iq-domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18840 AT1G18840 AT1G18840 AT1G74690 |
| fragaria_vesca | FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 |
| malus_domestica | MD06G1189500.v1.1 MD14G1196500.v1.1 |
| prunus_persica | Prupe.5G188300_v2.0.a1 |
| pyrus_communis | pycom06g16840 pycom14g16320 |
| rosa_chinensis | RchiOBHm_Chr7g0180771 |
| rosa_laevigata | RLG00000005231 |
| rosa_multiflora | Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00226750 Rroxscaffold_3G00272540 |
| rosa_rugosa | Rorug06G0435900 |
| rosa_samantha | Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500 |
| rosa_wichuraiana | Rw7G003100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1501 |
| AccB1I | GGYRCC | 1 cut(s) | 1501 |
| AccII | CGCG | 1 cut(s) | 513 |
| AciI | CCGC | 1 cut(s) | 1377 |
| AclI | AACGTT | 1 cut(s) | 1468 |
| AclWI | GGATC | 5 cut(s) | 32, 273, 286, 701, 947 |
| AcsI | RAATTY | 4 cut(s) | 86, 137, 712, 902 |
| AcuI | CTGAAG | 4 cut(s) | 129, 846, 1083, 1335 |
| AdeI | CACNNNGTG | 1 cut(s) | 1310 |
| AfaI | GTAC | 2 cut(s) | 265, 1503 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 756, 1383, 1568 |
| AflIII | ACRYGT | 1 cut(s) | 511 |
| AgsI | TTSAA | 9 cut(s) | 93, 539, 795, 875, 986, 1150, 1267, 1676, 1725 |
| AjnI | CCWGG | 3 cut(s) | 119, 250, 700 |
| Alw21I | GWGCWC | 3 cut(s) | 39, 1286, 1552 |
| Alw26I | GTCTC | 5 cut(s) | 436, 724, 1070, 1656, 1660 |
| AlwI | GGATC | 5 cut(s) | 32, 273, 286, 701, 947 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1078, 1106, 1523, 1669 |
| AoxI | GGCC | 2 cut(s) | 248, 387 |
| ApaI | GGGCCC | 1 cut(s) | 391 |
| ApeKI | GCWGC | 5 cut(s) | 125, 332, 350, 1319, 1517 |
| ApoI | RAATTY | 4 cut(s) | 86, 137, 712, 902 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 934, 1197 |
| Asp718I | GGTACC | 1 cut(s) | 1501 |
| AspA2I | CCTAGG | 1 cut(s) | 1562 |
| AspS9I | GGNCC | 5 cut(s) | 248, 387, 388, 590, 1103 |
| AsuC2I | CCSGG | 2 cut(s) | 377, 815 |
| AsuHPI | GGTGA | 4 cut(s) | 3, 251, 1064, 1256 |
| AvaII | GGWCC | 2 cut(s) | 590, 1103 |
| AvrII | CCTAGG | 1 cut(s) | 1562 |
| BaeGI | GKGCMC | 2 cut(s) | 391, 432 |
| BamHI | GGATCC | 1 cut(s) | 278 |
| BanI | GGYRCC | 1 cut(s) | 1501 |
| BanII | GRGCYC | 1 cut(s) | 391 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 247, 279 |
| BbsI | GAAGAC | 1 cut(s) | 514 |
| Bbv12I | GWGCWC | 3 cut(s) | 39, 1286, 1552 |
| BbvI | GCAGC | 5 cut(s) | 137, 319, 337, 1306, 1529 |
| BccI | CCATC | 3 cut(s) | 236, 1571, 1627 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1311, 1345 |
| BciT130I | CCWGG | 3 cut(s) | 121, 252, 702 |
| BciVI | GTATCC | 1 cut(s) | 1115 |
| BclI | TGATCA | 1 cut(s) | 1246 |
| BcnI | CCSGG | 2 cut(s) | 377, 815 |
| BcoDI | GTCTC | 5 cut(s) | 436, 724, 1070, 1656, 1660 |
