iq-domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18840 AT1G18840 AT1G18840 AT1G74690 |
| fragaria_vesca | FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 |
| malus_domestica | MD06G1189500.v1.1 MD14G1196500.v1.1 |
| prunus_persica | Prupe.5G188300_v2.0.a1 |
| pyrus_communis | pycom06g16840 pycom14g16320 |
| rosa_chinensis | RchiOBHm_Chr7g0180771 |
| rosa_laevigata | RLG00000005231 |
| rosa_multiflora | Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00226750 Rroxscaffold_3G00272540 |
| rosa_rugosa | Rorug06G0435900 |
| rosa_samantha | Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500 |
| rosa_wichuraiana | Rw7G003100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 298, 387, 1168 |
| AccII | CGCG | 1 cut(s) | 284 |
| AciI | CCGC | 3 cut(s) | 117, 282, 302 |
| AclWI | GGATC | 8 cut(s) | 32, 143, 156, 273, 286, 302, 743, 905 |
| AcsI | RAATTY | 4 cut(s) | 87, 255, 670, 860 |
| AcuI | CTGAAG | 2 cut(s) | 1241, 1290 |
| AfaI | GTAC | 1 cut(s) | 1458 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 530, 714, 735, 1338, 1522 |
| AgsI | TTSAA | 9 cut(s) | 57, 93, 260, 497, 572, 833, 944, 1348, 1631 |
| AhlI | ACTAGT | 2 cut(s) | 1082, 1241 |
| AjnI | CCWGG | 5 cut(s) | 119, 250, 390, 658, 1118 |
| Alw21I | GWGCWC | 2 cut(s) | 39, 1507 |
| Alw26I | GTCTC | 2 cut(s) | 682, 844 |
| AlwI | GGATC | 8 cut(s) | 32, 143, 156, 273, 286, 302, 743, 905 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1478 |
| AoxI | GGCC | 1 cut(s) | 1136 |
| ApeKI | GCWGC | 5 cut(s) | 335, 353, 1208, 1274, 1472 |
| ApoI | RAATTY | 4 cut(s) | 87, 255, 670, 860 |
| AspA2I | CCTAGG | 1 cut(s) | 1517 |
| AspLEI | GCGC | 3 cut(s) | 286, 454, 801 |
| AsuC2I | CCSGG | 1 cut(s) | 773 |
| AsuHPI | GGTGA | 2 cut(s) | 484, 1599 |
| AvrII | CCTAGG | 1 cut(s) | 1517 |
| BaeGI | GKGCMC | 2 cut(s) | 390, 1171 |
| BamHI | GGATCC | 2 cut(s) | 148, 278 |
| BanI | GGYRCC | 3 cut(s) | 298, 387, 1168 |
| BauI | CACGAG | 1 cut(s) | 459 |
| Bbv12I | GWGCWC | 2 cut(s) | 39, 1507 |
| BbvCI | CCTCAGC | 1 cut(s) | 1017 |
| BbvI | GCAGC | 5 cut(s) | 322, 340, 1195, 1261, 1484 |
| BccI | CCATC | 6 cut(s) | 236, 690, 909, 1135, 1679, 1707 |
| BceAI | ACGGC | 1 cut(s) | 1545 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 377, 411 |
| BciT130I | CCWGG | 5 cut(s) | 121, 252, 392, 660, 1120 |
| BcnI | CCSGG | 1 cut(s) | 773 |
| BcoDI | GTCTC | 2 cut(s) | 682, 844 |
| BcuI | ACTAGT | 2 cut(s) | 1082, 1241 |
| BfaI | CTAG | 6 cut(s) | 371, 897, 1083, 1242, 1263, 1518 |
| BfmI | CTRYAG | 1 cut(s) | 1209 |
| BfoI | RGCGCY | 1 cut(s) | 455 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 122 |
| BglII | AGATCT | 1 cut(s) | 1216 |
| BisI | GCNGC | 7 cut(s) | 117, 302, 336, 354, 1209, 1275, 1473 |
| BlnI | CCTAGG | 1 cut(s) | 1517 |
| BlsI | GCNGC | 7 cut(s) | 118, 303, 337, 355, 1210, 1276, 1474 |
