Rh7CG039000

iq-domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
2619542 .. 2624134
4593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG039000.1

Sequence Viewer

Length: 1920 bp
ATGCACAGAGGTGATACTCCACAACCGAGTTCAGTTTCAATAAACAAAGATTCTCACAACACACATGTTGTCTTTGTTCTTAGATCACATTCTTGGCTTGGCTCACTCTCACTGAACTCATGGGAAAGGGAAAGTTGGTTTAGGGATTTGGAAGGTTGTTCTACTTGTACATTTGAAAACGGGCTTCAGGATTGTAAGTCATCCAAACCTAATTTATCAAAAGGAAGAGAGAGAATTTCAAATGAGAAAGAGGTGGTGGTTGCTGCCAGGGCAGCTGCAACTGAATTTGTTGCAGATCCACCTGCAGCTTTTCATGAAAGCACAAACACCACAGATTATAACAAAGGTTTAGAATTGGAAAACAAGGAAGCTCCAAGTGTATTAGGTAATGGAGAGCCAGGAAGCCAAAGTACAGATTCACAAGGCTCTACACCACAAAATGCAGCGTATGATCCTGAAAAAATCAGACAAGAGCAAGCTGCAACAAAGGCACAGGCTGCCTTTAGGGGTTATCTGGCTCGCCGCGCCTTTTGGGCCCTCAAAGGCATAATAAGGCTACAGGCACTTATCCGTGGGCACTTGGTGAGGAGACAAGCTGTTGCTACACTTTGCAGTATGTTGGGCATTGTCAAGCTACAGGCACTTAGTCGTGGACGACAAGTCAGGCAGTCTATTATTGGGCTTGAAGTGCAAAAAAGATGCCATGTTACGCCTCTGGAGGGCAAGCTAGTGGATCCTGTTGGACTTAATATCTCTACTCAAATGGCAAAGCTGACGGTTAATGTTTTTATTAGTAAGCTTCTTGCTTTCTCACCTACTGTGATGCCTCTGCGTTTACATTATGAACCTGGAGATCCAAATTCAGTCCCAAACTGGTTAGAACGTTGGTCAGCAACACATTTTTGGAAACCACTTCCCCAACCAAGAAAAGTTCCAGATTCAAAATCTCAGAGAACACATCGGGATCCTCAAACAGGCAGGGTAAAGCGAAGCACCCGGAGGCTTCCGGCTGCAAATGTTGAAAGTGTCTCGGTGCAAGTCACCTCTGAATCTGAGAAACCCAAACGTATCCTTAGGAAAGTTTCCAGCCAGCCAGCAGATCCAGTGCAGGAAAATCCACAAATTGAGCTTGAAAAGGTTAAACGTAACTTGAGGAAGGTTCATACTCCCATAGTAGAGAACTCTGTGCAGACGGAAATTGAAGCTCAGAATCTCACACAGAATCTGGAAAAGGCATCAAGTGTTTCGGGTCATAATGTTTTTGAAGGGATCACAAATAATTCTGTTGAGAAGATGAAGAATGAGCCAATTGTTGCTCTGTCCAATCTGCCTGATGCAGAAATAACTCCTGAACCATCAGCAGCAAAAGAGGTCTTTAACTTATTATCCGATGATCAGGTTGCAATGGATTTGAAGCCTTTGACAGAGGGCACTGGTAAAGAAATAAATACACCTAGTGATGAAGCTGCAGTTGAGTCAAACATATTAACAGAGAGCAGTAAAAAAGATGAAAACATCCCTGTTCCAAATGTGGTTTTGAGCCAAAAGGAAGATTTAACAAGCAATGACAACCAGAAATCAAGCAGGAAAACTTCAACTCCAGCCAAACAAGAACGTTCAGAGAATGGGTTGCAAAACAGTCCAACATTGCCAAGCTATATGGCAGCAACTGAGTCTGCAAAGGCAAAGCTGAGGGCACAAGGATCTCCTAGGCTTGGACTGGAGGCTACTGAAAAGACTGAGAAAACTAACTCCACTCGCCGTCATTCTCTGCCATCATCAGCTAATGGCAAAATCACTTCACAGTCTCCAAGGACACAGAAACTTGTTCAATCAGGTGGAAAAGGAGGAATCAAAAGTGACAAATCTCTGTCAGCCTCAAGAGACGGGAAGGCAAGCCAAGCAGAGTGGAGAAGATGA

