pycom06g16840

iq-domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
20960801 .. 20963549
2749 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16840.2

Sequence Viewer

Length: 1725 bp
ATGGGCAAATCGCCGGCAAAATGGATCAAAACGGTGCTCTTTGGAAAGAAATCTTCAAAAGCTGGCATTCCTAAAGGAAGAGAGAAAATTTCAAATGAGAAAGAGGTGGTGGTTGCCGCCAGGGCAACTGGAGCTGATTATTCTTCGGATCCACCTGTGGCTTTCCATGAAACCACCAACACCATAGATAACAACCGAGAATTAGAATTGGAGAACAAGGAAACTCCAAGTGTATTAAGTGATGGAAGTCCAGGAATTCAAAGTATAGAAACACAAGGATCCGCGCCACATGATTTGGTGCCGCTTGATCCTGAGAGAATCAGGCAAGAGCAAGCTGCAACAAAGGCACAGGCTGCCTTTAGGGGTTATCTAGCACTTATCCGTGGGCACCTGGTTCGGAGGCAAGCTGTTGCTACTTTGTTCAGTATGACGGGCATTGTCAAGTGTCAGGCGCTCGCTCGTGGAAAACGGGTGAGGCAGTCTGATAATGGGCTTCAAGTGCAAAACATATGCAGTGTGATGCCTCTGGAGGGCAAGTTAGTGAGTCCTGTTGGAGTTAATACGTCAGTTCAAATGGCAAAGCTGTCAGCAAATGTTTTCATTCTCAAGCTTCTTGCTTTCTCACTTACTGTGATGCCTCTGAGTTTGCAATATGAACCTGGGAATCCAAATTCAGTCTCAAACTGGTTGGAACGATGGTCAGCAACCTACTTTTGGAAACCAGTTCCCCAACCAAGGAAAGTTCCAGATCCAAAATCTCAGAGAAAGCACCCGGAGGCTCAAACAGGCAGGGTAAAGCGCAATAGCCGGAGGCTTTCTTCTGCAAATGTTGAAAGTGTCTCGGTGCAAGCAACCTCTGAATTTGAGAAACCCAAGCGTAACCTTAGAAAAGTTCCTAGCCATCATACAGATCCAGTGCAGGAAAACCCACAAGTTGAGCTTGAAAAGGTTAAGCGTAATTTGAGGAAGGTTCATAGTCCCATTGTAGAGAACTCTGTGCAGGCAGAAAGTGAAGCTGAGGGTATCAAGCAGAGTTTGGAAAAGGCATCAAGCACTTTGGTTCCTGATGTTGTCGAAGGCACTAGTAACTCTGTCGAGAAGTTTAAGAAAGAGCCAACCTGGATTCCATCCAGTCGGCCTGATACAGAAATAATCCCTGAACCATGGGCACCTAAAGAGGTATTTAACATATCATCTATCAATCAAGCTGCAGAAGATCTGAAGCCTTTGACAGATAGCACTAGTAAAGATGTGAATATGCCTAGTGCTGAAGCTGCAATTGAGTCCAAGATTTTAACGGAGAGCAATGGTCAGGATGAAAATATCTCATCCTCAAACGGGGTTTTGAACCAAAAGGAAGATTTAACAACCAATGACAACCAGAAATCTAACAGGAAATCTTCTACTCCAGCAAAACAAGAACATTCGGAGAATGGGTTGCAAAGCAGTCCAACAGTACCAAGTTATATGGCAGCAACTGAATCTGCAAAGGCAAAGCTCAGAGCACAAGGCTCCCCTAGGTTGGCACAAGATGTGACTGACAAAAATAACTCCACTCGCCGTCATTCTCTGTCATCAGCAACTAATGCCAAAATCAGCTCACATTCACCAAGGACACGACGACTTGTTCAAACAGGTGGCAAAGGAGGAACTAAAAGCGACAGACCTCTGGCAACTTCGAGCGATGGAAATGGAAAGGTAACCCAAGCAGGATGGAGAAGGTGA

Protein Analysis

575

Amino Acids

62.74

Weight (kDa)

