Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8418241.1

Orthogroup ID

OG0005039

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 650

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8418241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggaactctgcagaaaacgggcttcaggattgtgtgttattagccttcctgcaatgggcaaatcaccggctaaatggatcaagactgttctgtttgggaagaagccatccaaacctaatatatcaaaaggaagagagagaatttcaaatgagaaagaggtggtggttgctgccagggcagctgcaactgaatttgttgcagatccacctgcagcttttcatgaaagcacaaacaccacagcttataacaaagggttagaattggaaaacgaggaagctccaagtgtattaggtaatggagagccaggaagccaaagtacagattcacaaggctctacaccacaaaatgcagcgtatgatcctgacaaaatcagacaagagcaagctgcaacaaaggcacaggctgcctttaggggttatctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

141

Amino Acids

15.08

Weight (kDa)

8.91

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18840 AT1G18840 AT1G18840 AT1G74690
fragaria_vesca	FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290
malus_domestica	MD06G1189500.v1.1 MD14G1196500.v1.1
prunus_persica	Prupe.5G188300_v2.0.a1
pyrus_communis	pycom06g16840 pycom14g16320
rosa_chinensis	RchiOBHm_Chr7g0180771
rosa_laevigata	RLG00000005231
rosa_multiflora	Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226750 Rroxscaffold_3G00272540
rosa_rugosa	Rorug06G0435900
rosa_samantha	Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500
rosa_wichuraiana	Rw7G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AclWI	GGATC	3 cut(s)	86, 197, 353
AcsI	RAATTY	2 cut(s)	141, 191
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	173, 304
AluBI	AGCT	5 cut(s)	182, 215, 242, 278, 386
AluI	AGCT	5 cut(s)	182, 215, 242, 278, 386
AlwI	GGATC	3 cut(s)	86, 197, 353
ApeKI	GCWGC	7 cut(s)	170, 179, 182, 212, 350, 386, 404
ApoI	RAATTY	2 cut(s)	141, 191
AsuHPI	GGTGA	1 cut(s)	57
BarI	GAAGNNNNNNTAC	2 cut(s)	301, 333
BbvI	GCAGC	7 cut(s)	157, 169, 191, 224, 362, 373, 391
BccI	CCATC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	175, 306
BfmI	CTRYAG	2 cut(s)	10, 210
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	7 cut(s)	171, 180, 183, 213, 351, 387, 405
BlsI	GCNGC	7 cut(s)	172, 181, 184, 214, 352, 388, 406
Bme1390I	CCNGG	2 cut(s)	175, 306
BmrFI	CCNGG	2 cut(s)	175, 306
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	175, 306
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	60
BseXI	GCAGC	7 cut(s)	157, 169, 191, 224, 362, 373, 391
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	78, 202, 358
BspHI	TCATGA	1 cut(s)	220
BspMAI	CTGCAG	2 cut(s)	14, 214
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	3 cut(s)	86, 197, 353
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	3 cut(s)	78, 202, 358
Bst2UI	CCWGG	2 cut(s)	175, 306
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	81, 205, 361
BstMBI	GATC	3 cut(s)	78, 202, 358
BstMWI	GCNNNNNNNGC	4 cut(s)	176, 179, 395, 404
BstNI	CCWGG	2 cut(s)	175, 306
BstSCI	CCNGG	2 cut(s)	173, 304
BstSFI	CTRYAG	2 cut(s)	10, 210
BstV1I	GCAGC	7 cut(s)	157, 169, 191, 224, 362, 373, 391
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	221
CviQI	GTAC	1 cut(s)	318
DpnI	GATC	3 cut(s)	80, 204, 360
DpnII	GATC	3 cut(s)	78, 202, 358
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	173, 304
FaeI	CATG	1 cut(s)	224
FaiI	YATR	4 cut(s)	122, 222, 246, 357
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	7 cut(s)	171, 180, 183, 213, 351, 387, 405
FokI	GGATG	1 cut(s)	94
Fsp4HI	GCNGC	7 cut(s)	171, 180, 183, 213, 351, 387, 405
GluI	GCNGC	7 cut(s)	171, 180, 183, 213, 351, 387, 405
HapII	CCGG	1 cut(s)	68
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	4 cut(s)	27, 82, 221, 362
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	7 cut(s)	12, 53, 185, 200, 212, 350, 389
HpyF10VI	GCNNNNNNNGC	4 cut(s)	176, 179, 395, 404
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	78, 202, 358
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	7 cut(s)	157, 169, 191, 224, 362, 373, 391
MalI	GATC	3 cut(s)	80, 204, 360
MboI	GATC	3 cut(s)	78, 202, 358
MboII	GAAGA	2 cut(s)	112, 144
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	3 cut(s)	141, 191, 260
MnlI	CCTC	2 cut(s)	151, 265
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	2 cut(s)	175, 306
MvaI	CCWGG	2 cut(s)	175, 306
MwoI	GCNNNNNNNGC	4 cut(s)	176, 179, 395, 404
NdeII	GATC	3 cut(s)	78, 202, 358
NlaIII	CATG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	220
PaqCI	CACCTGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	323
PkrI	GCNGC	7 cut(s)	172, 181, 184, 214, 352, 388, 406
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	173, 304
PspGI	CCWGG	2 cut(s)	173, 304
PstI	CTGCAG	2 cut(s)	14, 214
PsuI	RGATCY	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SatI	GCNGC	7 cut(s)	171, 180, 183, 213, 351, 387, 405
Sau3AI	GATC	3 cut(s)	78, 202, 358
ScrFI	CCNGG	2 cut(s)	175, 306
SetI	ASST	9 cut(s)	118, 162, 184, 211, 217, 244, 280, 295, 388
SfcI	CTRYAG	2 cut(s)	10, 210
Sse9I	AATT	3 cut(s)	141, 191, 260
StyD4I	CCNGG	2 cut(s)	173, 304
TaaI	ACNGT	1 cut(s)	88
TasI	AATT	3 cut(s)	141, 191, 260
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	323
TseI	GCWGC	7 cut(s)	170, 179, 182, 212, 350, 386, 404
TspDTI	ATGAA	2 cut(s)	209, 237
XapI	RAATTY	2 cut(s)	141, 191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.