Prupe.5G188300_v2.0.a1

iq-domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
15503996 .. 15508971
4976 bp
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UTR
Exon/CDS
Intron
Prupe.5G188300.1

Sequence Viewer

Length: 1770 bp
ATGGGCAAATCACCGGCAAAATGGATCAAAACTGTGCTCTTTGGAAAGAAATCGTCAAAAGCTAATATTCCTAAAGGAAGAGAGAAATTTTCAAATGAGAAAGAAGTGGTGGTTGCTTCCAGGGCAGCCGGAGCTGAATTTTCTTCAGATCTACCTTTGGCTTTTCATCAAAACACCAACACCTTAGAGGACAACATAGGATTAGAATTGGAGAACAAAGAAGCTCCAAATGTATTGGGTGATGGAGGGCCAGGAAGTCAAAGTACAGAAATACAAGGATCCACACCACAAGATGCAGTGTATGACCCTGAAAGAATCAGACAAGAGCAAGCTGCAACAAAGGCACAGGCTGCCTTTAGGGGTTACCTAGCACGCCGGGCATTTTGGGCCCTCAAAGGCATAATAAGGTTACAGGCACTTATCCGTGGGCACTTGGTTAGGAGACAAGCTGTTGCTACTCTGTGCAGTATGGTGGGCATTGTTAAGTTTCAGGCACTCATTCGTGGAAGACGCGTGAGGCAGTCTGATACTGGGCTTGAAGTGCAAAAAAGATGCATTCTGCCTCTGGTAAATGAGGGCAAGCTAGTGGGTCCGGTTGGAGATACATCGACTCAAATGGCAAAGCTGTCAGCAAATGTTTTCATTTTTAAGCTTCTTGCCTTGTCGCCTCCTGTGATGCCTCTGAGCTTGCAATGTGAACCTGGAGATCCAAATTCAGTCTCAAACTGGTTAGAGCGTTGGTCAGCAACCCATTTTTGGAAACCAGTTCCCCAACCAAGAAAAGTTCCAGATTCAAAATCTCAGAGAAAGCACCCGGAGGCTCAAACAGGCAGGGTAAAGCGAAGCAACCGGAGGGTTCCTTCAGCAAATGTTGAAAGTGTATCAGTGCAAGCCACCTCTGAATTTGAGAAACCCAAACGTAACCTGAGAAAAGTTTCTACCCATACAACAGATCCGGTGCAGGAAAATCCACAAGTTGAGCTTGAAAAGGTCAAACGTAATTTGAGGAAGGTTCATAGTCCCATAGTAGAGAACTCTGTGCAGACAGAAGGTGAAGCTGAGAGTCTCAAACAGAGTCTGGAAAAGGCATCAAGCACTTCAGGTCCTGATGTTTTGGAAGGATACACTAATAACTCTGTTGAGAAATTGAAGAAGGAGCCAACTTGGATTCTGTCCAATCAACCTGATACAGAAACAATTCCTGAACCGTCAGCAACAAAAGAGGTATTTAATCTATCATCTGGTGATCAAGCTGTAGAAGATTTGAAGCCTCTGACAGAGAGCACTGGTAAGGATATAAATGCACCTAGTGCTGAAGCTGCAGTTGAGTCGAAGATATTAACAGAGAGCAATGGAAATGATGAAAATATCTCATCCGCAAACGGGGTTTTGAGCCAAAAAGAAGATTTGACAACCAATGACAACCAGAAATCCAGCAGGAAATCTTCTACTCCAGCCAAACAAGAACGTTCAGAGAATGGGTTGCAAAGCAGTCCAACGGTACCAAGTTATATGGCAGCAACTGAATCTGCAAAGGCAAAGCTGAGAGCACAAGGCTCCCCTAGGTTTGGACAAGATGGGACTGAGAAAATTAACTCCACTCGTCGTCATTCTCTCCCATCATCAACTAATAGCAAAATCAGCTCACAGTCTCCAAGGACACAGAGACTGGTTCAAGCAGTTGGCAAAGGAGGAAATAAAAGTGAGAGAACTCAGCCAACTTCAAGAGAAGGAAATGGAAAGGCAACCCAAGCAGAGTGGAGAAGGTGA