| Bme1390I | CCNGG | 6 cut(s) | 121, 252, 392, 660, 773, 1120 |
| BmiI | GGNNCC | 7 cut(s) | 150, 280, 300, 389, 1062, 1170, 1513 |
| BmrFI | CCNGG | 6 cut(s) | 121, 252, 392, 660, 773, 1120 |
| BmsI | GCATC | 3 cut(s) | 510, 624, 1055 |
| BpmI | CTGGAG | 3 cut(s) | 150, 548, 1392 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1017 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| BpuMI | CCSGG | 1 cut(s) | 773 |
| BsaJI | CCNNGG | 7 cut(s) | 120, 382, 659, 734, 1163, 1517, 1610 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 521, 551, 1421, 1451 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 530, 714, 735, 1338, 1522 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 5 cut(s) | 133, 689, 722, 914, 1131 |
| Bse3DI | GCAATG | 1 cut(s) | 1312 |
| BseBI | CCWGG | 5 cut(s) | 121, 252, 392, 660, 1120 |
| BseDI | CCNNGG | 7 cut(s) | 120, 382, 659, 734, 1163, 1517, 1610 |
| BseGI | GGATG | 4 cut(s) | 1127, 1321, 1328, 1718 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 530, 714, 735, 1338, 1522 |
| BseMI | GCAATG | 1 cut(s) | 1312 |
| BseMII | CTCAG | 5 cut(s) | 303, 632, 773, 1008, 1513 |
| BseNI | ACTGG | 5 cut(s) | 133, 689, 722, 914, 1131 |
| BseSI | GKGCMC | 2 cut(s) | 390, 1171 |
| BseXI | GCAGC | 5 cut(s) | 322, 340, 1195, 1261, 1484 |
| BsgI | GTGCAG | 2 cut(s) | 938, 1019 |
| Bsh1236I | CGCG | 1 cut(s) | 284 |
| BshFI | GGCC | 1 cut(s) | 1138 |
| BshNI | GGYRCC | 3 cut(s) | 298, 387, 1168 |
| BsiHKAI | GWGCWC | 2 cut(s) | 39, 1507 |
| BsiSI | CCGG | 3 cut(s) | 14, 773, 808 |
| BslFI | GGGAC | 1 cut(s) | 963 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 530, 714, 735, 1338, 1522 |
| BsmAI | GTCTC | 2 cut(s) | 682, 844 |
| BsmFI | GGGAC | 1 cut(s) | 963 |
| BsmI | GAATGC | 1 cut(s) | 66 |
| BsnI | GGCC | 1 cut(s) | 1138 |
| Bsp1286I | GDGCHC | 4 cut(s) | 39, 390, 1171, 1507 |
| Bsp143I | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| Bsp19I | CCATGG | 1 cut(s) | 1163 |
| BspACI | CCGC | 3 cut(s) | 117, 282, 302 |
| BspANI | GGCC | 1 cut(s) | 1138 |
| BspCNI | CTCAG | 5 cut(s) | 304, 633, 772, 1009, 1512 |
| BspFNI | CGCG | 1 cut(s) | 284 |
| BspLI | GGNNCC | 7 cut(s) | 150, 280, 300, 389, 1062, 1170, 1513 |
| BspMAI | CTGCAG | 1 cut(s) | 1213 |
| BspPI | GGATC | 8 cut(s) | 32, 143, 156, 273, 286, 302, 743, 905 |
| BspT107I | GGYRCC | 3 cut(s) | 298, 387, 1168 |
| BsrDI | GCAATG | 1 cut(s) | 1312 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrI | ACTGG | 5 cut(s) | 133, 689, 722, 914, 1131 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 7 cut(s) | 120, 382, 659, 734, 1163, 1517, 1610 |
| BssMI | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| BssSI | CACGAG | 1 cut(s) | 459 |
| BssT1I | CCWWGG | 4 cut(s) | 734, 1163, 1517, 1610 |
| Bst2BI | CACGAG | 1 cut(s) | 459 |
| Bst2UI | CCWGG | 5 cut(s) | 121, 252, 392, 660, 1120 |