| BfaI | CTAG | 4 cut(s) | 368, 584, 1308, 1563 |
| BfmI | CTRYAG | 2 cut(s) | 1254, 1320 |
| BfuI | GTATCC | 1 cut(s) | 1115 |
| BglII | AGATCT | 1 cut(s) | 148 |
| BisI | GCNGC | 5 cut(s) | 126, 333, 351, 1320, 1518 |
| BlnI | CCTAGG | 1 cut(s) | 1562 |
| BlsI | GCNGC | 5 cut(s) | 127, 334, 352, 1321, 1519 |
| Bme1390I | CCNGG | 5 cut(s) | 121, 252, 377, 702, 815 |
| Bme18I | GGWCC | 2 cut(s) | 590, 1103 |
| BmgT120I | GGNCC | 5 cut(s) | 248, 387, 388, 590, 1103 |
| BmiI | GGNNCC | 7 cut(s) | 280, 389, 591, 858, 1158, 1503, 1558 |
| BmrFI | CCNGG | 5 cut(s) | 121, 252, 377, 702, 815 |
| BmrI | ACTGGG | 1 cut(s) | 540 |
| BmsI | GCATC | 4 cut(s) | 283, 542, 666, 1097 |
| BmuI | ACTGGG | 1 cut(s) | 540 |
| BpiI | GAAGAC | 1 cut(s) | 514 |
| BpmI | CTGGAG | 2 cut(s) | 723, 1437 |
| BpuMI | CCSGG | 2 cut(s) | 377, 815 |
| BsaJI | CCNNGG | 4 cut(s) | 120, 424, 1562, 1655 |
| BsaWI | WCCGGW | 3 cut(s) | 592, 849, 955 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 756, 1383, 1568 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 5 cut(s) | 535, 731, 764, 1291, 1674 |
| Bse3DI | GCAATG | 2 cut(s) | 698, 1357 |
| BseBI | CCWGG | 3 cut(s) | 121, 252, 702 |
| BseDI | CCNNGG | 4 cut(s) | 120, 424, 1562, 1655 |
| BseGI | GGATG | 1 cut(s) | 1373 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 756, 1383, 1568 |
| BseMI | GCAATG | 2 cut(s) | 698, 1357 |
| BseMII | CTCAG | 7 cut(s) | 674, 815, 917, 1050, 1535, 1575, 1727 |
| BseNI | ACTGG | 5 cut(s) | 535, 731, 764, 1291, 1674 |
| BseSI | GKGCMC | 2 cut(s) | 391, 432 |
| BseXI | GCAGC | 5 cut(s) | 137, 319, 337, 1306, 1529 |
| BsgI | GTGCAG | 3 cut(s) | 484, 980, 1061 |
| Bsh1236I | CGCG | 1 cut(s) | 513 |
| BshFI | GGCC | 2 cut(s) | 250, 389 |
| BshNI | GGYRCC | 1 cut(s) | 1501 |
| BsiHKAI | GWGCWC | 3 cut(s) | 39, 1286, 1552 |
| BsiSI | CCGG | 7 cut(s) | 14, 129, 376, 593, 815, 850, 956 |
| BslFI | GGGAC | 2 cut(s) | 1005, 1594 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 756, 1383, 1568 |
| BsmAI | GTCTC | 5 cut(s) | 436, 724, 1070, 1656, 1660 |
| BsmFI | GGGAC | 2 cut(s) | 1005, 1594 |
| BsmI | GAATGC | 1 cut(s) | 555 |
| BsnI | GGCC | 2 cut(s) | 250, 389 |
| Bsp120I | GGGCCC | 1 cut(s) | 387 |
| Bsp1286I | GDGCHC | 5 cut(s) | 39, 391, 432, 1286, 1552 |
| Bsp143I | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| BspACI | CCGC | 1 cut(s) | 1377 |
| BspANI | GGCC | 2 cut(s) | 250, 389 |
| BspCNI | CTCAG | 7 cut(s) | 675, 814, 918, 1051, 1536, 1576, 1726 |
| BspFNI | CGCG | 1 cut(s) | 513 |
| BspLI | GGNNCC | 7 cut(s) | 280, 389, 591, 858, 1158, 1503, 1558 |
| BspMAI | CTGCAG | 1 cut(s) | 1324 |
| BspPI | GGATC | 5 cut(s) | 32, 273, 286, 701, 947 |
| BspT107I | GGYRCC | 1 cut(s) | 1501 |
| BsrDI | GCAATG | 2 cut(s) | 698, 1357 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrI | ACTGG | 5 cut(s) | 535, 731, 764, 1291, 1674 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 4 cut(s) | 120, 424, 1562, 1655 |