Protein Analysis

639

Amino Acids

70.29

Weight (kDa)

9.48

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 523 - 620 1.8e-15 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AarI CACCTGC 1 cut(s) 310
Acc36I ACCTGC 1 cut(s) 310
AccII CGCG 1 cut(s) 525
AciI CCGC 1 cut(s) 523
AclI AACGTT 2 cut(s) 883, 1615
AcsI RAATTY 3 cut(s) 234, 284, 859
AcuI CTGAAG 1 cut(s) 170
AdeI CACNNNGTG 2 cut(s) 583, 1457
AfaI GTAC 2 cut(s) 169, 412
AfiI CCNNNNNNNGG 3 cut(s) 719, 974, 1715
AflIII ACRYGT 1 cut(s) 64
AhdI GACNNNNNGTC 1 cut(s) 659
AjnI CCWGG 3 cut(s) 266, 397, 847
AleI CACNNNNGTG 1 cut(s) 9
Alw26I GTCTC 4 cut(s) 583, 1033, 1812, 1878
AlwNI CAGNNNCTG 2 cut(s) 1225, 1670
AoxI GGCC 1 cut(s) 534
ApaI GGGCCC 1 cut(s) 538
ApoI RAATTY 3 cut(s) 234, 284, 859
AspA2I CCTAGG 1 cut(s) 1709
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 2 cut(s) 534, 535
AsuC2I CCSGG 1 cut(s) 997
AsuHPI GGTGA 4 cut(s) 23, 595, 804, 1033
AvrII CCTAGG 1 cut(s) 1709
AxyI CCTNAGG 1 cut(s) 1073
BaeGI GKGCMC 4 cut(s) 538, 579, 1433, 1699
BamHI GGATCC 2 cut(s) 733, 964
BanII GRGCYC 1 cut(s) 538
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
BbvCI CCTCAGC 1 cut(s) 1691
BccI CCATC 2 cut(s) 1363, 1783
BceAI ACGGC 1 cut(s) 1746
BciT130I CCWGG 3 cut(s) 268, 399, 849
BciVI GTATCC 1 cut(s) 1079
BclI TGATCA 1 cut(s) 1393
BcnI CCSGG 1 cut(s) 997
BcoDI GTCTC 4 cut(s) 583, 1033, 1812, 1878
BfaI CTAG 3 cut(s) 728, 1455, 1710
BfmI CTRYAG 4 cut(s) 303, 557, 635, 1467
BfuAI ACCTGC 1 cut(s) 310
BfuI GTATCC 1 cut(s) 1079
BglI GCCNNNNNGGC 1 cut(s) 533
BlnI CCTAGG 1 cut(s) 1709
Bme1390I CCNGG 4 cut(s) 268, 399, 849, 997
BmeRI GACNNNNNGTC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 534, 535
BmiI GGNNCC 3 cut(s) 536, 735, 966
BmrFI CCNGG 4 cut(s) 268, 399, 849, 997
BmsI GCATC 4 cut(s) 689, 813, 1244, 1324
BpmI CTGGAG 4 cut(s) 737, 870, 1584, 1742
Bpu10I CCTNAGC 1 cut(s) 1691
BpuEI CTTGAG 2 cut(s) 1171, 1864
BpuMI CCSGG 1 cut(s) 997
BsaJI CCNNGG 4 cut(s) 267, 571, 1709, 1811
BsaXI ACNNNNNCTCC 2 cut(s) 1582, 1612
Bsc4I CCNNNNNNNGG 3 cut(s) 719, 974, 1715
Bse1I ACTGG 4 cut(s) 878, 1103, 1438, 1725
Bse21I CCTNAGG 1 cut(s) 1073
Bse3DI GCAATG 3 cut(s) 1410, 1570, 1646
BseBI CCWGG 3 cut(s) 268, 399, 849
BseDI CCNNGG 4 cut(s) 267, 571, 1709, 1811
BseGI GGATG 2 cut(s) 200, 1515
BseLI CCNNNNNNNGG 3 cut(s) 719, 974, 1715
BseMI GCAATG 3 cut(s) 1410, 1570, 1646
BseMII CTCAG 6 cut(s) 962, 1044, 1220, 1662, 1682, 1731