| Bst4CI | ACNGT | 3 cut(s) | 34, 631, 1456 |
| Bst6I | CTCTTC | 1 cut(s) | 73 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 353, 1586 |
| BstC8I | GCNNGC | 7 cut(s) | 15, 64, 333, 405, 456, 849, 1002 |
| BstDEI | CTNAG | 6 cut(s) | 312, 641, 759, 884, 1017, 1499 |
| BstDSI | CCRYGG | 2 cut(s) | 382, 1163 |
| BstEII | GGTNACC | 1 cut(s) | 1699 |
| BstF5I | GGATG | 4 cut(s) | 1127, 1321, 1328, 1718 |
| BstFNI | CGCG | 1 cut(s) | 284 |
| BstH2I | RGCGCY | 1 cut(s) | 455 |
| BstHHI | GCGC | 3 cut(s) | 286, 454, 801 |
| BstKTI | GATC | 7 cut(s) | 27, 151, 281, 310, 751, 913, 1219 |
| BstMAI | GTCTC | 2 cut(s) | 682, 844 |
| BstMBI | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 122, 131, 344, 353, 499, 1274, 1586 |
| BstNI | CCWGG | 5 cut(s) | 121, 252, 392, 660, 1120 |
| BstPI | GGTNACC | 1 cut(s) | 1699 |
| BstSCI | CCNGG | 6 cut(s) | 119, 250, 390, 658, 771, 1118 |
| BstSFI | CTRYAG | 1 cut(s) | 1209 |
| BstSLI | GKGCMC | 2 cut(s) | 390, 1171 |
| BstUI | CGCG | 1 cut(s) | 284 |
| BstV1I | GCAGC | 5 cut(s) | 322, 340, 1195, 1261, 1484 |
| BstX2I | RGATCY | 5 cut(s) | 148, 278, 748, 910, 1216 |
| BstYI | RGATCY | 5 cut(s) | 148, 278, 748, 910, 1216 |
| BsuRI | GGCC | 1 cut(s) | 1138 |
| BtgI | CCRYGG | 2 cut(s) | 382, 1163 |
| BtgZI | GCGATG | 1 cut(s) | 1698 |
| BtsCI | GGATG | 4 cut(s) | 1127, 1321, 1328, 1718 |
| BtsI | GCAGTG | 1 cut(s) | 520 |
| BtsIMutI | CAGTG | 2 cut(s) | 520, 921 |
| Cac8I | GCNNGC | 7 cut(s) | 15, 64, 333, 405, 456, 849, 1002 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1478 |
| CfoI | GCGC | 3 cut(s) | 286, 454, 801 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| CsiI | ACCWGGT | 1 cut(s) | 390 |
| Csp6I | GTAC | 1 cut(s) | 1457 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 276, 311 |
| CviAII | CATG | 3 cut(s) | 167, 290, 1164 |
| CviQI | GTAC | 1 cut(s) | 1457 |
| DdeI | CTNAG | 6 cut(s) | 312, 641, 759, 884, 1017, 1499 |
| DpnI | GATC | 7 cut(s) | 26, 150, 280, 309, 750, 912, 1218 |
| DpnII | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| Eam1104I | CTCTTC | 1 cut(s) | 73 |
| EarI | CTCTTC | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 4 cut(s) | 734, 1163, 1517, 1610 |
| Eco57I | CTGAAG | 2 cut(s) | 1241, 1290 |
| Eco91I | GGTNACC | 1 cut(s) | 1699 |
| EcoO65I | GGTNACC | 1 cut(s) | 1699 |
| EcoRI | GAATTC | 1 cut(s) | 255 |
| EcoRII | CCWGG | 5 cut(s) | 119, 250, 390, 658, 1118 |
| EcoT14I | CCWWGG | 4 cut(s) | 734, 1163, 1517, 1610 |
| ErhI | CCWWGG | 4 cut(s) | 734, 1163, 1517, 1610 |
| FaeI | CATG | 3 cut(s) | 170, 293, 1167 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 924, 956 |
| FaqI | GGGAC | 1 cut(s) | 963 |
| FatI | CATG | 3 cut(s) | 166, 289, 1163 |
| FauNDI | CATATG | 1 cut(s) | 509 |
| Fnu4HI | GCNGC | 7 cut(s) | 117, 302, 336, 354, 1209, 1275, 1473 |
| FokI | GGATG | 3 cut(s) | 1114, 1315, 1328 |