9.69

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 298, 387, 1168
AccII CGCG 1 cut(s) 284
AciI CCGC 3 cut(s) 117, 282, 302
AclWI GGATC 8 cut(s) 32, 143, 156, 273, 286, 302, 743, 905
AcsI RAATTY 4 cut(s) 87, 255, 670, 860
AcuI CTGAAG 2 cut(s) 1241, 1290
AfaI GTAC 1 cut(s) 1458
AfiI CCNNNNNNNGG 5 cut(s) 530, 714, 735, 1338, 1522
AgsI TTSAA 9 cut(s) 57, 93, 260, 497, 572, 833, 944, 1348, 1631
AhlI ACTAGT 2 cut(s) 1082, 1241
AjnI CCWGG 5 cut(s) 119, 250, 390, 658, 1118
Alw21I GWGCWC 2 cut(s) 39, 1507
Alw26I GTCTC 2 cut(s) 682, 844
AlwI GGATC 8 cut(s) 32, 143, 156, 273, 286, 302, 743, 905
AlwNI CAGNNNCTG 1 cut(s) 1478
AoxI GGCC 1 cut(s) 1136
ApeKI GCWGC 5 cut(s) 335, 353, 1208, 1274, 1472
ApoI RAATTY 4 cut(s) 87, 255, 670, 860
AspA2I CCTAGG 1 cut(s) 1517
AspLEI GCGC 3 cut(s) 286, 454, 801
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 484, 1599
AvrII CCTAGG 1 cut(s) 1517
BaeGI GKGCMC 2 cut(s) 390, 1171
BamHI GGATCC 2 cut(s) 148, 278
BanI GGYRCC 3 cut(s) 298, 387, 1168
BauI CACGAG 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 39, 1507
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 5 cut(s) 322, 340, 1195, 1261, 1484
BccI CCATC 6 cut(s) 236, 690, 909, 1135, 1679, 1707
BceAI ACGGC 1 cut(s) 1545
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 5 cut(s) 121, 252, 392, 660, 1120
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 2 cut(s) 682, 844
BcuI ACTAGT 2 cut(s) 1082, 1241
BfaI CTAG 6 cut(s) 371, 897, 1083, 1242, 1263, 1518
BfmI CTRYAG 1 cut(s) 1209
BfoI RGCGCY 1 cut(s) 455
BglI GCCNNNNNGGC 1 cut(s) 122
BglII AGATCT 1 cut(s) 1216
BisI GCNGC 7 cut(s) 117, 302, 336, 354, 1209, 1275, 1473
BlnI CCTAGG 1 cut(s) 1517
BlsI GCNGC 7 cut(s) 118, 303, 337, 355, 1210, 1276, 1474
Bme1390I CCNGG 6 cut(s) 121, 252, 392, 660, 773, 1120
BmiI GGNNCC 7 cut(s) 150, 280, 300, 389, 1062, 1170, 1513
BmrFI CCNGG 6 cut(s) 121, 252, 392, 660, 773, 1120
BmsI GCATC 3 cut(s) 510, 624, 1055
BpmI CTGGAG 3 cut(s) 150, 548, 1392
Bpu10I CCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 1 cut(s) 773
BsaJI CCNNGG 7 cut(s) 120, 382, 659, 734, 1163, 1517, 1610
BsaXI ACNNNNNCTCC 4 cut(s) 521, 551, 1421, 1451
Bsc4I CCNNNNNNNGG 5 cut(s) 530, 714, 735, 1338, 1522
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 5 cut(s) 133, 689, 722, 914, 1131
Bse3DI GCAATG 1 cut(s) 1312
BseBI CCWGG 5 cut(s) 121, 252, 392, 660, 1120
BseDI CCNNGG 7 cut(s) 120, 382, 659, 734, 1163, 1517, 1610
BseGI GGATG 4 cut(s) 1127, 1321, 1328, 1718
BseLI CCNNNNNNNGG 5 cut(s) 530, 714, 735, 1338, 1522
BseMI GCAATG 1 cut(s) 1312
BseMII CTCAG 5 cut(s) 303, 632, 773, 1008, 1513
BseNI ACTGG 5 cut(s) 133, 689, 722, 914, 1131
BseSI GKGCMC 2 cut(s) 390, 1171
BseXI GCAGC 5 cut(s) 322, 340, 1195, 1261, 1484