BseNI ACTGG 4 cut(s) 878, 1103, 1438, 1725
BseRI GAGGAG 1 cut(s) 601
BseSI GKGCMC 4 cut(s) 538, 579, 1433, 1699
BsgI GTGCAG 2 cut(s) 1127, 1208
Bsh1236I CGCG 1 cut(s) 525
BshFI GGCC 1 cut(s) 536
BsiSI CCGG 2 cut(s) 997, 1007
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 3 cut(s) 719, 974, 1715
BsmAI GTCTC 4 cut(s) 583, 1033, 1812, 1878
BsmBI CGTCTC 1 cut(s) 1878
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 1 cut(s) 536
Bsp120I GGGCCC 1 cut(s) 534
Bsp1286I GDGCHC 4 cut(s) 538, 579, 1433, 1699
Bsp1407I TGTACA 1 cut(s) 167
BspACI CCGC 1 cut(s) 523
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 6 cut(s) 961, 1045, 1219, 1663, 1683, 1732
BspFNI CGCG 1 cut(s) 525
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 3 cut(s) 536, 735, 966
BspMAI CTGCAG 2 cut(s) 307, 1471
BspMI ACCTGC 1 cut(s) 310
BsrDI GCAATG 3 cut(s) 1410, 1570, 1646
BsrGI TGTACA 1 cut(s) 167
BsrI ACTGG 4 cut(s) 878, 1103, 1438, 1725
BssECI CCNNGG 4 cut(s) 267, 571, 1709, 1811
BssT1I CCWWGG 2 cut(s) 1709, 1811
Bst2UI CCWGG 3 cut(s) 268, 399, 849
Bst4CI ACNGT 4 cut(s) 778, 820, 1640, 1806
Bst6I CTCTTC 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 167
BstC8I GCNNGC 6 cut(s) 477, 520, 725, 1091, 1095, 1897
BstDEI CTNAG 9 cut(s) 80, 644, 948, 1053, 1073, 1206, 1671, 1691, 1740
BstDSI CCRYGG 1 cut(s) 571
BstENI CCTNNNNNAGG 1 cut(s) 972
BstF5I GGATG 2 cut(s) 200, 1515
BstFNI CGCG 1 cut(s) 525
BstHHI GCGC 1 cut(s) 527
BstMAI GTCTC 4 cut(s) 583, 1033, 1812, 1878
BstMWI GCNNNNNNNGC 8 cut(s) 269, 272, 488, 497, 524, 533, 688, 1901
BstNI CCWGG 3 cut(s) 268, 399, 849
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 4 cut(s) 266, 397, 847, 995
BstSFI CTRYAG 4 cut(s) 303, 557, 635, 1467
BstSLI GKGCMC 4 cut(s) 538, 579, 1433, 1699
BstUI CGCG 1 cut(s) 525
BstX2I RGATCY 6 cut(s) 295, 733, 853, 964, 1099, 1703
BstYI RGATCY 6 cut(s) 295, 733, 853, 964, 1099, 1703
Bsu36I CCTNAGG 1 cut(s) 1073
BsuI GTATCC 1 cut(s) 1079
BsuRI GGCC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 571
BtsCI GGATG 2 cut(s) 200, 1515
BtsIMutI CAGTG 3 cut(s) 110, 1110, 1431
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 6 cut(s) 477, 520, 725, 1091, 1095, 1897
CaiI CAGNNNCTG 2 cut(s) 1225, 1670
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 527
Cfr13I GGNCC 2 cut(s) 534, 535
Csp6I GTAC 2 cut(s) 168, 411
CspCI CAANNNNNGTGG 1 cut(s) 1889
CviAII CATG 4 cut(s) 65, 120, 314, 704
CviQI GTAC 2 cut(s) 168, 411
