Rmu_sc0007457.1_g000011

iq-domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007457.1
Physical Location & Seq
Reverse (-)
74961 .. 79445
4485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007457.1_g000011.1.cds

Sequence Viewer

Length: 1953 bp
atgaaattttgtgttggaaacgggccggcccaaatacgtcgtgctagggccgtgccaggcccattacgggctaatattcctaggcccaacccggctcgttattctaacttgctccggtcatgccgggccacttttaagtgtgctggatcacattctgggtttggctcactctcactgaactcatgggaaagggaaagttggtttagggatttggaaggttgttctacttgtacatttgaaaacgggcttcaggattgtgtgttattagccttcctgcaatgggcaaatcaccggctaaatggatcaagactgttctgtttgggaagaagccatccaaacctaatatatcaaaaggaagagagagaatttcaaatgagaaagaggtggtggttgctgccagggcagctgcaactgaatttgttgcagatccacctgcagcttttcatgaaagcacaaacaccacagcttataacaaaggcgtatgatcctgacaaaatcagacaagagcaagctgcaacaaaggcacaggctgcctttaggggttatctggctcgccgcgccttttgggccctcaaaggcataataaggctacaggcacttatccgtgggcacttggtgaggagacaagctgttgctacactttgcagtatgttgggcattgtcaagctacaggcactcagtcgtggacgacaagtcaggcagtctattattgggcttgaagtgcaaaaaagatgccatgttacgcctctggagggcaagctagtggatcctgttggagttaatatctctactcaaatggcaaagctgacggttaatgtttttattagtaagcttcttgctttctcacctactgtgatgcctctgcgtttacattatgaacctggagatccaaattcagtcccaaactggttagaacgttggtcagcaacacatttttggaaaccacttccccaaccaagaaaagttcaagattcaaaatctcagagaacacatcgggatcctcaaacaggcagggtaaagcgaagcacccggaggcttccggctgcaaatgttgaaagtgtctcggtgcaagttacctctgaatctgagaaacccaaacgtatccttaggaaagtttccagccagccagcagatccagtgcaggaaaatccacaaattgagcttgaaaaggttaaacgtaacttgaggaaggttcatactcccatagtagagaattctgtgcagacggaaattgaagctcagaatctcacacagaatctggaaaaggcatcaagtgtttcgggtcataatgtttttgaagggatcacaaataattctgttgagaagatgaagaatgagccaattgttgctctgtccaatctgcctgatgcagaaataactcctgaaccatcagcagcaaaagaggtctttaacttattatccgatgatcaagttgcaatggatttgaagcctttgacagagggcactggtaaagaaataaatacacttagtgatgaagctgcagttgagtcaaacatattaacagagagcagtaaaaaagatgaaaacatccctgttccaagtgtggttttgagccaaaaggaagatttaacaagcaatgacaaccagaaatcaagcaggaaagcttcaactccagccaaacaagaacgttcagagaatgggttgcaaaacagtccaacattgccaagctatatggcagcaactgagtctgcaaaggcaaagctgagggcacaaggatctcctaggcttggactggaggctactgaaaagactgagaaaactaactccactcgccgccattctctgccatcatcagctaatggcaaaatcacttcacagtctccaaggacacagaaacttgttcaatcaggtggaaaaggaggaatcaaaggtgacaaatctctgtcagcctcaagagacgggaaggcaagccaagcagagtggagaagatga

Protein Analysis

650

Amino Acids

72.46

Weight (kDa)

