iq-domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18840 AT1G18840 AT1G18840 AT1G74690 |
| fragaria_vesca | FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 FvH4_5g15290 |
| malus_domestica | MD06G1189500.v1.1 MD14G1196500.v1.1 |
| prunus_persica | Prupe.5G188300_v2.0.a1 |
| pyrus_communis | pycom06g16840 pycom14g16320 |
| rosa_chinensis | RchiOBHm_Chr7g0180771 |
| rosa_laevigata | RLG00000005231 |
| rosa_multiflora | Rmu_co8363381.1_g000001 Rmu_co8401147.1_g000001 Rmu_co8418241.1_g000001 Rmu_sc0007457.1_g000011 Rmu_sc0026332.1_g000002 Rmu_sc0030245.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00226750 Rroxscaffold_3G00272540 |
| rosa_rugosa | Rorug06G0435900 |
| rosa_samantha | Rh1AG249900 Rh7AG037600 Rh7BG037300 Rh7CG039000 Rh7DG037500 |
| rosa_wichuraiana | Rw7G003100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 470 |
| AarI | CACCTGC | 1 cut(s) | 441 |
| Acc36I | ACCTGC | 1 cut(s) | 441 |
| AccII | CGCG | 1 cut(s) | 558 |
| AciI | CCGC | 2 cut(s) | 556, 1795 |
| AclI | AACGTT | 2 cut(s) | 916, 1648 |
| AcsI | RAATTY | 5 cut(s) | 5, 365, 415, 892, 1213 |
| AcuI | CTGAAG | 1 cut(s) | 233 |
| AdeI | CACNNNGTG | 2 cut(s) | 616, 1490 |
| AfaI | GTAC | 1 cut(s) | 232 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 67, 280, 752, 1007, 1748 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 692 |
| AjnI | CCWGG | 3 cut(s) | 55, 397, 880 |
| Alw26I | GTCTC | 4 cut(s) | 616, 1066, 1845, 1911 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1258, 1703 |
| AoxI | GGCC | 7 cut(s) | 23, 27, 48, 58, 83, 126, 567 |
| ApaI | GGGCCC | 1 cut(s) | 571 |
| ApoI | RAATTY | 5 cut(s) | 5, 365, 415, 892, 1213 |
| AspA2I | CCTAGG | 2 cut(s) | 80, 1742 |
| AspLEI | GCGC | 1 cut(s) | 560 |
| AspS9I | GGNCC | 8 cut(s) | 23, 28, 48, 59, 84, 126, 567, 568 |
| AsuC2I | CCSGG | 3 cut(s) | 92, 125, 1030 |
| AsuHPI | GGTGA | 4 cut(s) | 281, 628, 837, 1904 |
| AvrII | CCTAGG | 2 cut(s) | 80, 1742 |
| AxyI | CCTNAGG | 1 cut(s) | 1106 |
| BaeGI | GKGCMC | 4 cut(s) | 571, 612, 1466, 1732 |
| BamHI | GGATCC | 2 cut(s) | 766, 997 |
| BanII | GRGCYC | 1 cut(s) | 571 |
| BbvCI | CCTCAGC | 1 cut(s) | 1724 |
| BccI | CCATC | 3 cut(s) | 339, 1396, 1816 |
| BceAI | ACGGC | 1 cut(s) | 35 |
| BciT130I | CCWGG | 3 cut(s) | 57, 399, 882 |
| BciVI | GTATCC | 1 cut(s) | 1112 |
| BclI | TGATCA | 1 cut(s) | 1426 |
| BcnI | CCSGG | 3 cut(s) | 92, 125, 1030 |
| BcoDI | GTCTC | 4 cut(s) | 616, 1066, 1845, 1911 |
| BfaI | CTAG | 4 cut(s) | 45, 81, 761, 1743 |
| BfmI | CTRYAG | 4 cut(s) | 434, 590, 668, 1500 |
| BfuAI | ACCTGC | 1 cut(s) | 441 |
| BfuI | GTATCC | 1 cut(s) | 1112 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 566 |
| BlnI | CCTAGG | 2 cut(s) | 80, 1742 |