DdeI CTNAG 9 cut(s) 80, 644, 948, 1053, 1073, 1206, 1671, 1691, 1740
DraIII CACNNNGTG 2 cut(s) 583, 1457
DriI GACNNNNNGTC 1 cut(s) 659
Eam1104I CTCTTC 1 cut(s) 220
Eam1105I GACNNNNNGTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 1709, 1811
Eco24I GRGCYC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 1073
EcoNI CCTNNNNNAGG 1 cut(s) 972
EcoO109I RGGNCCY 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 266, 397, 847
EcoT14I CCWWGG 2 cut(s) 1709, 1811
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 2 cut(s) 1709, 1811
Esp3I CGTCTC 1 cut(s) 1878
FaeI CATG 4 cut(s) 68, 123, 317, 707
FaqI GGGAC 1 cut(s) 851
FatI CATG 4 cut(s) 64, 119, 313, 703
FbaI TGATCA 1 cut(s) 1393
FokI GGATG 2 cut(s) 187, 1502
FriOI GRGCYC 1 cut(s) 538
FspBI CTAG 3 cut(s) 728, 1455, 1710
GlaI GCGC 1 cut(s) 526
GsuI CTGGAG 4 cut(s) 737, 870, 1584, 1742
HaeIII GGCC 1 cut(s) 536
HapII CCGG 2 cut(s) 997, 1007
HhaI GCGC 1 cut(s) 527
Hin1II CATG 4 cut(s) 68, 123, 317, 707
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 9 cut(s) 50, 416, 938, 1049, 1210, 1222, 1475, 1673, 1851
HpaII CCGG 2 cut(s) 997, 1007
HphI GGTGA 4 cut(s) 23, 595, 804, 1033
Hpy166II GTNNAC 2 cut(s) 653, 836
Hpy188I TCNGA 7 cut(s) 467, 951, 1048, 1054, 1209, 1390, 1621
Hpy188III TCNNGA 9 cut(s) 188, 314, 455, 716, 935, 962, 1226, 1349, 1881
Hpy8I GTNNAC 2 cut(s) 653, 836
HpyAV CCTTC 4 cut(s) 146, 1150, 1259, 1885
HpyCH4III ACNGT 4 cut(s) 778, 820, 1640, 1806
HpyCH4IV ACGT 4 cut(s) 883, 1066, 1144, 1615
HpyF10VI GCNNNNNNNGC 8 cut(s) 269, 272, 488, 497, 524, 533, 688, 1901
HpyF3I CTNAG 9 cut(s) 80, 644, 948, 1053, 1073, 1206, 1671, 1691, 1740
HpySE526I ACGT 4 cut(s) 883, 1066, 1144, 1615
Hsp92II CATG 4 cut(s) 68, 123, 317, 707
HspAI GCGC 1 cut(s) 525
Ksp22I TGATCA 1 cut(s) 1393
LmnI GCTCC 1 cut(s) 376
LweI GCATC 4 cut(s) 689, 813, 1244, 1324
MaeI CTAG 3 cut(s) 728, 1455, 1710
MaeII ACGT 4 cut(s) 883, 1066, 1144, 1615
MaeIII GTNAC 4 cut(s) 706, 1039, 1145, 1859
MboII GAAGA 4 cut(s) 237, 1303, 1309, 1562
MfeI CAATTG 1 cut(s) 1308
MflI RGATCY 6 cut(s) 295, 733, 853, 964, 1099, 1703
MhlI GDGCHC 4 cut(s) 538, 579, 1433, 1699
MluCI AATT 9 cut(s) 211, 234, 284, 353, 859, 1122, 1197, 1279, 1308
MlyI GAGTC 2 cut(s) 1484, 1682
MmeI TCCRAC 2 cut(s) 721, 1667
MseI TTAA 6 cut(s) 747, 780, 1140, 1377, 1487, 1556
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 2 cut(s) 997, 1007
MspR9I CCNGG 4 cut(s) 268, 399, 849, 997
MunI CAATTG 1 cut(s) 1308
