Rmu_sc0026332.1_g000002

iq-domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026332.1
Physical Location & Seq
Reverse (-)
2789 .. 8299
5511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026332.1_g000002.1.cds

Sequence Viewer

Length: 2052 bp
atgtcgtggatagaggtgacaaacggcatggcacaacccattttaagcgggtttagttgtgtttcgtgcagtgatgaccatactggggttcctgcattcgcactccgtgacccatataaagaccgcagtcgtcacacatcccaccgctcccccaaaacacctctgccgctcagatctacggccacgatcagcccacgcgcccaatggcgcctaggatcccaatttcccccacccgtgagggcactatcacattctgggcttggctcactctcactgaactcatgggaaagggaaagttggtttagggatttggaaggttgttctacttgtacatttgaaaacgggcttcaggattgtgtgttattagccttcctgcaatgggcaaatcaccggctaaatggatcaagactgttctgtttgggaagaagccatccaaacctaatatatcaaaaggaagagagagaatttcaaatgagaaagaggtggtggttgctgccagggcagctgcaactgaatttgttgcagatccacctgcagcttttcatgaaagcacaaacaccacagcttataacaaaggcgtatgatcctgacaaaatcagacaagagcaagctgcaacaaaggcacaggctgcctttaggggttatctggctcgccgcgccttttgggccctcaaaggcataataaggctacaggcacttatccgtgggcacttggtgaggagacaagctgttgctacactttgcagtatgttgggcattgtcaagctacaggcactcagtcgtggacgacaagtcaggcagtctattattgggcttgaagtgcaaaaaagatgccatgttacgcctctggagggcaagctagtggatcctgttggagttaatatctctactcaaatggcaaagctgacggttaatgtttttattagtaagcttcttgctttctcacctactgtgatgcctctgcgtttacattatgaacctggagatccaaattcagtcccaaactggttagaacgttggtcagcaacacatttttggaaaccacttccccaaccaagaaaagttcaagattcaaaatctcagagaacacatcgggatcctcaaacaggcagggtaaagcgaagcacccggaggcttccggctgcaaatgttgaaagtgtctcggtgcaagttacctctgaatctgagaaacccaaacgtatccttaggaaagtttccagccagccagcagatccagtgcaggaaaatccacaaattgagcttgaaaaggttaaacgtaacttgaggaaggttcatactcccatagtagagaattctgtgcagacggaaattgaagctcagaatctcacacagaatctggaaaaggcatcaagtgtttcgggtcataatgtttttgaagggatcacaaataattctgttgagaagatgaagaatgagccaattgttgctctgtccaatctgcctgatgcagaaataactcctgaaccatcagcagcaaaagaggtctttaacttattatccgatgatcaagttgcaatggatttgaagcctttgacagagggcactggtaaagaaataaatacacttagtgatgaagctgcagttgagtcaaacatattaacagagagcagtaaaaaagatgaaaacatccctgttccaagtgtggttttgagccaaaaggaagatttaacaagcaatgacaaccagaaatcaagcaggaaagcttcaactccagccaaacaagaacgttcagagaatgggttgcaaaacagtccaacattgccaagctatatggcagcaactgagtctgcaaaggcaaagctgagggcacaaggatctcctaggcttggactggaggctactgaaaagactgagaaaactaactccactcgccgccattctctgccatcatcagctaatggcaaaatcacttcacagtctccaaggacacagaaacttgttcaatcaggtggaaaaggaggaatcaaaggtgacaaatctctgtcagcctcaagagacgggaaggcaagccaagcagagtggagaagatga

Protein Analysis

683

Amino Acids

76.15

Weight (kDa)