| Bme1390I | CCNGG | 6 cut(s) | 57, 92, 125, 399, 882, 1030 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 692 |
| BmgT120I | GGNCC | 8 cut(s) | 23, 28, 48, 59, 84, 126, 567, 568 |
| BmiI | GGNNCC | 3 cut(s) | 569, 768, 999 |
| BmrFI | CCNGG | 6 cut(s) | 57, 92, 125, 399, 882, 1030 |
| BmsI | GCATC | 4 cut(s) | 722, 846, 1277, 1357 |
| BpmI | CTGGAG | 4 cut(s) | 770, 903, 1617, 1775 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1724 |
| BpuEI | CTTGAG | 2 cut(s) | 1204, 1897 |
| BpuMI | CCSGG | 3 cut(s) | 92, 125, 1030 |
| BsaJI | CCNNGG | 5 cut(s) | 80, 398, 604, 1742, 1844 |
| BsaWI | WCCGGW | 1 cut(s) | 114 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 67, 280, 752, 1007, 1748 |
| Bse118I | RCCGGY | 2 cut(s) | 25, 291 |
| Bse1I | ACTGG | 4 cut(s) | 911, 1136, 1471, 1758 |
| Bse21I | CCTNAGG | 1 cut(s) | 1106 |
| Bse3DI | GCAATG | 4 cut(s) | 284, 1443, 1603, 1679 |
| BseBI | CCWGG | 3 cut(s) | 57, 399, 882 |
| BseDI | CCNNGG | 5 cut(s) | 80, 398, 604, 1742, 1844 |
| BseGI | GGATG | 2 cut(s) | 331, 1548 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 67, 280, 752, 1007, 1748 |
| BseMI | GCAATG | 4 cut(s) | 284, 1443, 1603, 1679 |
| BseMII | CTCAG | 7 cut(s) | 691, 995, 1077, 1253, 1695, 1715, 1764 |
| BseNI | ACTGG | 4 cut(s) | 911, 1136, 1471, 1758 |
| BseRI | GAGGAG | 1 cut(s) | 634 |
| BseSI | GKGCMC | 4 cut(s) | 571, 612, 1466, 1732 |
| BsgI | GTGCAG | 2 cut(s) | 1160, 1241 |
| Bsh1236I | CGCG | 1 cut(s) | 558 |
| BshFI | GGCC | 7 cut(s) | 25, 29, 50, 60, 85, 128, 569 |
| BsiSI | CCGG | 7 cut(s) | 26, 92, 115, 124, 292, 1030, 1040 |
| BslFI | GGGAC | 1 cut(s) | 884 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 67, 280, 752, 1007, 1748 |
| BsmAI | GTCTC | 4 cut(s) | 616, 1066, 1845, 1911 |
| BsmBI | CGTCTC | 1 cut(s) | 1911 |
| BsmFI | GGGAC | 1 cut(s) | 884 |
| BsnI | GGCC | 7 cut(s) | 25, 29, 50, 60, 85, 128, 569 |
| Bsp120I | GGGCCC | 1 cut(s) | 567 |
| Bsp1286I | GDGCHC | 4 cut(s) | 571, 612, 1466, 1732 |
| Bsp1407I | TGTACA | 1 cut(s) | 230 |
| BspACI | CCGC | 2 cut(s) | 556, 1795 |
| BspANI | GGCC | 7 cut(s) | 25, 29, 50, 60, 85, 128, 569 |
| BspCNI | CTCAG | 7 cut(s) | 690, 994, 1078, 1252, 1696, 1716, 1765 |
| BspFNI | CGCG | 1 cut(s) | 558 |
| BspHI | TCATGA | 1 cut(s) | 444 |
| BspLI | GGNNCC | 3 cut(s) | 569, 768, 999 |
| BspMAI | CTGCAG | 2 cut(s) | 438, 1504 |
| BspMI | ACCTGC | 1 cut(s) | 441 |
| BsrDI | GCAATG | 4 cut(s) | 284, 1443, 1603, 1679 |
| BsrFI | RCCGGY | 2 cut(s) | 25, 291 |
| BsrGI | TGTACA | 1 cut(s) | 230 |
| BsrI | ACTGG | 4 cut(s) | 911, 1136, 1471, 1758 |
| BssAI | RCCGGY | 2 cut(s) | 25, 291 |
| BssECI | CCNNGG | 5 cut(s) | 80, 398, 604, 1742, 1844 |
| BssT1I | CCWWGG | 3 cut(s) | 80, 1742, 1844 |
| Bst2UI | CCWGG | 3 cut(s) | 57, 399, 882 |
| Bst4CI | ACNGT | 5 cut(s) | 312, 811, 853, 1673, 1839 |