| Fsp4HI | GCNGC | 7 cut(s) | 117, 302, 336, 354, 1209, 1275, 1473 |
| FspBI | CTAG | 6 cut(s) | 371, 897, 1083, 1242, 1263, 1518 |
| GlaI | GCGC | 3 cut(s) | 285, 453, 800 |
| GluI | GCNGC | 7 cut(s) | 117, 302, 336, 354, 1209, 1275, 1473 |
| GsuI | CTGGAG | 3 cut(s) | 150, 548, 1392 |
| HaeII | RGCGCY | 1 cut(s) | 455 |
| HaeIII | GGCC | 1 cut(s) | 1138 |
| HapII | CCGG | 3 cut(s) | 14, 773, 808 |
| HhaI | GCGC | 3 cut(s) | 286, 454, 801 |
| Hin1II | CATG | 3 cut(s) | 170, 293, 1167 |
| Hin6I | GCGC | 3 cut(s) | 284, 452, 799 |
| HinP1I | GCGC | 3 cut(s) | 284, 452, 799 |
| HindIII | AAGCTT | 1 cut(s) | 608 |
| HinfI | GANTC | 6 cut(s) | 318, 544, 664, 1123, 1283, 1481 |
| HpaII | CCGG | 3 cut(s) | 14, 773, 808 |
| HphI | GGTGA | 2 cut(s) | 484, 1599 |
| Hpy188I | TCNGA | 9 cut(s) | 148, 399, 484, 642, 762, 859, 1221, 1429, 1502 |
| Hpy188III | TCNNGA | 6 cut(s) | 311, 527, 746, 1064, 1096, 1313 |
| Hpy99I | CGWCG | 1 cut(s) | 1623 |
| HpyAV | CCTTC | 3 cut(s) | 961, 1070, 1713 |
| HpyCH4III | ACNGT | 3 cut(s) | 34, 631, 1456 |
| HpyCH4IV | ACGT | 1 cut(s) | 563 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 122, 131, 344, 353, 499, 1274, 1586 |
| HpyF3I | CTNAG | 6 cut(s) | 312, 641, 759, 884, 1017, 1499 |
| HpySE526I | ACGT | 1 cut(s) | 563 |
| Hsp92II | CATG | 3 cut(s) | 170, 293, 1167 |
| HspAI | GCGC | 3 cut(s) | 284, 452, 799 |
| KroI | GCCGGC | 1 cut(s) | 13 |
| KroNI | GCCGGC | 1 cut(s) | 15 |
| Kzo9I | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| LmnI | GCTCC | 2 cut(s) | 131, 1517 |
| Lsp1109I | GCAGC | 5 cut(s) | 322, 340, 1195, 1261, 1484 |
| LweI | GCATC | 3 cut(s) | 510, 624, 1055 |
| MabI | ACCWGGT | 1 cut(s) | 390 |
| MaeI | CTAG | 6 cut(s) | 371, 897, 1083, 1242, 1263, 1518 |
| MaeII | ACGT | 1 cut(s) | 563 |
| MaeIII | GTNAC | 4 cut(s) | 878, 1085, 1534, 1699 |
| MalI | GATC | 7 cut(s) | 26, 150, 280, 309, 750, 912, 1218 |
| MboI | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| MboII | GAAGA | 7 cut(s) | 45, 90, 135, 810, 1226, 1370, 1392 |
| MfeI | CAATTG | 1 cut(s) | 1278 |
| MflI | RGATCY | 5 cut(s) | 148, 278, 748, 910, 1216 |
| MhlI | GDGCHC | 4 cut(s) | 39, 390, 1171, 1507 |
| MluCI | AATT | 8 cut(s) | 87, 200, 206, 255, 670, 860, 958, 1278 |
| MlyI | GAGTC | 2 cut(s) | 553, 1292 |
| MmeI | TCCRAC | 3 cut(s) | 532, 669, 1475 |
| MroNI | GCCGGC | 1 cut(s) | 13 |
| MseI | TTAA | 7 cut(s) | 236, 558, 951, 1104, 1185, 1295, 1364 |
| MspI | CCGG | 3 cut(s) | 14, 773, 808 |
| MspR9I | CCNGG | 6 cut(s) | 121, 252, 392, 660, 773, 1120 |
| MunI | CAATTG | 1 cut(s) | 1278 |
| Mva1269I | GAATGC | 1 cut(s) | 66 |
| MvaI | CCWGG | 5 cut(s) | 121, 252, 392, 660, 1120 |
| MvnI | CGCG | 1 cut(s) | 284 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 122, 131, 344, 353, 499, 1274, 1586 |
| NaeI | GCCGGC | 1 cut(s) | 15 |
