Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8363381.1

Orthogroup ID

OG0005039

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1090

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8363381.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 665 bp

gctcgccgcgccttttgggccctcaaaggcataataaggctacaggcacttatccgtgggcacttggtgaggagacaagctgttgctacactttgcagtatgttgggcattgtcaagctacaggcactcagtcgtggacgacaagtcaggcagtctattattgggcttgaagtgcaaaaaagatgccatgttacgcctctggagggcaagctagtggatcctgttggagttaatatctctactcaaatggcaaagctgacggttaatgtttttattagtaagcttcttgctttctcacctactgtgatgcctctgcgtttacattatgaacctggagatccaaattcagtcccaaactggttagaacgttggtcagcaacacatttttggaaaccacttccccaaccaagaaaagttcaagattcaaaatctcagagaacacatcgggatcctcaaacaggcagggtaaagcgaagcacccggaggcttccggctgcaaatgttgaaagtgtctcggtgcaagttacctctgaatctgagaaacccaaacgtatccttaggaaagtttccagccagccagcagatccagtgcaggaaaatccacaaattgagcttgaaaaggttaaacgtaacttgaggaaggttcatactcccatagtagagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

221

Amino Acids

25.09

Weight (kDa)

11.3

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005039)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18840 AT1G18840 AT1G18840 AT1G74690
fragaria_vesca	FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290
malus_domestica	MD06G1189500.v1.1 MD14G1196500.v1.1
prunus_persica	Prupe.5G188300_v2.0.a1
pyrus_communis	pycom06g16840 pycom14g16320
rosa_chinensis	RchiOBHm_Chr7g0180771
rosa_laevigata	RLG00000005231
rosa_multiflora	Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226750 Rroxscaffold_3G00272540
rosa_rugosa	Rorug06G0435900
rosa_samantha	Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500
rosa_wichuraiana	Rw7G003100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	1 cut(s)	7
AclI	AACGTT	1 cut(s)	367
AclWI	GGATC	6 cut(s)	212, 225, 332, 443, 456, 578
AcsI	RAATTY	1 cut(s)	343
AdeI	CACNNNGTG	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	203, 458
AgsI	TTSAA	5 cut(s)	170, 419, 426, 506, 617
AhdI	GACNNNNNGTC	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	6 cut(s)	80, 118, 211, 256, 283, 613
AluI	AGCT	6 cut(s)	80, 118, 211, 256, 283, 613
Alw26I	GTCTC	2 cut(s)	67, 517
AlwI	GGATC	6 cut(s)	212, 225, 332, 443, 456, 578
AoxI	GGCC	1 cut(s)	18
ApaI	GGGCCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	343
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	18, 19
AsuC2I	CCSGG	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	79, 288
AxyI	CCTNAGG	1 cut(s)	557
BaeGI	GKGCMC	2 cut(s)	22, 63
BamHI	GGATCC	2 cut(s)	217, 448
BanII	GRGCYC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	481
BciT130I	CCWGG	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	563
BcnI	CCSGG	1 cut(s)	481
BcoDI	GTCTC	2 cut(s)	67, 517
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	2 cut(s)	41, 119
BfuI	GTATCC	1 cut(s)	563
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	7, 495
BlsI	GCNGC	2 cut(s)	8, 496
Bme1390I	CCNGG	2 cut(s)	333, 481
BmeRI	GACNNNNNGTC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	18, 19
BmiI	GGNNCC	3 cut(s)	20, 219, 450
BmrFI	CCNGG	2 cut(s)	333, 481
BmsI	GCATC	2 cut(s)	173, 297
BpmI	CTGGAG	2 cut(s)	221, 354
BpuEI	CTTGAG	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 458
Bse1I	ACTGG	2 cut(s)	362, 587
Bse21I	CCTNAGG	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	203, 458
BseMII	CTCAG	3 cut(s)	142, 446, 528
BseNI	ACTGG	2 cut(s)	362, 587
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	22, 63
BseXI	GCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	481, 491
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	203, 458
BsmAI	GTCTC	2 cut(s)	67, 517
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	20
Bsp120I	GGGCCC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	22, 63
Bsp143I	GATC	4 cut(s)	217, 337, 448, 583
BspACI	CCGC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	141, 445, 529
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	3 cut(s)	20, 219, 450
BspPI	GGATC	6 cut(s)	212, 225, 332, 443, 456, 578