| Bst6I | CTCTTC | 1 cut(s) | 351 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 530 |
| BstAUI | TGTACA | 1 cut(s) | 230 |
| BstC8I | GCNNGC | 7 cut(s) | 27, 510, 553, 758, 1124, 1128, 1930 |
| BstDEI | CTNAG | 9 cut(s) | 677, 981, 1086, 1106, 1239, 1487, 1704, 1724, 1773 |
| BstDSI | CCRYGG | 1 cut(s) | 604 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1005 |
| BstF5I | GGATG | 2 cut(s) | 331, 1548 |
| BstFNI | CGCG | 1 cut(s) | 558 |
| BstHHI | GCGC | 1 cut(s) | 560 |
| BstMAI | GTCTC | 4 cut(s) | 616, 1066, 1845, 1911 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 400, 403, 521, 530, 557, 566, 721, 1934 |
| BstNI | CCWGG | 3 cut(s) | 57, 399, 882 |
| BstSCI | CCNGG | 6 cut(s) | 55, 90, 123, 397, 880, 1028 |
| BstSFI | CTRYAG | 4 cut(s) | 434, 590, 668, 1500 |
| BstSLI | GKGCMC | 4 cut(s) | 571, 612, 1466, 1732 |
| BstUI | CGCG | 1 cut(s) | 558 |
| BstX2I | RGATCY | 6 cut(s) | 426, 766, 886, 997, 1132, 1736 |
| BstYI | RGATCY | 6 cut(s) | 426, 766, 886, 997, 1132, 1736 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1106 |
| BsuI | GTATCC | 1 cut(s) | 1112 |
| BsuRI | GGCC | 7 cut(s) | 25, 29, 50, 60, 85, 128, 569 |
| BtgI | CCRYGG | 1 cut(s) | 604 |
| BtsCI | GGATG | 2 cut(s) | 331, 1548 |
| BtsIMutI | CAGTG | 3 cut(s) | 173, 1143, 1464 |
| BveI | ACCTGC | 1 cut(s) | 441 |
| Cac8I | GCNNGC | 7 cut(s) | 27, 510, 553, 758, 1124, 1128, 1930 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1258, 1703 |
| CciI | TCATGA | 1 cut(s) | 444 |
| CfoI | GCGC | 1 cut(s) | 560 |
| Cfr10I | RCCGGY | 2 cut(s) | 25, 291 |
| Cfr13I | GGNCC | 8 cut(s) | 23, 28, 48, 59, 84, 126, 567, 568 |
| Csp6I | GTAC | 1 cut(s) | 231 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 1922 |
| CviAII | CATG | 4 cut(s) | 120, 183, 445, 737 |
| CviQI | GTAC | 1 cut(s) | 231 |
| DdeI | CTNAG | 9 cut(s) | 677, 981, 1086, 1106, 1239, 1487, 1704, 1724, 1773 |
| DraIII | CACNNNGTG | 2 cut(s) | 616, 1490 |
| DriI | GACNNNNNGTC | 1 cut(s) | 692 |
| Eam1104I | CTCTTC | 1 cut(s) | 351 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 692 |
| EarI | CTCTTC | 1 cut(s) | 351 |
| Eco130I | CCWWGG | 3 cut(s) | 80, 1742, 1844 |
| Eco24I | GRGCYC | 1 cut(s) | 571 |
| Eco57I | CTGAAG | 1 cut(s) | 233 |
| Eco81I | CCTNAGG | 1 cut(s) | 1106 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1005 |
| EcoO109I | RGGNCCY | 1 cut(s) | 568 |
| EcoRI | GAATTC | 1 cut(s) | 1213 |
| EcoRII | CCWGG | 3 cut(s) | 55, 397, 880 |
| EcoT14I | CCWWGG | 3 cut(s) | 80, 1742, 1844 |
| EcoT38I | GRGCYC | 1 cut(s) | 571 |
| ErhI | CCWWGG | 3 cut(s) | 80, 1742, 1844 |
| Esp3I | CGTCTC | 1 cut(s) | 1911 |
| FaeI | CATG | 4 cut(s) | 123, 186, 448, 740 |
| FaqI | GGGAC | 1 cut(s) | 884 |
| FatI | CATG | 4 cut(s) | 119, 182, 444, 736 |