Protein Analysis

590

Amino Acids

64.41

Weight (kDa)

9.7

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1501
AccB1I GGYRCC 1 cut(s) 1501
AccII CGCG 1 cut(s) 513
AciI CCGC 1 cut(s) 1377
AclI AACGTT 1 cut(s) 1468
AclWI GGATC 5 cut(s) 32, 273, 286, 701, 947
AcsI RAATTY 4 cut(s) 86, 137, 712, 902
AcuI CTGAAG 4 cut(s) 129, 846, 1083, 1335
AdeI CACNNNGTG 1 cut(s) 1310
AfaI GTAC 2 cut(s) 265, 1503
AfiI CCNNNNNNNGG 3 cut(s) 756, 1383, 1568
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 9 cut(s) 93, 539, 795, 875, 986, 1150, 1267, 1676, 1725
AjnI CCWGG 3 cut(s) 119, 250, 700
Alw21I GWGCWC 3 cut(s) 39, 1286, 1552
Alw26I GTCTC 5 cut(s) 436, 724, 1070, 1656, 1660
AlwI GGATC 5 cut(s) 32, 273, 286, 701, 947
AlwNI CAGNNNCTG 4 cut(s) 1078, 1106, 1523, 1669
AoxI GGCC 2 cut(s) 248, 387
ApaI GGGCCC 1 cut(s) 391
ApeKI GCWGC 5 cut(s) 125, 332, 350, 1319, 1517
ApoI RAATTY 4 cut(s) 86, 137, 712, 902
Asp700I GAANNNNTTC 2 cut(s) 934, 1197
Asp718I GGTACC 1 cut(s) 1501
AspA2I CCTAGG 1 cut(s) 1562
AspS9I GGNCC 5 cut(s) 248, 387, 388, 590, 1103
AsuC2I CCSGG 2 cut(s) 377, 815
AsuHPI GGTGA 4 cut(s) 3, 251, 1064, 1256
AvaII GGWCC 2 cut(s) 590, 1103
AvrII CCTAGG 1 cut(s) 1562
BaeGI GKGCMC 2 cut(s) 391, 432
BamHI GGATCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 1501
BanII GRGCYC 1 cut(s) 391
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
BbsI GAAGAC 1 cut(s) 514
Bbv12I GWGCWC 3 cut(s) 39, 1286, 1552
BbvI GCAGC 5 cut(s) 137, 319, 337, 1306, 1529
BccI CCATC 3 cut(s) 236, 1571, 1627
BcgI CGANNNNNNTGC 2 cut(s) 1311, 1345
BciT130I CCWGG 3 cut(s) 121, 252, 702
BciVI GTATCC 1 cut(s) 1115
BclI TGATCA 1 cut(s) 1246
BcnI CCSGG 2 cut(s) 377, 815
BcoDI GTCTC 5 cut(s) 436, 724, 1070, 1656, 1660
BfaI CTAG 4 cut(s) 368, 584, 1308, 1563
BfmI CTRYAG 2 cut(s) 1254, 1320
BfuI GTATCC 1 cut(s) 1115
BglII AGATCT 1 cut(s) 148
BisI GCNGC 5 cut(s) 126, 333, 351, 1320, 1518
BlnI CCTAGG 1 cut(s) 1562
BlsI GCNGC 5 cut(s) 127, 334, 352, 1321, 1519
Bme1390I CCNGG 5 cut(s) 121, 252, 377, 702, 815
Bme18I GGWCC 2 cut(s) 590, 1103
BmgT120I GGNCC 5 cut(s) 248, 387, 388, 590, 1103
BmiI GGNNCC 7 cut(s) 280, 389, 591, 858, 1158, 1503, 1558
BmrFI CCNGG 5 cut(s) 121, 252, 377, 702, 815
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 4 cut(s) 283, 542, 666, 1097
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 514
BpmI CTGGAG 2 cut(s) 723, 1437
BpuMI CCSGG 2 cut(s) 377, 815
BsaJI CCNNGG 4 cut(s) 120, 424, 1562, 1655
BsaWI WCCGGW 3 cut(s) 592, 849, 955
Bsc4I CCNNNNNNNGG 3 cut(s) 756, 1383, 1568
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 5 cut(s) 535, 731, 764, 1291, 1674
Bse3DI GCAATG 2 cut(s) 698, 1357
BseBI CCWGG 3 cut(s) 121, 252, 702
BseDI CCNNGG 4 cut(s) 120, 424, 1562, 1655