BsrI	ACTGG	2 cut(s)	362, 587
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	4 cut(s)	217, 337, 448, 583
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	262, 304
BstC8I	GCNNGC	4 cut(s)	4, 209, 575, 579
BstDEI	CTNAG	4 cut(s)	128, 432, 537, 557
BstDSI	CCRYGG	1 cut(s)	55
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	4 cut(s)	220, 340, 451, 586
BstMAI	GTCTC	2 cut(s)	67, 517
BstMBI	GATC	4 cut(s)	217, 337, 448, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	8, 17, 172
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	331, 479
BstSFI	CTRYAG	2 cut(s)	41, 119
BstSLI	GKGCMC	2 cut(s)	22, 63
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	4 cut(s)	217, 337, 448, 583
BstYI	RGATCY	4 cut(s)	217, 337, 448, 583
Bsu36I	CCTNAGG	1 cut(s)	557
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	4 cut(s)	4, 209, 575, 579
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	18, 19
CviAII	CATG	1 cut(s)	188
DdeI	CTNAG	4 cut(s)	128, 432, 537, 557
DpnI	GATC	4 cut(s)	219, 339, 450, 585
DpnII	GATC	4 cut(s)	217, 337, 448, 583
DraIII	CACNNNGTG	1 cut(s)	67
DriI	GACNNNNNGTC	1 cut(s)	143
Eam1105I	GACNNNNNGTC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	1 cut(s)	191
FaiI	YATR	6 cut(s)	32, 101, 189, 327, 648, 656
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	7, 495
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	7, 495
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	7, 495
GsuI	CTGGAG	2 cut(s)	221, 354
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	2 cut(s)	481, 491
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	2 cut(s)	422, 533
HpaII	CCGG	2 cut(s)	481, 491
HphI	GGTGA	2 cut(s)	79, 288
Hpy166II	GTNNAC	2 cut(s)	137, 320
Hpy188I	TCNGA	3 cut(s)	435, 532, 538
Hpy188III	TCNNGA	3 cut(s)	200, 419, 446
Hpy8I	GTNNAC	2 cut(s)	137, 320
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	2 cut(s)	262, 304
HpyCH4IV	ACGT	3 cut(s)	367, 550, 628
HpyCH4V	TGCA	5 cut(s)	96, 175, 497, 520, 592
HpyF10VI	GCNNNNNNNGC	3 cut(s)	8, 17, 172
HpyF3I	CTNAG	4 cut(s)	128, 432, 537, 557
HpySE526I	ACGT	3 cut(s)	367, 550, 628
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	4 cut(s)	217, 337, 448, 583
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	2 cut(s)	173, 297
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	3 cut(s)	367, 550, 628
MaeIII	GTNAC	3 cut(s)	190, 523, 629
MalI	GATC	4 cut(s)	219, 339, 450, 585
MboI	GATC	4 cut(s)	217, 337, 448, 583
MflI	RGATCY	4 cut(s)	217, 337, 448, 583
MhlI	GDGCHC	2 cut(s)	22, 63
MluCI	AATT	2 cut(s)	343, 606
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	9 cut(s)	32, 63, 196, 207, 321, 462, 477, 538, 630
MseI	TTAA	3 cut(s)	231, 264, 624
MspI	CCGG	2 cut(s)	481, 491
MspR9I	CCNGG	2 cut(s)	333, 481
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	8, 17, 172
NciI	CCSGG	1 cut(s)	481
NdeII	GATC	4 cut(s)	217, 337, 448, 583
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	3 cut(s)	20, 219, 450
PfeI	GAWTC	2 cut(s)	422, 533
PkrI	GCNGC	2 cut(s)	8, 496
Psp1406I	AACGTT	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	20, 219, 450
PspOMI	GGGCCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	18, 19
PsuI	RGATCY	4 cut(s)	217, 337, 448, 583
SaqAI	TTAA	3 cut(s)	231, 264, 624
SatI	GCNGC	2 cut(s)	7, 495
Sau3AI	GATC	4 cut(s)	217, 337, 448, 583
Sau96I	GGNCC	2 cut(s)	18, 19
ScrFI	CCNGG	2 cut(s)	333, 481
SduI	GDGCHC	2 cut(s)	22, 63
SfaNI	GCATC	2 cut(s)	173, 297
SfcI	CTRYAG	2 cut(s)	41, 119
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	2 cut(s)	343, 606
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	331, 479
TaaI	ACNGT	2 cut(s)	262, 304
TaiI	ACGT	3 cut(s)	370, 553, 631
TasI	AATT	2 cut(s)	343, 606
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	422, 533
Tru1I	TTAA	3 cut(s)	231, 264, 624
Tru9I	TTAA	3 cut(s)	231, 264, 624
TscAI	CASTG	1 cut(s)	594
TseI	GCWGC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	342, 635
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	456
XapI	RAATTY	1 cut(s)	343
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.