| BssMI | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| BssT1I | CCWWGG | 2 cut(s) | 1562, 1655 |
| Bst2UI | CCWGG | 3 cut(s) | 121, 252, 702 |
| Bst4CI | ACNGT | 4 cut(s) | 34, 1209, 1501, 1650 |
| Bst6I | CTCTTC | 1 cut(s) | 73 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 350, 1310 |
| BstC8I | GCNNGC | 5 cut(s) | 330, 373, 581, 689, 891 |
| BstDEI | CTNAG | 8 cut(s) | 184, 683, 801, 926, 1059, 1544, 1584, 1713 |
| BstDSI | CCRYGG | 1 cut(s) | 424 |
| BstEII | GGTNACC | 1 cut(s) | 362 |
| BstF5I | GGATG | 1 cut(s) | 1373 |
| BstFNI | CGCG | 1 cut(s) | 513 |
| BstKTI | GATC | 6 cut(s) | 27, 151, 281, 709, 955, 1249 |
| BstMAI | GTCTC | 5 cut(s) | 436, 724, 1070, 1656, 1660 |
| BstMBI | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| BstNI | CCWGG | 3 cut(s) | 121, 252, 702 |
| BstPI | GGTNACC | 1 cut(s) | 362 |
| BstSCI | CCNGG | 5 cut(s) | 119, 250, 375, 700, 813 |
| BstSFI | CTRYAG | 2 cut(s) | 1254, 1320 |
| BstSLI | GKGCMC | 2 cut(s) | 391, 432 |
| BstUI | CGCG | 1 cut(s) | 513 |
| BstV1I | GCAGC | 5 cut(s) | 137, 319, 337, 1306, 1529 |
| BstV2I | GAAGAC | 1 cut(s) | 514 |
| BstX2I | RGATCY | 4 cut(s) | 148, 278, 706, 952 |
| BstYI | RGATCY | 4 cut(s) | 148, 278, 706, 952 |
| BsuI | GTATCC | 1 cut(s) | 1115 |
| BsuRI | GGCC | 2 cut(s) | 250, 389 |
| BtgI | CCRYGG | 1 cut(s) | 424 |
| BtsCI | GGATG | 1 cut(s) | 1373 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 3 cut(s) | 303, 891, 1284 |
| Cac8I | GCNNGC | 5 cut(s) | 330, 373, 581, 689, 891 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1078, 1106, 1523, 1669 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 5 cut(s) | 248, 387, 388, 590, 1103 |
| CseI | GACGC | 1 cut(s) | 519 |
| Csp6I | GTAC | 2 cut(s) | 264, 1502 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 1739 |
| CviQI | GTAC | 2 cut(s) | 264, 1502 |
| DdeI | CTNAG | 8 cut(s) | 184, 683, 801, 926, 1059, 1544, 1584, 1713 |
| DpnI | GATC | 6 cut(s) | 26, 150, 280, 708, 954, 1248 |
| DpnII | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| DraIII | CACNNNGTG | 1 cut(s) | 1310 |
| Eam1104I | CTCTTC | 1 cut(s) | 73 |
| EarI | CTCTTC | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 2 cut(s) | 1562, 1655 |
| Eco24I | GRGCYC | 1 cut(s) | 391 |
| Eco47I | GGWCC | 2 cut(s) | 590, 1103 |
| Eco57I | CTGAAG | 4 cut(s) | 129, 846, 1083, 1335 |
| Eco91I | GGTNACC | 1 cut(s) | 362 |
| EcoO109I | RGGNCCY | 2 cut(s) | 388, 1103 |
| EcoO65I | GGTNACC | 1 cut(s) | 362 |
| EcoRII | CCWGG | 3 cut(s) | 119, 250, 700 |
| EcoT14I | CCWWGG | 2 cut(s) | 1562, 1655 |
| EcoT22I | ATGCAT | 1 cut(s) | 557 |
| EcoT38I | GRGCYC | 1 cut(s) | 391 |
| ErhI | CCWWGG | 2 cut(s) | 1562, 1655 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 966, 998 |