| NciI | CCSGG | 1 cut(s) | 773 |
| NcoI | CCATGG | 1 cut(s) | 1163 |
| NdeI | CATATG | 1 cut(s) | 509 |
| NdeII | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| NgoMIV | GCCGGC | 1 cut(s) | 13 |
| NlaIII | CATG | 3 cut(s) | 170, 293, 1167 |
| NlaIV | GGNNCC | 7 cut(s) | 150, 280, 300, 389, 1062, 1170, 1513 |
| NmuCI | GTSAC | 1 cut(s) | 1534 |
| PctI | GAATGC | 1 cut(s) | 66 |
| PdiI | GCCGGC | 1 cut(s) | 15 |
| PfeI | GAWTC | 4 cut(s) | 318, 664, 1123, 1481 |
| PfoI | TCCNGGA | 1 cut(s) | 250 |
| PkrI | GCNGC | 7 cut(s) | 118, 303, 337, 355, 1210, 1276, 1474 |
| PleI | GAGTC | 2 cut(s) | 552, 1291 |
| PpsI | GAGTC | 2 cut(s) | 552, 1291 |
| Psp6I | CCWGG | 5 cut(s) | 119, 250, 390, 658, 1118 |
| PspEI | GGTNACC | 1 cut(s) | 1699 |
| PspGI | CCWGG | 5 cut(s) | 119, 250, 390, 658, 1118 |
| PspN4I | GGNNCC | 7 cut(s) | 150, 280, 300, 389, 1062, 1170, 1513 |
| PstI | CTGCAG | 1 cut(s) | 1213 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1478 |
| PsuI | RGATCY | 5 cut(s) | 148, 278, 748, 910, 1216 |
| RsaI | GTAC | 1 cut(s) | 1458 |
| RsaNI | GTAC | 1 cut(s) | 1457 |
| SaqAI | TTAA | 7 cut(s) | 236, 558, 951, 1104, 1185, 1295, 1364 |
| SatI | GCNGC | 7 cut(s) | 117, 302, 336, 354, 1209, 1275, 1473 |
| Sau3AI | GATC | 7 cut(s) | 24, 148, 278, 307, 748, 910, 1216 |
| SchI | GAGTC | 2 cut(s) | 553, 1292 |
| ScrFI | CCNGG | 6 cut(s) | 121, 252, 392, 660, 773, 1120 |
| SduI | GDGCHC | 4 cut(s) | 39, 390, 1171, 1507 |
| SexAI | ACCWGGT | 1 cut(s) | 390 |
| SfaNI | GCATC | 3 cut(s) | 510, 624, 1055 |
| SfcI | CTRYAG | 1 cut(s) | 1209 |
| SmlI | CTYRAG | 1 cut(s) | 605 |
| SmoI | CTYRAG | 1 cut(s) | 605 |
| SpeI | ACTAGT | 2 cut(s) | 1082, 1241 |
| Sse9I | AATT | 8 cut(s) | 87, 200, 206, 255, 670, 860, 958, 1278 |
| SsiI | CCGC | 3 cut(s) | 117, 282, 302 |
| SspMI | CTAG | 6 cut(s) | 371, 897, 1083, 1242, 1263, 1518 |
| StyD4I | CCNGG | 6 cut(s) | 119, 250, 390, 658, 771, 1118 |
| StyI | CCWWGG | 4 cut(s) | 734, 1163, 1517, 1610 |
| TaaI | ACNGT | 3 cut(s) | 34, 631, 1456 |
| TaiI | ACGT | 1 cut(s) | 566 |
| TaqI | TCGA | 3 cut(s) | 1074, 1095, 1679 |
| TasI | AATT | 8 cut(s) | 87, 200, 206, 255, 670, 860, 958, 1278 |
| TauI | GCSGC | 2 cut(s) | 119, 304 |
| TfiI | GAWTC | 4 cut(s) | 318, 664, 1123, 1481 |
| Tru1I | TTAA | 7 cut(s) | 236, 558, 951, 1104, 1185, 1295, 1364 |
| Tru9I | TTAA | 7 cut(s) | 236, 558, 951, 1104, 1185, 1295, 1364 |
| TscAI | CASTG | 2 cut(s) | 520, 921 |
| TseFI | GTSAC | 1 cut(s) | 1534 |
| TseI | GCWGC | 5 cut(s) | 335, 353, 1208, 1274, 1472 |
| Tsp45I | GTSAC | 1 cut(s) | 1534 |
| TspDTI | ATGAA | 5 cut(s) | 183, 589, 669, 962, 1332 |
| TspGWI | ACGGA | 2 cut(s) | 371, 1313 |
| TspRI | CASTG | 2 cut(s) | 520, 921 |
| XapI | RAATTY | 4 cut(s) | 87, 255, 670, 860 |
| XmaJI | CCTAGG | 1 cut(s) | 1517 |
| XspI | CTAG | 6 cut(s) | 371, 897, 1083, 1242, 1263, 1518 |