| FbaI | TGATCA | 1 cut(s) | 1426 |
| FokI | GGATG | 2 cut(s) | 318, 1535 |
| FriOI | GRGCYC | 1 cut(s) | 571 |
| FseI | GGCCGGCC | 1 cut(s) | 29 |
| FspBI | CTAG | 4 cut(s) | 45, 81, 761, 1743 |
| GlaI | GCGC | 1 cut(s) | 559 |
| GsuI | CTGGAG | 4 cut(s) | 770, 903, 1617, 1775 |
| HaeIII | GGCC | 7 cut(s) | 25, 29, 50, 60, 85, 128, 569 |
| HapII | CCGG | 7 cut(s) | 26, 92, 115, 124, 292, 1030, 1040 |
| HhaI | GCGC | 1 cut(s) | 560 |
| Hin1II | CATG | 4 cut(s) | 123, 186, 448, 740 |
| Hin6I | GCGC | 1 cut(s) | 558 |
| HinP1I | GCGC | 1 cut(s) | 558 |
| HindIII | AAGCTT | 2 cut(s) | 830, 1623 |
| HinfI | GANTC | 7 cut(s) | 971, 1082, 1243, 1255, 1508, 1706, 1884 |
| HpaII | CCGG | 7 cut(s) | 26, 92, 115, 124, 292, 1030, 1040 |
| HphI | GGTGA | 4 cut(s) | 281, 628, 837, 1904 |
| Hpy166II | GTNNAC | 2 cut(s) | 686, 869 |
| Hpy188I | TCNGA | 7 cut(s) | 500, 984, 1081, 1087, 1242, 1423, 1654 |
| Hpy8I | GTNNAC | 2 cut(s) | 686, 869 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 5 cut(s) | 209, 280, 1183, 1292, 1918 |
| HpyCH4III | ACNGT | 5 cut(s) | 312, 811, 853, 1673, 1839 |
| HpyCH4IV | ACGT | 5 cut(s) | 37, 916, 1099, 1177, 1648 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 400, 403, 521, 530, 557, 566, 721, 1934 |
| HpyF3I | CTNAG | 9 cut(s) | 677, 981, 1086, 1106, 1239, 1487, 1704, 1724, 1773 |
| HpySE526I | ACGT | 5 cut(s) | 37, 916, 1099, 1177, 1648 |
| Hsp92II | CATG | 4 cut(s) | 123, 186, 448, 740 |
| HspAI | GCGC | 1 cut(s) | 558 |
| KroI | GCCGGC | 1 cut(s) | 25 |
| KroNI | GCCGGC | 1 cut(s) | 27 |
| Ksp22I | TGATCA | 1 cut(s) | 1426 |
| LmnI | GCTCC | 1 cut(s) | 117 |
| LweI | GCATC | 4 cut(s) | 722, 846, 1277, 1357 |
| MaeI | CTAG | 4 cut(s) | 45, 81, 761, 1743 |
| MaeII | ACGT | 5 cut(s) | 37, 916, 1099, 1177, 1648 |
| MaeIII | GTNAC | 4 cut(s) | 739, 1072, 1178, 1892 |
| MboII | GAAGA | 5 cut(s) | 336, 368, 1336, 1342, 1595 |
| MfeI | CAATTG | 1 cut(s) | 1341 |
| MflI | RGATCY | 6 cut(s) | 426, 766, 886, 997, 1132, 1736 |
| MhlI | GDGCHC | 4 cut(s) | 571, 612, 1466, 1732 |
| MluCI | AATT | 9 cut(s) | 5, 365, 415, 892, 1155, 1213, 1230, 1312, 1341 |
| MlyI | GAGTC | 2 cut(s) | 1517, 1715 |
| MmeI | TCCRAC | 2 cut(s) | 754, 1700 |
| MroNI | GCCGGC | 1 cut(s) | 25 |
| MseI | TTAA | 7 cut(s) | 135, 780, 813, 1173, 1410, 1520, 1589 |
| MspA1I | CMGCKG | 1 cut(s) | 406 |
| MspI | CCGG | 7 cut(s) | 26, 92, 115, 124, 292, 1030, 1040 |
| MspR9I | CCNGG | 6 cut(s) | 57, 92, 125, 399, 882, 1030 |
| MunI | CAATTG | 1 cut(s) | 1341 |
| MvaI | CCWGG | 3 cut(s) | 57, 399, 882 |
| MvnI | CGCG | 1 cut(s) | 558 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 400, 403, 521, 530, 557, 566, 721, 1934 |
| NaeI | GCCGGC | 1 cut(s) | 27 |
| NciI | CCSGG | 3 cut(s) | 92, 125, 1030 |