| FaqI | GGGAC | 2 cut(s) | 1005, 1594 |
| FbaI | TGATCA | 1 cut(s) | 1246 |
| Fnu4HI | GCNGC | 5 cut(s) | 126, 333, 351, 1320, 1518 |
| FokI | GGATG | 1 cut(s) | 1360 |
| FriOI | GRGCYC | 1 cut(s) | 391 |
| Fsp4HI | GCNGC | 5 cut(s) | 126, 333, 351, 1320, 1518 |
| FspBI | CTAG | 4 cut(s) | 368, 584, 1308, 1563 |
| GluI | GCNGC | 5 cut(s) | 126, 333, 351, 1320, 1518 |
| GsuI | CTGGAG | 2 cut(s) | 723, 1437 |
| HaeIII | GGCC | 2 cut(s) | 250, 389 |
| HapII | CCGG | 7 cut(s) | 14, 129, 376, 593, 815, 850, 956 |
| HgaI | GACGC | 1 cut(s) | 519 |
| HindIII | AAGCTT | 1 cut(s) | 650 |
| HinfI | GANTC | 8 cut(s) | 315, 610, 791, 1063, 1075, 1168, 1328, 1526 |
| HpaII | CCGG | 7 cut(s) | 14, 129, 376, 593, 815, 850, 956 |
| HphI | GGTGA | 4 cut(s) | 3, 251, 1064, 1256 |
| Hpy166II | GTNNAC | 1 cut(s) | 698 |
| Hpy188I | TCNGA | 8 cut(s) | 148, 320, 526, 684, 804, 901, 1275, 1474 |
| Hpy188III | TCNNGA | 5 cut(s) | 788, 1079, 1106, 1202, 1725 |
| Hpy8I | GTNNAC | 1 cut(s) | 698 |
| Hpy99I | CGWCG | 1 cut(s) | 1608 |
| HpyAV | CCTTC | 7 cut(s) | 870, 1003, 1043, 1112, 1147, 1724, 1758 |
| HpyCH4III | ACNGT | 4 cut(s) | 34, 1209, 1501, 1650 |
| HpyCH4IV | ACGT | 3 cut(s) | 919, 997, 1468 |
| HpyF3I | CTNAG | 8 cut(s) | 184, 683, 801, 926, 1059, 1544, 1584, 1713 |
| HpySE526I | ACGT | 3 cut(s) | 919, 997, 1468 |
| KpnI | GGTACC | 1 cut(s) | 1505 |
| Ksp22I | TGATCA | 1 cut(s) | 1246 |
| Kzo9I | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| LmnI | GCTCC | 4 cut(s) | 131, 229, 1156, 1562 |
| Lsp1109I | GCAGC | 5 cut(s) | 137, 319, 337, 1306, 1529 |
| LweI | GCATC | 4 cut(s) | 283, 542, 666, 1097 |
| MaeI | CTAG | 4 cut(s) | 368, 584, 1308, 1563 |
| MaeII | ACGT | 3 cut(s) | 919, 997, 1468 |
| MaeIII | GTNAC | 3 cut(s) | 362, 408, 920 |
| MalI | GATC | 6 cut(s) | 26, 150, 280, 708, 954, 1248 |
| MboI | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| MboII | GAAGA | 8 cut(s) | 90, 135, 519, 1162, 1271, 1345, 1415, 1437 |
| MflI | RGATCY | 4 cut(s) | 148, 278, 706, 952 |
| MhlI | GDGCHC | 5 cut(s) | 39, 391, 432, 1286, 1552 |
| MluCI | AATT | 9 cut(s) | 86, 137, 206, 712, 902, 1000, 1145, 1197, 1590 |
| MluI | ACGCGT | 1 cut(s) | 511 |
| MlyI | GAGTC | 4 cut(s) | 604, 1072, 1084, 1337 |
| MmeI | TCCRAC | 2 cut(s) | 577, 1520 |
| Mph1103I | ATGCAT | 1 cut(s) | 557 |
| MroXI | GAANNNNTTC | 2 cut(s) | 934, 1197 |
| MseI | TTAA | 5 cut(s) | 483, 648, 1230, 1340, 1593 |
| MspI | CCGG | 7 cut(s) | 14, 129, 376, 593, 815, 850, 956 |
| MspR9I | CCNGG | 5 cut(s) | 121, 252, 377, 702, 815 |
| Mva1269I | GAATGC | 1 cut(s) | 555 |
| MvaI | CCWGG | 3 cut(s) | 121, 252, 702 |
| MvnI | CGCG | 1 cut(s) | 513 |
| NciI | CCSGG | 2 cut(s) | 377, 815 |
| NdeII | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| NlaIV | GGNNCC | 7 cut(s) | 280, 389, 591, 858, 1158, 1503, 1558 |