MvaI CCWGG 3 cut(s) 268, 399, 849
MvnI CGCG 1 cut(s) 525
MwoI GCNNNNNNNGC 8 cut(s) 269, 272, 488, 497, 524, 533, 688, 1901
NciI CCSGG 1 cut(s) 997
NlaIII CATG 4 cut(s) 68, 123, 317, 707
NlaIV GGNNCC 3 cut(s) 536, 735, 966
NmuCI GTSAC 2 cut(s) 1039, 1859
NspI RCATGY 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 9
PagI TCATGA 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 310
PciI ACATGT 1 cut(s) 64
PfeI GAWTC 7 cut(s) 50, 416, 938, 1049, 1210, 1222, 1851
PleI GAGTC 2 cut(s) 1483, 1681
PpsI GAGTC 2 cut(s) 1483, 1681
PscI ACATGT 1 cut(s) 64
PsiI TTATAA 1 cut(s) 339
Psp1406I AACGTT 2 cut(s) 883, 1615
Psp6I CCWGG 3 cut(s) 266, 397, 847
PspGI CCWGG 3 cut(s) 266, 397, 847
PspN4I GGNNCC 3 cut(s) 536, 735, 966
PspOMI GGGCCC 1 cut(s) 534
PspPI GGNCC 2 cut(s) 534, 535
PstI CTGCAG 2 cut(s) 307, 1471
PstNI CAGNNNCTG 2 cut(s) 1225, 1670
PsuI RGATCY 6 cut(s) 295, 733, 853, 964, 1099, 1703
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 169, 412
RsaNI GTAC 2 cut(s) 168, 411
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 6 cut(s) 747, 780, 1140, 1377, 1487, 1556
Sau96I GGNCC 2 cut(s) 534, 535
SchI GAGTC 2 cut(s) 1484, 1682
ScrFI CCNGG 4 cut(s) 268, 399, 849, 997
SduI GDGCHC 4 cut(s) 538, 579, 1433, 1699
SfaNI GCATC 4 cut(s) 689, 813, 1244, 1324
SfcI CTRYAG 4 cut(s) 303, 557, 635, 1467
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 2 cut(s) 1150, 1879
SmoI CTYRAG 2 cut(s) 1150, 1879
Sse9I AATT 9 cut(s) 211, 234, 284, 353, 859, 1122, 1197, 1279, 1308
SsiI CCGC 1 cut(s) 523
SspMI CTAG 3 cut(s) 728, 1455, 1710
StyD4I CCNGG 4 cut(s) 266, 397, 847, 995
StyI CCWWGG 2 cut(s) 1709, 1811
TaaI ACNGT 4 cut(s) 778, 820, 1640, 1806
TaiI ACGT 4 cut(s) 886, 1069, 1147, 1618
TasI AATT 9 cut(s) 211, 234, 284, 353, 859, 1122, 1197, 1279, 1308
TatI WGTACW 2 cut(s) 167, 410
TauI GCSGC 1 cut(s) 525
TfiI GAWTC 7 cut(s) 50, 416, 938, 1049, 1210, 1222, 1851
Tru1I TTAA 6 cut(s) 747, 780, 1140, 1377, 1487, 1556
Tru9I TTAA 6 cut(s) 747, 780, 1140, 1377, 1487, 1556
TscAI CASTG 3 cut(s) 117, 1110, 1438
TseFI GTSAC 2 cut(s) 1039, 1859
Tsp45I GTSAC 2 cut(s) 1039, 1859
TspDTI ATGAA 7 cut(s) 302, 330, 858, 1151, 1310, 1476, 1524
TspGWI ACGGA 2 cut(s) 560, 1208
TspRI CASTG 3 cut(s) 117, 1110, 1438
XagI CCTNNNNNAGG 1 cut(s) 972
XapI RAATTY 3 cut(s) 234, 284, 859
XceI RCATGY 1 cut(s) 68
XmaJI CCTAGG 1 cut(s) 1709
XspI CTAG 3 cut(s) 728, 1455, 1710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.