9.88

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AarI CACCTGC 1 cut(s) 540
Acc36I ACCTGC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 207
AccBSI CCGCTC 2 cut(s) 147, 169
AccII CGCG 2 cut(s) 198, 657
AciI CCGC 6 cut(s) 48, 124, 145, 167, 655, 1894
AclI AACGTT 2 cut(s) 1015, 1747
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 4 cut(s) 464, 514, 991, 1312
AcuI CTGAAG 1 cut(s) 332
AcyI GRCGYC 1 cut(s) 208
AdeI CACNNNGTG 3 cut(s) 107, 715, 1589
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 5 cut(s) 85, 379, 851, 1106, 1847
AhdI GACNNNNNGTC 1 cut(s) 791
AjnI CCWGG 2 cut(s) 496, 979
Alw26I GTCTC 4 cut(s) 715, 1165, 1944, 2010
AlwNI CAGNNNCTG 2 cut(s) 1357, 1802
AoxI GGCC 2 cut(s) 180, 666
ApaI GGGCCC 1 cut(s) 670
ApoI RAATTY 4 cut(s) 464, 514, 991, 1312
AspA2I CCTAGG 2 cut(s) 211, 1841
AspLEI GCGC 3 cut(s) 200, 210, 659
AspS9I GGNCC 2 cut(s) 666, 667
AsuC2I CCSGG 1 cut(s) 1129
AsuHPI GGTGA 5 cut(s) 28, 380, 727, 936, 2003
AvrII CCTAGG 2 cut(s) 211, 1841
AxyI CCTNAGG 1 cut(s) 1205
BaeGI GKGCMC 5 cut(s) 244, 670, 711, 1565, 1831
BamHI GGATCC 3 cut(s) 215, 865, 1096
BanI GGYRCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 670
BbvCI CCTCAGC 1 cut(s) 1823
BccI CCATC 3 cut(s) 438, 1495, 1915
BceAI ACGGC 2 cut(s) 40, 195
BciT130I CCWGG 2 cut(s) 498, 981
BciVI GTATCC 1 cut(s) 1211
BclI TGATCA 1 cut(s) 1525
BcnI CCSGG 1 cut(s) 1129
BcoDI GTCTC 4 cut(s) 715, 1165, 1944, 2010
BfaI CTAG 3 cut(s) 212, 860, 1842
BfmI CTRYAG 4 cut(s) 533, 689, 767, 1599
BfoI RGCGCY 1 cut(s) 211
BfuAI ACCTGC 1 cut(s) 540
BfuI GTATCC 1 cut(s) 1211
BglI GCCNNNNNGGC 1 cut(s) 665
BglII AGATCT 1 cut(s) 173
BlnI CCTAGG 2 cut(s) 211, 1841
Bme1390I CCNGG 3 cut(s) 498, 981, 1129
BmeRI GACNNNNNGTC 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 666, 667
BmiI GGNNCC 6 cut(s) 90, 209, 217, 668, 867, 1098
BmrFI CCNGG 3 cut(s) 498, 981, 1129
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 4 cut(s) 821, 945, 1376, 1456
BmuI ACTGGG 1 cut(s) 93
BoxI GACNNNNGTC 1 cut(s) 126
BpmI CTGGAG 4 cut(s) 869, 1002, 1716, 1874
Bpu10I CCTNAGC 1 cut(s) 1823
BpuEI CTTGAG 2 cut(s) 1303, 1996
BpuMI CCSGG 1 cut(s) 1129
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 5 cut(s) 211, 497, 703, 1841, 1943
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 379, 851, 1106, 1847
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 5 cut(s) 88, 1010, 1235, 1570, 1857
Bse21I CCTNAGG 1 cut(s) 1205
Bse3DI GCAATG 4 cut(s) 383, 1542, 1702, 1778
BseBI CCWGG 2 cut(s) 498, 981
BseDI CCNNGG 5 cut(s) 211, 497, 703, 1841, 1943
BseGI GGATG 3 cut(s) 137, 430, 1647
BseLI CCNNNNNNNGG 5 cut(s) 85, 379, 851, 1106, 1847
BseMI GCAATG 4 cut(s) 383, 1542, 1702, 1778
BseMII CTCAG 8 cut(s) 184, 790, 1094, 1176, 1352, 1794, 1814, 1863
BseNI ACTGG 5 cut(s) 88, 1010, 1235, 1570, 1857
BseRI GAGGAG 1 cut(s) 733
BseSI GKGCMC 5 cut(s) 244, 670, 711, 1565, 1831
BsgI GTGCAG 3 cut(s) 88, 1259, 1340
Bsh1236I CGCG 2 cut(s) 198, 657
BshFI GGCC 2 cut(s) 182, 668
BshNI GGYRCC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 391, 1129, 1139
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 5 cut(s) 85, 379, 851, 1106, 1847
BsmAI GTCTC 4 cut(s) 715, 1165, 1944, 2010
BsmBI CGTCTC 1 cut(s) 2010
BsmFI GGGAC 1 cut(s) 983
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 2 cut(s) 182, 668
Bsp120I GGGCCC 1 cut(s) 666
Bsp1286I GDGCHC 5 cut(s) 244, 670, 711, 1565, 1831
Bsp1407I TGTACA 1 cut(s) 329
BspACI CCGC 6 cut(s) 48, 124, 145, 167, 655, 1894
BspANI GGCC 2 cut(s) 182, 668
BspCNI CTCAG 8 cut(s) 183, 789, 1093, 1177, 1351, 1795, 1815, 1864
BspFNI CGCG 2 cut(s) 198, 657
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 6 cut(s) 90, 209, 217, 668, 867, 1098
BspMAI CTGCAG 2 cut(s) 537, 1603
BspMI ACCTGC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 207
BsrBI CCGCTC 2 cut(s) 147, 169
BsrDI GCAATG 4 cut(s) 383, 1542, 1702, 1778
BsrFI RCCGGY 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 329
BsrI ACTGG 5 cut(s) 88, 1010, 1235, 1570, 1857