| NgoMIV | GCCGGC | 1 cut(s) | 25 |
| NlaIII | CATG | 4 cut(s) | 123, 186, 448, 740 |
| NlaIV | GGNNCC | 3 cut(s) | 569, 768, 999 |
| NmuCI | GTSAC | 1 cut(s) | 1892 |
| PagI | TCATGA | 1 cut(s) | 444 |
| PaqCI | CACCTGC | 1 cut(s) | 441 |
| PdiI | GCCGGC | 1 cut(s) | 27 |
| PfeI | GAWTC | 5 cut(s) | 971, 1082, 1243, 1255, 1884 |
| PleI | GAGTC | 2 cut(s) | 1516, 1714 |
| PpsI | GAGTC | 2 cut(s) | 1516, 1714 |
| PsiI | TTATAA | 1 cut(s) | 470 |
| Psp1406I | AACGTT | 2 cut(s) | 916, 1648 |
| Psp6I | CCWGG | 3 cut(s) | 55, 397, 880 |
| PspGI | CCWGG | 3 cut(s) | 55, 397, 880 |
| PspN4I | GGNNCC | 3 cut(s) | 569, 768, 999 |
| PspOMI | GGGCCC | 1 cut(s) | 567 |
| PspPI | GGNCC | 8 cut(s) | 23, 28, 48, 59, 84, 126, 567, 568 |
| PstI | CTGCAG | 2 cut(s) | 438, 1504 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1258, 1703 |
| PsuI | RGATCY | 6 cut(s) | 426, 766, 886, 997, 1132, 1736 |
| PvuII | CAGCTG | 1 cut(s) | 406 |
| RigI | GGCCGGCC | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 232 |
| RsaNI | GTAC | 1 cut(s) | 231 |
| SaqAI | TTAA | 7 cut(s) | 135, 780, 813, 1173, 1410, 1520, 1589 |
| Sau96I | GGNCC | 8 cut(s) | 23, 28, 48, 59, 84, 126, 567, 568 |
| SchI | GAGTC | 2 cut(s) | 1517, 1715 |
| ScrFI | CCNGG | 6 cut(s) | 57, 92, 125, 399, 882, 1030 |
| SduI | GDGCHC | 4 cut(s) | 571, 612, 1466, 1732 |
| SfaNI | GCATC | 4 cut(s) | 722, 846, 1277, 1357 |
| SfcI | CTRYAG | 4 cut(s) | 434, 590, 668, 1500 |
| SmlI | CTYRAG | 2 cut(s) | 1183, 1912 |
| SmoI | CTYRAG | 2 cut(s) | 1183, 1912 |
| Sse9I | AATT | 9 cut(s) | 5, 365, 415, 892, 1155, 1213, 1230, 1312, 1341 |
| SsiI | CCGC | 2 cut(s) | 556, 1795 |
| SspI | AATATT | 1 cut(s) | 76 |
| SspMI | CTAG | 4 cut(s) | 45, 81, 761, 1743 |
| StyD4I | CCNGG | 6 cut(s) | 55, 90, 123, 397, 880, 1028 |
| StyI | CCWWGG | 3 cut(s) | 80, 1742, 1844 |
| TaaI | ACNGT | 5 cut(s) | 312, 811, 853, 1673, 1839 |
| TaiI | ACGT | 5 cut(s) | 40, 919, 1102, 1180, 1651 |
| TasI | AATT | 9 cut(s) | 5, 365, 415, 892, 1155, 1213, 1230, 1312, 1341 |
| TatI | WGTACW | 1 cut(s) | 230 |
| TauI | GCSGC | 2 cut(s) | 558, 1797 |
| TfiI | GAWTC | 5 cut(s) | 971, 1082, 1243, 1255, 1884 |
| Tru1I | TTAA | 7 cut(s) | 135, 780, 813, 1173, 1410, 1520, 1589 |
| Tru9I | TTAA | 7 cut(s) | 135, 780, 813, 1173, 1410, 1520, 1589 |
| TscAI | CASTG | 3 cut(s) | 180, 1143, 1471 |
| TseFI | GTSAC | 1 cut(s) | 1892 |
| Tsp45I | GTSAC | 1 cut(s) | 1892 |
| TspDTI | ATGAA | 8 cut(s) | 17, 433, 461, 891, 1184, 1343, 1509, 1557 |
| TspGWI | ACGGA | 2 cut(s) | 593, 1241 |
| TspRI | CASTG | 3 cut(s) | 180, 1143, 1471 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1005 |
| XapI | RAATTY | 5 cut(s) | 5, 365, 415, 892, 1213 |
| XmaJI | CCTAGG | 2 cut(s) | 80, 1742 |
| XspI | CTAG | 4 cut(s) | 45, 81, 761, 1743 |