BseGI GGATG 1 cut(s) 1373
BseLI CCNNNNNNNGG 3 cut(s) 756, 1383, 1568
BseMI GCAATG 2 cut(s) 698, 1357
BseMII CTCAG 7 cut(s) 674, 815, 917, 1050, 1535, 1575, 1727
BseNI ACTGG 5 cut(s) 535, 731, 764, 1291, 1674
BseSI GKGCMC 2 cut(s) 391, 432
BseXI GCAGC 5 cut(s) 137, 319, 337, 1306, 1529
BsgI GTGCAG 3 cut(s) 484, 980, 1061
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 2 cut(s) 250, 389
BshNI GGYRCC 1 cut(s) 1501
BsiHKAI GWGCWC 3 cut(s) 39, 1286, 1552
BsiSI CCGG 7 cut(s) 14, 129, 376, 593, 815, 850, 956
BslFI GGGAC 2 cut(s) 1005, 1594
BslI CCNNNNNNNGG 3 cut(s) 756, 1383, 1568
BsmAI GTCTC 5 cut(s) 436, 724, 1070, 1656, 1660
BsmFI GGGAC 2 cut(s) 1005, 1594
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 2 cut(s) 250, 389
Bsp120I GGGCCC 1 cut(s) 387
Bsp1286I GDGCHC 5 cut(s) 39, 391, 432, 1286, 1552
Bsp143I GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
BspACI CCGC 1 cut(s) 1377
BspANI GGCC 2 cut(s) 250, 389
BspCNI CTCAG 7 cut(s) 675, 814, 918, 1051, 1536, 1576, 1726
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 7 cut(s) 280, 389, 591, 858, 1158, 1503, 1558
BspMAI CTGCAG 1 cut(s) 1324
BspPI GGATC 5 cut(s) 32, 273, 286, 701, 947
BspT107I GGYRCC 1 cut(s) 1501
BsrDI GCAATG 2 cut(s) 698, 1357
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 5 cut(s) 535, 731, 764, 1291, 1674
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 4 cut(s) 120, 424, 1562, 1655
BssMI GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
BssT1I CCWWGG 2 cut(s) 1562, 1655
Bst2UI CCWGG 3 cut(s) 121, 252, 702
Bst4CI ACNGT 4 cut(s) 34, 1209, 1501, 1650
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 2 cut(s) 350, 1310
BstC8I GCNNGC 5 cut(s) 330, 373, 581, 689, 891
BstDEI CTNAG 8 cut(s) 184, 683, 801, 926, 1059, 1544, 1584, 1713
BstDSI CCRYGG 1 cut(s) 424
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 1 cut(s) 1373
BstFNI CGCG 1 cut(s) 513
BstKTI GATC 6 cut(s) 27, 151, 281, 709, 955, 1249
BstMAI GTCTC 5 cut(s) 436, 724, 1070, 1656, 1660
BstMBI GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
BstNI CCWGG 3 cut(s) 121, 252, 702
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 5 cut(s) 119, 250, 375, 700, 813
BstSFI CTRYAG 2 cut(s) 1254, 1320
BstSLI GKGCMC 2 cut(s) 391, 432
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 5 cut(s) 137, 319, 337, 1306, 1529
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 4 cut(s) 148, 278, 706, 952
BstYI RGATCY 4 cut(s) 148, 278, 706, 952
BsuI GTATCC 1 cut(s) 1115
BsuRI GGCC 2 cut(s) 250, 389
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 1 cut(s) 1373
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 303, 891, 1284
Cac8I GCNNGC 5 cut(s) 330, 373, 581, 689, 891
CaiI CAGNNNCTG 4 cut(s) 1078, 1106, 1523, 1669