BsgI GTGCAG 2 cut(s) 938, 1019
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 1 cut(s) 1138
BshNI GGYRCC 3 cut(s) 298, 387, 1168
BsiHKAI GWGCWC 2 cut(s) 39, 1507
BsiSI CCGG 3 cut(s) 14, 773, 808
BslFI GGGAC 1 cut(s) 963
BslI CCNNNNNNNGG 5 cut(s) 530, 714, 735, 1338, 1522
BsmAI GTCTC 2 cut(s) 682, 844
BsmFI GGGAC 1 cut(s) 963
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 1 cut(s) 1138
Bsp1286I GDGCHC 4 cut(s) 39, 390, 1171, 1507
Bsp143I GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
Bsp19I CCATGG 1 cut(s) 1163
BspACI CCGC 3 cut(s) 117, 282, 302
BspANI GGCC 1 cut(s) 1138
BspCNI CTCAG 5 cut(s) 304, 633, 772, 1009, 1512
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 7 cut(s) 150, 280, 300, 389, 1062, 1170, 1513
BspMAI CTGCAG 1 cut(s) 1213
BspPI GGATC 8 cut(s) 32, 143, 156, 273, 286, 302, 743, 905
BspT107I GGYRCC 3 cut(s) 298, 387, 1168
BsrDI GCAATG 1 cut(s) 1312
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 5 cut(s) 133, 689, 722, 914, 1131
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 7 cut(s) 120, 382, 659, 734, 1163, 1517, 1610
BssMI GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 4 cut(s) 734, 1163, 1517, 1610
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 5 cut(s) 121, 252, 392, 660, 1120
Bst4CI ACNGT 3 cut(s) 34, 631, 1456
Bst6I CTCTTC 1 cut(s) 73
BstAPI GCANNNNNTGC 2 cut(s) 353, 1586
BstC8I GCNNGC 7 cut(s) 15, 64, 333, 405, 456, 849, 1002
BstDEI CTNAG 6 cut(s) 312, 641, 759, 884, 1017, 1499
BstDSI CCRYGG 2 cut(s) 382, 1163
BstEII GGTNACC 1 cut(s) 1699
BstF5I GGATG 4 cut(s) 1127, 1321, 1328, 1718
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 3 cut(s) 286, 454, 801
BstKTI GATC 7 cut(s) 27, 151, 281, 310, 751, 913, 1219
BstMAI GTCTC 2 cut(s) 682, 844
BstMBI GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
BstMWI GCNNNNNNNGC 7 cut(s) 122, 131, 344, 353, 499, 1274, 1586
BstNI CCWGG 5 cut(s) 121, 252, 392, 660, 1120
BstPI GGTNACC 1 cut(s) 1699
BstSCI CCNGG 6 cut(s) 119, 250, 390, 658, 771, 1118
BstSFI CTRYAG 1 cut(s) 1209
BstSLI GKGCMC 2 cut(s) 390, 1171
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 5 cut(s) 322, 340, 1195, 1261, 1484
BstX2I RGATCY 5 cut(s) 148, 278, 748, 910, 1216
BstYI RGATCY 5 cut(s) 148, 278, 748, 910, 1216
BsuRI GGCC 1 cut(s) 1138
BtgI CCRYGG 2 cut(s) 382, 1163
BtgZI GCGATG 1 cut(s) 1698
BtsCI GGATG 4 cut(s) 1127, 1321, 1328, 1718
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 520, 921
Cac8I GCNNGC 7 cut(s) 15, 64, 333, 405, 456, 849, 1002
CaiI CAGNNNCTG 1 cut(s) 1478
CfoI GCGC 3 cut(s) 286, 454, 801
Cfr10I RCCGGY 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 390
Csp6I GTAC 1 cut(s) 1457
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 3 cut(s) 167, 290, 1164
