Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030245.1

Orthogroup ID

OG0005039

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1651

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030245.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ctgaactcatgggaaagggaaagttggtttagggatttggaaggttgttctacttgtacatttgaaaacgggcttcaggattgtgtgttattagccttcctgcaatgggcaaatcaccggctaaatggatcaagactgttctgtttgggaagaagccatccaaacctaatatatcaaaaggaagagagagaatttcaaatgagaaagaggtggtggttgctgccagggcagctgcaactgaatttgttgcagatccacctgcagcttttcatgaaagcacaaacaccacagcttataacaaaggcgtatgatcctgacaaaatcagacaagagcaagctgcaacaaaggcacaggctgcctttaggggttatctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

125

Amino Acids

14.86

Weight (kDa)

9.05

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18840 AT1G18840 AT1G18840 AT1G74690
fragaria_vesca	FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290
malus_domestica	MD06G1189500.v1.1 MD14G1196500.v1.1
prunus_persica	Prupe.5G188300_v2.0.a1
pyrus_communis	pycom06g16840 pycom14g16320
rosa_chinensis	RchiOBHm_Chr7g0180771
rosa_laevigata	RLG00000005231
rosa_multiflora	Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226750 Rroxscaffold_3G00272540
rosa_rugosa	Rorug06G0435900
rosa_samantha	Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500
rosa_wichuraiana	Rw7G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AarI	CACCTGC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	267
AclWI	GGATC	3 cut(s)	136, 247, 305
AcsI	RAATTY	2 cut(s)	191, 241
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	65, 197
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	4 cut(s)	232, 265, 292, 338
AluI	AGCT	4 cut(s)	232, 265, 292, 338
AlwI	GGATC	3 cut(s)	136, 247, 305
ApeKI	GCWGC	6 cut(s)	220, 229, 232, 262, 338, 356
ApoI	RAATTY	2 cut(s)	191, 241
AsuHPI	GGTGA	1 cut(s)	107
BbvI	GCAGC	6 cut(s)	207, 219, 241, 274, 325, 343
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	6 cut(s)	221, 230, 233, 263, 339, 357
BlsI	GCNGC	6 cut(s)	222, 231, 234, 264, 340, 358
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMI	GCAATG	1 cut(s)	110
BseXI	GCAGC	6 cut(s)	207, 219, 241, 274, 325, 343
BsiSI	CCGG	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	128, 252, 310
BspHI	TCATGA	1 cut(s)	270
BspMAI	CTGCAG	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	136, 247, 305
BsrDI	GCAATG	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	224
BssMI	GATC	3 cut(s)	128, 252, 310
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	138
Bst6I	CTCTTC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	3 cut(s)	131, 255, 313
BstMBI	GATC	3 cut(s)	128, 252, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 229, 347, 356
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	6 cut(s)	207, 219, 241, 274, 325, 343
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	336
CciI	TCATGA	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	2 cut(s)	9, 271
CviJI	RGCY	9 cut(s)	73, 95, 121, 156, 232, 265, 292, 338, 356
CviKI_1	RGCY	9 cut(s)	73, 95, 121, 156, 232, 265, 292, 338, 356
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	3 cut(s)	130, 254, 312
DpnII	GATC	3 cut(s)	128, 252, 310
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	2 cut(s)	12, 274
FaiI	YATR	5 cut(s)	10, 172, 272, 296, 309
FatI	CATG	2 cut(s)	8, 270
Fnu4HI	GCNGC	6 cut(s)	221, 230, 233, 263, 339, 357
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	6 cut(s)	221, 230, 233, 263, 339, 357
GluI	GCNGC	6 cut(s)	221, 230, 233, 263, 339, 357
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	2 cut(s)	12, 274
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	326
Hpy188III	TCNNGA	4 cut(s)	77, 132, 271, 314
HpyAV	CCTTC	2 cut(s)	35, 106
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	103, 235, 250, 262, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 229, 347, 356
Hsp92II	CATG	2 cut(s)	12, 274
Kzo9I	GATC	3 cut(s)	128, 252, 310
LpnPI	CCDG	8 cut(s)	62, 113, 131, 210, 237, 272, 327, 338
Lsp1109I	GCAGC	6 cut(s)	207, 219, 241, 274, 325, 343
MalI	GATC	3 cut(s)	130, 254, 312
MboI	GATC	3 cut(s)	128, 252, 310
MboII	GAAGA	2 cut(s)	162, 194
MflI	RGATCY	1 cut(s)	252
MluCI	AATT	2 cut(s)	191, 241
MnlI	CCTC	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	226, 229, 347, 356
NdeII	GATC	3 cut(s)	128, 252, 310
NlaIII	CATG	2 cut(s)	12, 274
PagI	TCATGA	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	267
PkrI	GCNGC	6 cut(s)	222, 231, 234, 264, 340, 358
PsiI	TTATAA	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SatI	GCNGC	6 cut(s)	221, 230, 233, 263, 339, 357
Sau3AI	GATC	3 cut(s)	128, 252, 310
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	8 cut(s)	46, 168, 212, 234, 261, 267, 294, 340
SfcI	CTRYAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	191, 241
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	138
TasI	AATT	2 cut(s)	191, 241
TatI	WGTACW	1 cut(s)	56
TseI	GCWGC	6 cut(s)	220, 229, 232, 262, 338, 356
TspDTI	ATGAA	2 cut(s)	259, 287
XapI	RAATTY	2 cut(s)	191, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.