10.01

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AarI CACCTGC 1 cut(s) 441
Acc36I ACCTGC 1 cut(s) 441
AccII CGCG 1 cut(s) 558
AciI CCGC 2 cut(s) 556, 1795
AclI AACGTT 2 cut(s) 916, 1648
AcsI RAATTY 5 cut(s) 5, 365, 415, 892, 1213
AcuI CTGAAG 1 cut(s) 233
AdeI CACNNNGTG 2 cut(s) 616, 1490
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 5 cut(s) 67, 280, 752, 1007, 1748
AhdI GACNNNNNGTC 1 cut(s) 692
AjnI CCWGG 3 cut(s) 55, 397, 880
Alw26I GTCTC 4 cut(s) 616, 1066, 1845, 1911
AlwNI CAGNNNCTG 2 cut(s) 1258, 1703
AoxI GGCC 7 cut(s) 23, 27, 48, 58, 83, 126, 567
ApaI GGGCCC 1 cut(s) 571
ApoI RAATTY 5 cut(s) 5, 365, 415, 892, 1213
AspA2I CCTAGG 2 cut(s) 80, 1742
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 8 cut(s) 23, 28, 48, 59, 84, 126, 567, 568
AsuC2I CCSGG 3 cut(s) 92, 125, 1030
AsuHPI GGTGA 4 cut(s) 281, 628, 837, 1904
AvrII CCTAGG 2 cut(s) 80, 1742
AxyI CCTNAGG 1 cut(s) 1106
BaeGI GKGCMC 4 cut(s) 571, 612, 1466, 1732
BamHI GGATCC 2 cut(s) 766, 997
BanII GRGCYC 1 cut(s) 571
BbvCI CCTCAGC 1 cut(s) 1724
BccI CCATC 3 cut(s) 339, 1396, 1816
BceAI ACGGC 1 cut(s) 35
BciT130I CCWGG 3 cut(s) 57, 399, 882
BciVI GTATCC 1 cut(s) 1112
BclI TGATCA 1 cut(s) 1426
BcnI CCSGG 3 cut(s) 92, 125, 1030
BcoDI GTCTC 4 cut(s) 616, 1066, 1845, 1911
BfaI CTAG 4 cut(s) 45, 81, 761, 1743
BfmI CTRYAG 4 cut(s) 434, 590, 668, 1500
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 566
BlnI CCTAGG 2 cut(s) 80, 1742
Bme1390I CCNGG 6 cut(s) 57, 92, 125, 399, 882, 1030
BmeRI GACNNNNNGTC 1 cut(s) 692
BmgT120I GGNCC 8 cut(s) 23, 28, 48, 59, 84, 126, 567, 568
BmiI GGNNCC 3 cut(s) 569, 768, 999
BmrFI CCNGG 6 cut(s) 57, 92, 125, 399, 882, 1030
BmsI GCATC 4 cut(s) 722, 846, 1277, 1357
BpmI CTGGAG 4 cut(s) 770, 903, 1617, 1775
Bpu10I CCTNAGC 1 cut(s) 1724
BpuEI CTTGAG 2 cut(s) 1204, 1897
BpuMI CCSGG 3 cut(s) 92, 125, 1030
BsaJI CCNNGG 5 cut(s) 80, 398, 604, 1742, 1844
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 280, 752, 1007, 1748
Bse118I RCCGGY 2 cut(s) 25, 291
Bse1I ACTGG 4 cut(s) 911, 1136, 1471, 1758
Bse21I CCTNAGG 1 cut(s) 1106
Bse3DI GCAATG 4 cut(s) 284, 1443, 1603, 1679
BseBI CCWGG 3 cut(s) 57, 399, 882
BseDI CCNNGG 5 cut(s) 80, 398, 604, 1742, 1844
BseGI GGATG 2 cut(s) 331, 1548
BseLI CCNNNNNNNGG 5 cut(s) 67, 280, 752, 1007, 1748
BseMI GCAATG 4 cut(s) 284, 1443, 1603, 1679
BseMII CTCAG 7 cut(s) 691, 995, 1077, 1253, 1695, 1715, 1764
BseNI ACTGG 4 cut(s) 911, 1136, 1471, 1758
BseRI GAGGAG 1 cut(s) 634
BseSI GKGCMC 4 cut(s) 571, 612, 1466, 1732
BsgI GTGCAG 2 cut(s) 1160, 1241