CviQI GTAC 1 cut(s) 1457
DdeI CTNAG 6 cut(s) 312, 641, 759, 884, 1017, 1499
DpnI GATC 7 cut(s) 26, 150, 280, 309, 750, 912, 1218
DpnII GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
Eco130I CCWWGG 4 cut(s) 734, 1163, 1517, 1610
Eco57I CTGAAG 2 cut(s) 1241, 1290
Eco91I GGTNACC 1 cut(s) 1699
EcoO65I GGTNACC 1 cut(s) 1699
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 5 cut(s) 119, 250, 390, 658, 1118
EcoT14I CCWWGG 4 cut(s) 734, 1163, 1517, 1610
ErhI CCWWGG 4 cut(s) 734, 1163, 1517, 1610
FaeI CATG 3 cut(s) 170, 293, 1167
FalI AAGNNNNNCTT 2 cut(s) 924, 956
FaqI GGGAC 1 cut(s) 963
FatI CATG 3 cut(s) 166, 289, 1163
FauNDI CATATG 1 cut(s) 509
Fnu4HI GCNGC 7 cut(s) 117, 302, 336, 354, 1209, 1275, 1473
FokI GGATG 3 cut(s) 1114, 1315, 1328
Fsp4HI GCNGC 7 cut(s) 117, 302, 336, 354, 1209, 1275, 1473
FspBI CTAG 6 cut(s) 371, 897, 1083, 1242, 1263, 1518
GlaI GCGC 3 cut(s) 285, 453, 800
GluI GCNGC 7 cut(s) 117, 302, 336, 354, 1209, 1275, 1473
GsuI CTGGAG 3 cut(s) 150, 548, 1392
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 1138
HapII CCGG 3 cut(s) 14, 773, 808
HhaI GCGC 3 cut(s) 286, 454, 801
Hin1II CATG 3 cut(s) 170, 293, 1167
Hin6I GCGC 3 cut(s) 284, 452, 799
HinP1I GCGC 3 cut(s) 284, 452, 799
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 6 cut(s) 318, 544, 664, 1123, 1283, 1481
HpaII CCGG 3 cut(s) 14, 773, 808
HphI GGTGA 2 cut(s) 484, 1599
Hpy188I TCNGA 9 cut(s) 148, 399, 484, 642, 762, 859, 1221, 1429, 1502
Hpy188III TCNNGA 6 cut(s) 311, 527, 746, 1064, 1096, 1313
Hpy99I CGWCG 1 cut(s) 1623
HpyAV CCTTC 3 cut(s) 961, 1070, 1713
HpyCH4III ACNGT 3 cut(s) 34, 631, 1456
HpyCH4IV ACGT 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 7 cut(s) 122, 131, 344, 353, 499, 1274, 1586
HpyF3I CTNAG 6 cut(s) 312, 641, 759, 884, 1017, 1499
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 3 cut(s) 170, 293, 1167
HspAI GCGC 3 cut(s) 284, 452, 799
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Kzo9I GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
LmnI GCTCC 2 cut(s) 131, 1517
Lsp1109I GCAGC 5 cut(s) 322, 340, 1195, 1261, 1484
LweI GCATC 3 cut(s) 510, 624, 1055
MabI ACCWGGT 1 cut(s) 390
MaeI CTAG 6 cut(s) 371, 897, 1083, 1242, 1263, 1518
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 4 cut(s) 878, 1085, 1534, 1699
MalI GATC 7 cut(s) 26, 150, 280, 309, 750, 912, 1218
MboI GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
MboII GAAGA 7 cut(s) 45, 90, 135, 810, 1226, 1370, 1392
MfeI CAATTG 1 cut(s) 1278
MflI RGATCY 5 cut(s) 148, 278, 748, 910, 1216
MhlI GDGCHC 4 cut(s) 39, 390, 1171, 1507
MluCI AATT 8 cut(s) 87, 200, 206, 255, 670, 860, 958, 1278
MlyI GAGTC 2 cut(s) 553, 1292
MmeI TCCRAC 3 cut(s) 532, 669, 1475
