Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8401147.1

Orthogroup ID

OG0005039

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 711

Gene Structure 711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8401147.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 466 bp

tagtgatgaagctgcagttgagtcaaacatattaacagagagcagtaaaaaagatgaaaacatccctgttccaagtgtggttttgagccaaaaggaagatttaacaagcaatgacaaccagaaatcaagcaggaaaacttcaactccagccaaacaagaacgttcagagaatgggttgcaaaacagtccaacattgccaagctatatggcagcaactgagtctgcaaaggcaaagctgagggcacaaggatctcctaggcttggactggaggctactgaaaagactgagaaaactaactccactcgccgccattctctgccatcatcagctaatggcaaaatcacttcacagtctccaaggacacagaaacttgttcaatcaggtggaaaaggaggaatcaaaggtgacaaatctctgtcagcctcaagagacgggaaggcaagccaagcagagtggagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

154

Amino Acids

16.5

Weight (kDa)

9.84

Isoelectric Point (pI)

73.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18840 AT1G18840 AT1G18840 AT1G74690
fragaria_vesca	FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290
malus_domestica	MD06G1189500.v1.1 MD14G1196500.v1.1
prunus_persica	Prupe.5G188300_v2.0.a1
pyrus_communis	pycom06g16840 pycom14g16320
rosa_chinensis	RchiOBHm_Chr7g0180771
rosa_laevigata	RLG00000005231
rosa_multiflora	Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226750 Rroxscaffold_3G00272540
rosa_rugosa	Rorug06G0435900
rosa_samantha	Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500
rosa_wichuraiana	Rw7G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AclI	AACGTT	1 cut(s)	161
AclWI	GGATC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	142, 378
AluBI	AGCT	4 cut(s)	12, 202, 236, 330
AluI	AGCT	4 cut(s)	12, 202, 236, 330
Alw26I	GTCTC	2 cut(s)	358, 424
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	12, 210
AspA2I	CCTAGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	417
AvrII	CCTAGG	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	358, 424
BfaI	CTAG	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	13
BisI	GCNGC	3 cut(s)	13, 211, 308
BlnI	CCTAGG	1 cut(s)	255
BlsI	GCNGC	3 cut(s)	14, 212, 309
BpmI	CTGGAG	2 cut(s)	130, 288
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	255, 357
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	271
Bse3DI	GCAATG	2 cut(s)	116, 192
BseDI	CCNNGG	2 cut(s)	255, 357
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	116, 192
BseMII	CTCAG	3 cut(s)	208, 228, 277
BseNI	ACTGG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	358, 424
BsmBI	CGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	308
BspCNI	CTCAG	3 cut(s)	209, 229, 278
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	257
BsrDI	GCAATG	2 cut(s)	116, 192
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	255, 357
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	2 cut(s)	255, 357
Bst4CI	ACNGT	2 cut(s)	186, 352
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	217, 237, 286
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	2 cut(s)	358, 424
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	216
CspCI	CAANNNNNGTGG	1 cut(s)	435
DdeI	CTNAG	3 cut(s)	217, 237, 286
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	255, 357
EcoT14I	CCWWGG	2 cut(s)	255, 357
ErhI	CCWWGG	2 cut(s)	255, 357
Esp3I	CGTCTC	1 cut(s)	424
FaiI	YATR	3 cut(s)	30, 205, 207
Fnu4HI	GCNGC	3 cut(s)	13, 211, 308
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	13, 211, 308
FspBI	CTAG	1 cut(s)	256
GluI	GCNGC	3 cut(s)	13, 211, 308
GsuI	CTGGAG	2 cut(s)	130, 288
HinfI	GANTC	3 cut(s)	21, 219, 397
HphI	GGTGA	1 cut(s)	417
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	186, 352
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	15, 179, 225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	447
HpyF3I	CTNAG	3 cut(s)	217, 237, 286
HpySE526I	ACGT	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	249
LpnPI	CCDG	6 cut(s)	79, 116, 132, 160, 252, 367
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	256
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	108
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	30, 228
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	232, 263, 387, 434
MseI	TTAA	2 cut(s)	33, 102
MwoI	GCNNNNNNNGC	1 cut(s)	447
NdeII	GATC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	3 cut(s)	14, 212, 309
PleI	GAGTC	2 cut(s)	29, 227
PpsI	GAGTC	2 cut(s)	29, 227
Psp1406I	AACGTT	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	33, 102
SatI	GCNGC	3 cut(s)	13, 211, 308
Sau3AI	GATC	1 cut(s)	249
SchI	GAGTC	2 cut(s)	30, 228
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	7 cut(s)	14, 164, 204, 238, 332, 386, 407
SfcI	CTRYAG	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	256
StyI	CCWWGG	2 cut(s)	255, 357
TaaI	ACNGT	2 cut(s)	186, 352
TaiI	ACGT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	33, 102
Tru9I	TTAA	2 cut(s)	33, 102
TseFI	GTSAC	1 cut(s)	405
TseI	GCWGC	2 cut(s)	12, 210
Tsp45I	GTSAC	1 cut(s)	405
TspDTI	ATGAA	2 cut(s)	22, 70
XmaJI	CCTAGG	1 cut(s)	255
XspI	CTAG	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.