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 7 cut(s) 25, 29, 50, 60, 85, 128, 569
BsiSI CCGG 7 cut(s) 26, 92, 115, 124, 292, 1030, 1040
BslFI GGGAC 1 cut(s) 884
BslI CCNNNNNNNGG 5 cut(s) 67, 280, 752, 1007, 1748
BsmAI GTCTC 4 cut(s) 616, 1066, 1845, 1911
BsmBI CGTCTC 1 cut(s) 1911
BsmFI GGGAC 1 cut(s) 884
BsnI GGCC 7 cut(s) 25, 29, 50, 60, 85, 128, 569
Bsp120I GGGCCC 1 cut(s) 567
Bsp1286I GDGCHC 4 cut(s) 571, 612, 1466, 1732
Bsp1407I TGTACA 1 cut(s) 230
BspACI CCGC 2 cut(s) 556, 1795
BspANI GGCC 7 cut(s) 25, 29, 50, 60, 85, 128, 569
BspCNI CTCAG 7 cut(s) 690, 994, 1078, 1252, 1696, 1716, 1765
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 3 cut(s) 569, 768, 999
BspMAI CTGCAG 2 cut(s) 438, 1504
BspMI ACCTGC 1 cut(s) 441
BsrDI GCAATG 4 cut(s) 284, 1443, 1603, 1679
BsrFI RCCGGY 2 cut(s) 25, 291
BsrGI TGTACA 1 cut(s) 230
BsrI ACTGG 4 cut(s) 911, 1136, 1471, 1758
BssAI RCCGGY 2 cut(s) 25, 291
BssECI CCNNGG 5 cut(s) 80, 398, 604, 1742, 1844
BssT1I CCWWGG 3 cut(s) 80, 1742, 1844
Bst2UI CCWGG 3 cut(s) 57, 399, 882
Bst4CI ACNGT 5 cut(s) 312, 811, 853, 1673, 1839
Bst6I CTCTTC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 230
BstC8I GCNNGC 7 cut(s) 27, 510, 553, 758, 1124, 1128, 1930
BstDEI CTNAG 9 cut(s) 677, 981, 1086, 1106, 1239, 1487, 1704, 1724, 1773
BstDSI CCRYGG 1 cut(s) 604
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 2 cut(s) 331, 1548
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 560
BstMAI GTCTC 4 cut(s) 616, 1066, 1845, 1911
BstMWI GCNNNNNNNGC 8 cut(s) 400, 403, 521, 530, 557, 566, 721, 1934
BstNI CCWGG 3 cut(s) 57, 399, 882
BstSCI CCNGG 6 cut(s) 55, 90, 123, 397, 880, 1028
BstSFI CTRYAG 4 cut(s) 434, 590, 668, 1500
BstSLI GKGCMC 4 cut(s) 571, 612, 1466, 1732
BstUI CGCG 1 cut(s) 558
BstX2I RGATCY 6 cut(s) 426, 766, 886, 997, 1132, 1736
BstYI RGATCY 6 cut(s) 426, 766, 886, 997, 1132, 1736
Bsu36I CCTNAGG 1 cut(s) 1106
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 7 cut(s) 25, 29, 50, 60, 85, 128, 569
BtgI CCRYGG 1 cut(s) 604
BtsCI GGATG 2 cut(s) 331, 1548
BtsIMutI CAGTG 3 cut(s) 173, 1143, 1464
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 7 cut(s) 27, 510, 553, 758, 1124, 1128, 1930
CaiI CAGNNNCTG 2 cut(s) 1258, 1703
CciI TCATGA 1 cut(s) 444
CfoI GCGC 1 cut(s) 560
Cfr10I RCCGGY 2 cut(s) 25, 291
Cfr13I GGNCC 8 cut(s) 23, 28, 48, 59, 84, 126, 567, 568
Csp6I GTAC 1 cut(s) 231
CspCI CAANNNNNGTGG 1 cut(s) 1922
CviAII CATG 4 cut(s) 120, 183, 445, 737
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 9 cut(s) 677, 981, 1086, 1106, 1239, 1487, 1704, 1724, 1773