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 5 cut(s) 248, 387, 388, 590, 1103
CseI GACGC 1 cut(s) 519
Csp6I GTAC 2 cut(s) 264, 1502
CspCI CAANNNNNGTGG 1 cut(s) 1739
CviQI GTAC 2 cut(s) 264, 1502
DdeI CTNAG 8 cut(s) 184, 683, 801, 926, 1059, 1544, 1584, 1713
DpnI GATC 6 cut(s) 26, 150, 280, 708, 954, 1248
DpnII GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
DraIII CACNNNGTG 1 cut(s) 1310
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 1562, 1655
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 590, 1103
Eco57I CTGAAG 4 cut(s) 129, 846, 1083, 1335
Eco91I GGTNACC 1 cut(s) 362
EcoO109I RGGNCCY 2 cut(s) 388, 1103
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 3 cut(s) 119, 250, 700
EcoT14I CCWWGG 2 cut(s) 1562, 1655
EcoT22I ATGCAT 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 1562, 1655
FalI AAGNNNNNCTT 2 cut(s) 966, 998
FaqI GGGAC 2 cut(s) 1005, 1594
FbaI TGATCA 1 cut(s) 1246
Fnu4HI GCNGC 5 cut(s) 126, 333, 351, 1320, 1518
FokI GGATG 1 cut(s) 1360
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 5 cut(s) 126, 333, 351, 1320, 1518
FspBI CTAG 4 cut(s) 368, 584, 1308, 1563
GluI GCNGC 5 cut(s) 126, 333, 351, 1320, 1518
GsuI CTGGAG 2 cut(s) 723, 1437
HaeIII GGCC 2 cut(s) 250, 389
HapII CCGG 7 cut(s) 14, 129, 376, 593, 815, 850, 956
HgaI GACGC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 8 cut(s) 315, 610, 791, 1063, 1075, 1168, 1328, 1526
HpaII CCGG 7 cut(s) 14, 129, 376, 593, 815, 850, 956
HphI GGTGA 4 cut(s) 3, 251, 1064, 1256
Hpy166II GTNNAC 1 cut(s) 698
Hpy188I TCNGA 8 cut(s) 148, 320, 526, 684, 804, 901, 1275, 1474
Hpy188III TCNNGA 5 cut(s) 788, 1079, 1106, 1202, 1725
Hpy8I GTNNAC 1 cut(s) 698
Hpy99I CGWCG 1 cut(s) 1608
HpyAV CCTTC 7 cut(s) 870, 1003, 1043, 1112, 1147, 1724, 1758
HpyCH4III ACNGT 4 cut(s) 34, 1209, 1501, 1650
HpyCH4IV ACGT 3 cut(s) 919, 997, 1468
HpyF3I CTNAG 8 cut(s) 184, 683, 801, 926, 1059, 1544, 1584, 1713
HpySE526I ACGT 3 cut(s) 919, 997, 1468
KpnI GGTACC 1 cut(s) 1505
Ksp22I TGATCA 1 cut(s) 1246
Kzo9I GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
LmnI GCTCC 4 cut(s) 131, 229, 1156, 1562
Lsp1109I GCAGC 5 cut(s) 137, 319, 337, 1306, 1529
LweI GCATC 4 cut(s) 283, 542, 666, 1097
MaeI CTAG 4 cut(s) 368, 584, 1308, 1563
MaeII ACGT 3 cut(s) 919, 997, 1468
MaeIII GTNAC 3 cut(s) 362, 408, 920
MalI GATC 6 cut(s) 26, 150, 280, 708, 954, 1248
MboI GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
MboII GAAGA 8 cut(s) 90, 135, 519, 1162, 1271, 1345, 1415, 1437
MflI RGATCY 4 cut(s) 148, 278, 706, 952
MhlI GDGCHC 5 cut(s) 39, 391, 432, 1286, 1552
MluCI AATT 9 cut(s) 86, 137, 206, 712, 902, 1000, 1145, 1197, 1590
MluI ACGCGT 1 cut(s) 511
MlyI GAGTC 4 cut(s) 604, 1072, 1084, 1337
