTC 2 cut(s) 1337, 1535
MmeI TCCRAC 1 cut(s) 1520
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 1368
MseI TTAA 6 cut(s) 600, 633, 993, 1068, 1340, 1409
MspI CCGG 3 cut(s) 14, 308, 850
MspR9I CCNGG 4 cut(s) 121, 252, 702, 850
MvaI CCWGG 3 cut(s) 121, 252, 702
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 7 cut(s) 125, 341, 350, 377, 386, 1094, 1754
NciI CCSGG 1 cut(s) 850
NdeII GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
NlaIII CATG 4 cut(s) 170, 560, 679, 1247
NlaIV GGNNCC 4 cut(s) 249, 256, 588, 819
NmuCI GTSAC 1 cut(s) 1706
PagI TCATGA 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 1368
PfeI GAWTC 4 cut(s) 269, 791, 1063, 1075
PflMI CCANNNNNTGG 1 cut(s) 756
PkrI GCNGC 6 cut(s) 334, 352, 377, 564, 1321, 1519
PleI GAGTC 2 cut(s) 1336, 1534
PpsI GAGTC 2 cut(s) 1336, 1534
Psp1406I AACGTT 2 cut(s) 736, 1468
Psp6I CCWGG 3 cut(s) 119, 250, 700
PspGI CCWGG 3 cut(s) 119, 250, 700
PspN4I GGNNCC 4 cut(s) 249, 256, 588, 819
PspPI GGNCC 1 cut(s) 1157
PsrI GAACNNNNNNTAC 2 cut(s) 247, 279
PstI CTGCAG 1 cut(s) 1324
PstNI CAGNNNCTG 4 cut(s) 134, 1078, 1523, 1678
PsuI RGATCY 5 cut(s) 586, 706, 817, 952, 1556
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SaqAI TTAA 6 cut(s) 600, 633, 993, 1068, 1340, 1409
SatI GCNGC 6 cut(s) 333, 351, 376, 563, 1320, 1518
Sau3AI GATC 8 cut(s) 24, 304, 586, 706, 817, 952, 1246, 1556
Sau96I GGNCC 1 cut(s) 1157
SchI GAGTC 2 cut(s) 1337, 1535
ScrFI CCNGG 4 cut(s) 121, 252, 702, 850
SduI GDGCHC 4 cut(s) 391, 432, 1286, 1552
SfaNI GCATC 4 cut(s) 542, 1097, 1177, 1217
SfcI CTRYAG 3 cut(s) 410, 488, 1320
SmlI CTYRAG 1 cut(s) 1003
SmoI CTYRAG 1 cut(s) 1003
Sse9I AATT 6 cut(s) 87, 137, 206, 712, 751, 975
SsiI CCGC 2 cut(s) 376, 563
SspI AATATT 1 cut(s) 529
SspMI CTAG 4 cut(s) 461, 581, 1308, 1563
StyD4I CCNGG 4 cut(s) 119, 250, 700, 848
StyI CCWWGG 2 cut(s) 1562, 1664
TaaI ACNGT 3 cut(s) 34, 631, 1659
TaiI ACGT 3 cut(s) 739, 922, 1471
TaqI TCGA 1 cut(s) 1326
TasI AATT 6 cut(s) 87, 137, 206, 712, 751, 975
TatI WGTACW 1 cut(s) 263
TauI GCSGC 2 cut(s) 378, 565
TfiI GAWTC 4 cut(s) 269, 791, 1063, 1075
Tru1I TTAA 6 cut(s) 600, 633, 993, 1068, 1340, 1409
Tru9I TTAA 6 cut(s) 600, 633, 993, 1068, 1340, 1409
TscAI CASTG 2 cut(s) 963, 1291
TseFI GTSAC 1 cut(s) 1706
TseI GCWGC 4 cut(s) 332, 350, 1319, 1517
Tsp45I GTSAC 1 cut(s) 1706
TspDTI ATGAA 8 cut(s) 155, 183, 631, 711, 1004, 1163, 1329, 1377
TspGWI ACGGA 4 cut(s) 413, 1027, 1061, 1749
TspRI CASTG 2 cut(s) 963, 1291
Van91I CCANNNNNTGG 1 cut(s) 756
XagI CCTNNNNNAGG 1 cut(s) 825
XapI RAATTY 3 cut(s) 87, 137, 712
XmaJI CCTAGG 1 cut(s) 1562
XmiI GTMKAC 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 1368
XspI CTAG 4 cut(s) 461, 581, 1308, 1563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.