DraIII CACNNNGTG 2 cut(s) 616, 1490
DriI GACNNNNNGTC 1 cut(s) 692
Eam1104I CTCTTC 1 cut(s) 351
Eam1105I GACNNNNNGTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 3 cut(s) 80, 1742, 1844
Eco24I GRGCYC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 233
Eco81I CCTNAGG 1 cut(s) 1106
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 1 cut(s) 568
EcoRI GAATTC 1 cut(s) 1213
EcoRII CCWGG 3 cut(s) 55, 397, 880
EcoT14I CCWWGG 3 cut(s) 80, 1742, 1844
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 3 cut(s) 80, 1742, 1844
Esp3I CGTCTC 1 cut(s) 1911
FaeI CATG 4 cut(s) 123, 186, 448, 740
FaqI GGGAC 1 cut(s) 884
FatI CATG 4 cut(s) 119, 182, 444, 736
FbaI TGATCA 1 cut(s) 1426
FokI GGATG 2 cut(s) 318, 1535
FriOI GRGCYC 1 cut(s) 571
FseI GGCCGGCC 1 cut(s) 29
FspBI CTAG 4 cut(s) 45, 81, 761, 1743
GlaI GCGC 1 cut(s) 559
GsuI CTGGAG 4 cut(s) 770, 903, 1617, 1775
HaeIII GGCC 7 cut(s) 25, 29, 50, 60, 85, 128, 569
HapII CCGG 7 cut(s) 26, 92, 115, 124, 292, 1030, 1040
HhaI GCGC 1 cut(s) 560
Hin1II CATG 4 cut(s) 123, 186, 448, 740
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HindIII AAGCTT 2 cut(s) 830, 1623
HinfI GANTC 7 cut(s) 971, 1082, 1243, 1255, 1508, 1706, 1884
HpaII CCGG 7 cut(s) 26, 92, 115, 124, 292, 1030, 1040
HphI GGTGA 4 cut(s) 281, 628, 837, 1904
Hpy166II GTNNAC 2 cut(s) 686, 869
Hpy188I TCNGA 7 cut(s) 500, 984, 1081, 1087, 1242, 1423, 1654
Hpy8I GTNNAC 2 cut(s) 686, 869
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 5 cut(s) 209, 280, 1183, 1292, 1918
HpyCH4III ACNGT 5 cut(s) 312, 811, 853, 1673, 1839
HpyCH4IV ACGT 5 cut(s) 37, 916, 1099, 1177, 1648
HpyF10VI GCNNNNNNNGC 8 cut(s) 400, 403, 521, 530, 557, 566, 721, 1934
HpyF3I CTNAG 9 cut(s) 677, 981, 1086, 1106, 1239, 1487, 1704, 1724, 1773
HpySE526I ACGT 5 cut(s) 37, 916, 1099, 1177, 1648
Hsp92II CATG 4 cut(s) 123, 186, 448, 740
HspAI GCGC 1 cut(s) 558
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 1426
LmnI GCTCC 1 cut(s) 117
LweI GCATC 4 cut(s) 722, 846, 1277, 1357
MaeI CTAG 4 cut(s) 45, 81, 761, 1743
MaeII ACGT 5 cut(s) 37, 916, 1099, 1177, 1648
MaeIII GTNAC 4 cut(s) 739, 1072, 1178, 1892
MboII GAAGA 5 cut(s) 336, 368, 1336, 1342, 1595
MfeI CAATTG 1 cut(s) 1341
MflI RGATCY 6 cut(s) 426, 766, 886, 997, 1132, 1736
MhlI GDGCHC 4 cut(s) 571, 612, 1466, 1732
MluCI AATT 9 cut(s) 5, 365, 415, 892, 1155, 1213, 1230, 1312, 1341
MlyI GAGTC 2 cut(s) 1517, 1715
MmeI TCCRAC 2 cut(s) 754, 1700
MroNI GCCGGC 1 cut(s) 25
MseI TTAA 7 cut(s) 135, 780, 813, 1173, 1410, 1520, 1589