| NsiI | ATGCAT | 1 cut(s) | 557 |
| PctI | GAATGC | 1 cut(s) | 555 |
| PdmI | GAANNNNTTC | 2 cut(s) | 934, 1197 |
| PfeI | GAWTC | 4 cut(s) | 315, 791, 1168, 1526 |
| PkrI | GCNGC | 5 cut(s) | 127, 334, 352, 1321, 1519 |
| PleI | GAGTC | 4 cut(s) | 604, 1071, 1083, 1336 |
| PpsI | GAGTC | 4 cut(s) | 604, 1071, 1083, 1336 |
| PpuMI | RGGWCCY | 1 cut(s) | 1103 |
| Psp1406I | AACGTT | 1 cut(s) | 1468 |
| Psp5II | RGGWCCY | 1 cut(s) | 1103 |
| Psp6I | CCWGG | 3 cut(s) | 119, 250, 700 |
| PspEI | GGTNACC | 1 cut(s) | 362 |
| PspGI | CCWGG | 3 cut(s) | 119, 250, 700 |
| PspN4I | GGNNCC | 7 cut(s) | 280, 389, 591, 858, 1158, 1503, 1558 |
| PspOMI | GGGCCC | 1 cut(s) | 387 |
| PspPI | GGNCC | 5 cut(s) | 248, 387, 388, 590, 1103 |
| PspPPI | RGGWCCY | 1 cut(s) | 1103 |
| PstI | CTGCAG | 1 cut(s) | 1324 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1078, 1106, 1523, 1669 |
| PsuI | RGATCY | 4 cut(s) | 148, 278, 706, 952 |
| RsaI | GTAC | 2 cut(s) | 265, 1503 |
| RsaNI | GTAC | 2 cut(s) | 264, 1502 |
| SaqAI | TTAA | 5 cut(s) | 483, 648, 1230, 1340, 1593 |
| SatI | GCNGC | 5 cut(s) | 126, 333, 351, 1320, 1518 |
| Sau3AI | GATC | 6 cut(s) | 24, 148, 278, 706, 952, 1246 |
| Sau96I | GGNCC | 5 cut(s) | 248, 387, 388, 590, 1103 |
| SchI | GAGTC | 4 cut(s) | 604, 1072, 1084, 1337 |
| ScrFI | CCNGG | 5 cut(s) | 121, 252, 377, 702, 815 |
| SduI | GDGCHC | 5 cut(s) | 39, 391, 432, 1286, 1552 |
| SfaNI | GCATC | 4 cut(s) | 283, 542, 666, 1097 |
| SfcI | CTRYAG | 2 cut(s) | 1254, 1320 |
| SinI | GGWCC | 2 cut(s) | 590, 1103 |
| Sse9I | AATT | 9 cut(s) | 86, 137, 206, 712, 902, 1000, 1145, 1197, 1590 |
| SsiI | CCGC | 1 cut(s) | 1377 |
| SspI | AATATT | 1 cut(s) | 67 |
| SspMI | CTAG | 4 cut(s) | 368, 584, 1308, 1563 |
| StyD4I | CCNGG | 5 cut(s) | 119, 250, 375, 700, 813 |
| StyI | CCWWGG | 2 cut(s) | 1562, 1655 |
| TaaI | ACNGT | 4 cut(s) | 34, 1209, 1501, 1650 |
| TaiI | ACGT | 3 cut(s) | 922, 1000, 1471 |
| TaqI | TCGA | 2 cut(s) | 608, 1331 |
| TasI | AATT | 9 cut(s) | 86, 137, 206, 712, 902, 1000, 1145, 1197, 1590 |
| TatI | WGTACW | 1 cut(s) | 263 |
| TfiI | GAWTC | 4 cut(s) | 315, 791, 1168, 1526 |
| Tru1I | TTAA | 5 cut(s) | 483, 648, 1230, 1340, 1593 |
| Tru9I | TTAA | 5 cut(s) | 483, 648, 1230, 1340, 1593 |
| TscAI | CASTG | 3 cut(s) | 303, 891, 1291 |
| TseI | GCWGC | 5 cut(s) | 125, 332, 350, 1319, 1517 |
| TspDTI | ATGAA | 4 cut(s) | 155, 631, 1004, 1377 |
| TspGWI | ACGGA | 1 cut(s) | 413 |
| TspRI | CASTG | 3 cut(s) | 303, 891, 1291 |
| VpaK11BI | GGWCC | 2 cut(s) | 590, 1103 |
| XapI | RAATTY | 4 cut(s) | 86, 137, 712, 902 |
| XmaJI | CCTAGG | 1 cut(s) | 1562 |
| XmnI | GAANNNNTTC | 2 cut(s) | 934, 1197 |
| XspI | CTAG | 4 cut(s) | 368, 584, 1308, 1563 |
| Zsp2I | ATGCAT | 1 cut(s) | 557 |