MroNI GCCGGC 1 cut(s) 13
MseI TTAA 7 cut(s) 236, 558, 951, 1104, 1185, 1295, 1364
MspI CCGG 3 cut(s) 14, 773, 808
MspR9I CCNGG 6 cut(s) 121, 252, 392, 660, 773, 1120
MunI CAATTG 1 cut(s) 1278
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 5 cut(s) 121, 252, 392, 660, 1120
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 7 cut(s) 122, 131, 344, 353, 499, 1274, 1586
NaeI GCCGGC 1 cut(s) 15
NciI CCSGG 1 cut(s) 773
NcoI CCATGG 1 cut(s) 1163
NdeI CATATG 1 cut(s) 509
NdeII GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
NgoMIV GCCGGC 1 cut(s) 13
NlaIII CATG 3 cut(s) 170, 293, 1167
NlaIV GGNNCC 7 cut(s) 150, 280, 300, 389, 1062, 1170, 1513
NmuCI GTSAC 1 cut(s) 1534
PctI GAATGC 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 4 cut(s) 318, 664, 1123, 1481
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 7 cut(s) 118, 303, 337, 355, 1210, 1276, 1474
PleI GAGTC 2 cut(s) 552, 1291
PpsI GAGTC 2 cut(s) 552, 1291
Psp6I CCWGG 5 cut(s) 119, 250, 390, 658, 1118
PspEI GGTNACC 1 cut(s) 1699
PspGI CCWGG 5 cut(s) 119, 250, 390, 658, 1118
PspN4I GGNNCC 7 cut(s) 150, 280, 300, 389, 1062, 1170, 1513
PstI CTGCAG 1 cut(s) 1213
PstNI CAGNNNCTG 1 cut(s) 1478
PsuI RGATCY 5 cut(s) 148, 278, 748, 910, 1216
RsaI GTAC 1 cut(s) 1458
RsaNI GTAC 1 cut(s) 1457
SaqAI TTAA 7 cut(s) 236, 558, 951, 1104, 1185, 1295, 1364
SatI GCNGC 7 cut(s) 117, 302, 336, 354, 1209, 1275, 1473
Sau3AI GATC 7 cut(s) 24, 148, 278, 307, 748, 910, 1216
SchI GAGTC 2 cut(s) 553, 1292
ScrFI CCNGG 6 cut(s) 121, 252, 392, 660, 773, 1120
SduI GDGCHC 4 cut(s) 39, 390, 1171, 1507
SexAI ACCWGGT 1 cut(s) 390
SfaNI GCATC 3 cut(s) 510, 624, 1055
SfcI CTRYAG 1 cut(s) 1209
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SpeI ACTAGT 2 cut(s) 1082, 1241
Sse9I AATT 8 cut(s) 87, 200, 206, 255, 670, 860, 958, 1278
SsiI CCGC 3 cut(s) 117, 282, 302
SspMI CTAG 6 cut(s) 371, 897, 1083, 1242, 1263, 1518
StyD4I CCNGG 6 cut(s) 119, 250, 390, 658, 771, 1118
StyI CCWWGG 4 cut(s) 734, 1163, 1517, 1610
TaaI ACNGT 3 cut(s) 34, 631, 1456
TaiI ACGT 1 cut(s) 566
TaqI TCGA 3 cut(s) 1074, 1095, 1679
TasI AATT 8 cut(s) 87, 200, 206, 255, 670, 860, 958, 1278
TauI GCSGC 2 cut(s) 119, 304
TfiI GAWTC 4 cut(s) 318, 664, 1123, 1481
Tru1I TTAA 7 cut(s) 236, 558, 951, 1104, 1185, 1295, 1364
Tru9I TTAA 7 cut(s) 236, 558, 951, 1104, 1185, 1295, 1364
TscAI CASTG 2 cut(s) 520, 921
TseFI GTSAC 1 cut(s) 1534
TseI GCWGC 5 cut(s) 335, 353, 1208, 1274, 1472
Tsp45I GTSAC 1 cut(s) 1534
TspDTI ATGAA 5 cut(s) 183, 589, 669, 962, 1332
TspGWI ACGGA 2 cut(s) 371, 1313
TspRI CASTG 2 cut(s) 520, 921
XapI RAATTY 4 cut(s) 87, 255, 670, 860
XmaJI CCTAGG 1 cut(s) 1517
XspI CTAG 6 cut(s) 371, 897, 1083, 1242, 1263, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.