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 7 cut(s) 26, 92, 115, 124, 292, 1030, 1040
MspR9I CCNGG 6 cut(s) 57, 92, 125, 399, 882, 1030
MunI CAATTG 1 cut(s) 1341
MvaI CCWGG 3 cut(s) 57, 399, 882
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 8 cut(s) 400, 403, 521, 530, 557, 566, 721, 1934
NaeI GCCGGC 1 cut(s) 27
NciI CCSGG 3 cut(s) 92, 125, 1030
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 4 cut(s) 123, 186, 448, 740
NlaIV GGNNCC 3 cut(s) 569, 768, 999
NmuCI GTSAC 1 cut(s) 1892
PagI TCATGA 1 cut(s) 444
PaqCI CACCTGC 1 cut(s) 441
PdiI GCCGGC 1 cut(s) 27
PfeI GAWTC 5 cut(s) 971, 1082, 1243, 1255, 1884
PleI GAGTC 2 cut(s) 1516, 1714
PpsI GAGTC 2 cut(s) 1516, 1714
PsiI TTATAA 1 cut(s) 470
Psp1406I AACGTT 2 cut(s) 916, 1648
Psp6I CCWGG 3 cut(s) 55, 397, 880
PspGI CCWGG 3 cut(s) 55, 397, 880
PspN4I GGNNCC 3 cut(s) 569, 768, 999
PspOMI GGGCCC 1 cut(s) 567
PspPI GGNCC 8 cut(s) 23, 28, 48, 59, 84, 126, 567, 568
PstI CTGCAG 2 cut(s) 438, 1504
PstNI CAGNNNCTG 2 cut(s) 1258, 1703
PsuI RGATCY 6 cut(s) 426, 766, 886, 997, 1132, 1736
PvuII CAGCTG 1 cut(s) 406
RigI GGCCGGCC 1 cut(s) 29
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 7 cut(s) 135, 780, 813, 1173, 1410, 1520, 1589
Sau96I GGNCC 8 cut(s) 23, 28, 48, 59, 84, 126, 567, 568
SchI GAGTC 2 cut(s) 1517, 1715
ScrFI CCNGG 6 cut(s) 57, 92, 125, 399, 882, 1030
SduI GDGCHC 4 cut(s) 571, 612, 1466, 1732
SfaNI GCATC 4 cut(s) 722, 846, 1277, 1357
SfcI CTRYAG 4 cut(s) 434, 590, 668, 1500
SmlI CTYRAG 2 cut(s) 1183, 1912
SmoI CTYRAG 2 cut(s) 1183, 1912
Sse9I AATT 9 cut(s) 5, 365, 415, 892, 1155, 1213, 1230, 1312, 1341
SsiI CCGC 2 cut(s) 556, 1795
SspI AATATT 1 cut(s) 76
SspMI CTAG 4 cut(s) 45, 81, 761, 1743
StyD4I CCNGG 6 cut(s) 55, 90, 123, 397, 880, 1028
StyI CCWWGG 3 cut(s) 80, 1742, 1844
TaaI ACNGT 5 cut(s) 312, 811, 853, 1673, 1839
TaiI ACGT 5 cut(s) 40, 919, 1102, 1180, 1651
TasI AATT 9 cut(s) 5, 365, 415, 892, 1155, 1213, 1230, 1312, 1341
TatI WGTACW 1 cut(s) 230
TauI GCSGC 2 cut(s) 558, 1797
TfiI GAWTC 5 cut(s) 971, 1082, 1243, 1255, 1884
Tru1I TTAA 7 cut(s) 135, 780, 813, 1173, 1410, 1520, 1589
Tru9I TTAA 7 cut(s) 135, 780, 813, 1173, 1410, 1520, 1589
TscAI CASTG 3 cut(s) 180, 1143, 1471
TseFI GTSAC 1 cut(s) 1892
Tsp45I GTSAC 1 cut(s) 1892
TspDTI ATGAA 8 cut(s) 17, 433, 461, 891, 1184, 1343, 1509, 1557
TspGWI ACGGA 2 cut(s) 593, 1241
TspRI CASTG 3 cut(s) 180, 1143, 1471
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 5 cut(s) 5, 365, 415, 892, 1213
XmaJI CCTAGG 2 cut(s) 80, 1742
XspI CTAG 4 cut(s) 45, 81, 761, 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.