MmeI TCCRAC 2 cut(s) 577, 1520
Mph1103I ATGCAT 1 cut(s) 557
MroXI GAANNNNTTC 2 cut(s) 934, 1197
MseI TTAA 5 cut(s) 483, 648, 1230, 1340, 1593
MspI CCGG 7 cut(s) 14, 129, 376, 593, 815, 850, 956
MspR9I CCNGG 5 cut(s) 121, 252, 377, 702, 815
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 3 cut(s) 121, 252, 702
MvnI CGCG 1 cut(s) 513
NciI CCSGG 2 cut(s) 377, 815
NdeII GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
NlaIV GGNNCC 7 cut(s) 280, 389, 591, 858, 1158, 1503, 1558
NsiI ATGCAT 1 cut(s) 557
PctI GAATGC 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 934, 1197
PfeI GAWTC 4 cut(s) 315, 791, 1168, 1526
PkrI GCNGC 5 cut(s) 127, 334, 352, 1321, 1519
PleI GAGTC 4 cut(s) 604, 1071, 1083, 1336
PpsI GAGTC 4 cut(s) 604, 1071, 1083, 1336
PpuMI RGGWCCY 1 cut(s) 1103
Psp1406I AACGTT 1 cut(s) 1468
Psp5II RGGWCCY 1 cut(s) 1103
Psp6I CCWGG 3 cut(s) 119, 250, 700
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 119, 250, 700
PspN4I GGNNCC 7 cut(s) 280, 389, 591, 858, 1158, 1503, 1558
PspOMI GGGCCC 1 cut(s) 387
PspPI GGNCC 5 cut(s) 248, 387, 388, 590, 1103
PspPPI RGGWCCY 1 cut(s) 1103
PstI CTGCAG 1 cut(s) 1324
PstNI CAGNNNCTG 4 cut(s) 1078, 1106, 1523, 1669
PsuI RGATCY 4 cut(s) 148, 278, 706, 952
RsaI GTAC 2 cut(s) 265, 1503
RsaNI GTAC 2 cut(s) 264, 1502
SaqAI TTAA 5 cut(s) 483, 648, 1230, 1340, 1593
SatI GCNGC 5 cut(s) 126, 333, 351, 1320, 1518
Sau3AI GATC 6 cut(s) 24, 148, 278, 706, 952, 1246
Sau96I GGNCC 5 cut(s) 248, 387, 388, 590, 1103
SchI GAGTC 4 cut(s) 604, 1072, 1084, 1337
ScrFI CCNGG 5 cut(s) 121, 252, 377, 702, 815
SduI GDGCHC 5 cut(s) 39, 391, 432, 1286, 1552
SfaNI GCATC 4 cut(s) 283, 542, 666, 1097
SfcI CTRYAG 2 cut(s) 1254, 1320
SinI GGWCC 2 cut(s) 590, 1103
Sse9I AATT 9 cut(s) 86, 137, 206, 712, 902, 1000, 1145, 1197, 1590
SsiI CCGC 1 cut(s) 1377
SspI AATATT 1 cut(s) 67
SspMI CTAG 4 cut(s) 368, 584, 1308, 1563
StyD4I CCNGG 5 cut(s) 119, 250, 375, 700, 813
StyI CCWWGG 2 cut(s) 1562, 1655
TaaI ACNGT 4 cut(s) 34, 1209, 1501, 1650
TaiI ACGT 3 cut(s) 922, 1000, 1471
TaqI TCGA 2 cut(s) 608, 1331
TasI AATT 9 cut(s) 86, 137, 206, 712, 902, 1000, 1145, 1197, 1590
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 4 cut(s) 315, 791, 1168, 1526
Tru1I TTAA 5 cut(s) 483, 648, 1230, 1340, 1593
Tru9I TTAA 5 cut(s) 483, 648, 1230, 1340, 1593
TscAI CASTG 3 cut(s) 303, 891, 1291
TseI GCWGC 5 cut(s) 125, 332, 350, 1319, 1517
TspDTI ATGAA 4 cut(s) 155, 631, 1004, 1377
TspGWI ACGGA 1 cut(s) 413
TspRI CASTG 3 cut(s) 303, 891, 1291
VpaK11BI GGWCC 2 cut(s) 590, 1103
XapI RAATTY 4 cut(s) 86, 137, 712, 902
XmaJI CCTAGG 1 cut(s) 1562
XmnI GAANNNNTTC 2 cut(s) 934, 1197
XspI CTAG 4 cut(s) 368, 584, 1308, 1563
Zsp2I ATGCAT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.