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 5 cut(s) 211, 497, 703, 1841, 1943
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 3 cut(s) 211, 1841, 1943
Bst2UI CCWGG 2 cut(s) 498, 981
Bst4CI ACNGT 5 cut(s) 411, 910, 952, 1772, 1938
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 329
BstC8I GCNNGC 6 cut(s) 609, 652, 857, 1223, 1227, 2029
BstDSI CCRYGG 1 cut(s) 703
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 3 cut(s) 137, 430, 1647
BstFNI CGCG 2 cut(s) 198, 657
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 3 cut(s) 200, 210, 659
BstMAI GTCTC 4 cut(s) 715, 1165, 1944, 2010
BstMWI GCNNNNNNNGC 8 cut(s) 499, 502, 620, 629, 656, 665, 820, 2033
BstNI CCWGG 2 cut(s) 498, 981
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 3 cut(s) 496, 979, 1127
BstSFI CTRYAG 4 cut(s) 533, 689, 767, 1599
BstSLI GKGCMC 5 cut(s) 244, 670, 711, 1565, 1831
BstUI CGCG 2 cut(s) 198, 657
BstX2I RGATCY 8 cut(s) 173, 215, 525, 865, 985, 1096, 1231, 1835
BstYI RGATCY 8 cut(s) 173, 215, 525, 865, 985, 1096, 1231, 1835
Bsu36I CCTNAGG 1 cut(s) 1205
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 2 cut(s) 182, 668
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 3 cut(s) 137, 430, 1647
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 4 cut(s) 76, 272, 1242, 1563
BveI ACCTGC 1 cut(s) 540
Cac8I GCNNGC 6 cut(s) 609, 652, 857, 1223, 1227, 2029
CaiI CAGNNNCTG 2 cut(s) 1357, 1802
CciI TCATGA 1 cut(s) 543
CfoI GCGC 3 cut(s) 200, 210, 659
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 666, 667
Csp6I GTAC 1 cut(s) 330
CspCI CAANNNNNGTGG 1 cut(s) 2021
CviAII CATG 4 cut(s) 28, 282, 544, 836
CviQI GTAC 1 cut(s) 330
DinI GGCGCC 1 cut(s) 209
DraIII CACNNNGTG 3 cut(s) 107, 715, 1589
DriI GACNNNNNGTC 1 cut(s) 791
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 450
Eam1105I GACNNNNNGTC 1 cut(s) 791
EarI CTCTTC 1 cut(s) 450
Eco130I CCWWGG 3 cut(s) 211, 1841, 1943
Eco24I GRGCYC 1 cut(s) 670
Eco57I CTGAAG 1 cut(s) 332
Eco81I CCTNAGG 1 cut(s) 1205
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoO109I RGGNCCY 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 496, 979
EcoT14I CCWWGG 3 cut(s) 211, 1841, 1943
EcoT38I GRGCYC 1 cut(s) 670
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
ErhI CCWWGG 3 cut(s) 211, 1841, 1943
Esp3I CGTCTC 1 cut(s) 2010
FaeI CATG 4 cut(s) 31, 285, 547, 839
FaqI GGGAC 1 cut(s) 983
FatI CATG 4 cut(s) 27, 281, 543, 835
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 1525
FokI GGATG 3 cut(s) 124, 417, 1634
FriOI GRGCYC 1 cut(s) 670
FspBI CTAG 3 cut(s) 212, 860, 1842
GlaI GCGC 3 cut(s) 199, 209, 658
GsuI CTGGAG 4 cut(s) 869, 1002, 1716, 1874
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 2 cut(s) 182, 668
HapII CCGG 3 cut(s) 391, 1129, 1139
HhaI GCGC 3 cut(s) 200, 210, 659
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 4 cut(s) 31, 285, 547, 839
Hin6I GCGC 3 cut(s) 198, 208, 657
HinP1I GCGC 3 cut(s) 198, 208, 657
HindIII AAGCTT 2 cut(s) 929, 1722
HinfI GANTC 7 cut(s) 1070, 1181, 1342, 1354, 1607, 1805, 1983
HpaII CCGG 3 cut(s) 391, 1129, 1139
HphI GGTGA 5 cut(s) 28, 380, 727, 936, 2003
Hpy166II GTNNAC 2 cut(s) 785, 968
Hpy188I TCNGA 8 cut(s) 173, 599, 1083, 1180, 1186, 1341, 1522, 1753
Hpy8I GTNNAC 2 cut(s) 785, 968
HpyAV CCTTC 5 cut(s) 308, 379, 1282, 1391, 2017
HpyCH4III ACNGT 5 cut(s) 411, 910, 952, 1772, 1938
HpyCH4IV ACGT 4 cut(s) 1015, 1198, 1276, 1747
HpyF10VI GCNNNNNNNGC 8 cut(s) 499, 502, 620, 629, 656, 665, 820, 2033
HpySE526I ACGT 4 cut(s) 1015, 1198, 1276, 1747
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 4 cut(s) 31, 285, 547, 839
HspAI GCGC 3 cut(s) 198, 208, 657
KasI GGCGCC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 1525
LmnI GCTCC 1 cut(s) 152
LweI GCATC 4 cut(s) 821, 945, 1376, 1456
MaeI CTAG 3 cut(s) 212, 860, 1842
MaeII ACGT 4 cut(s) 1015, 1198, 1276, 1747
MaeIII GTNAC 7 cut(s) 16, 107, 131, 838, 1171, 1277, 1991
MbiI CCGCTC 2 cut(s) 147, 169
MboII GAAGA 5 cut(s) 435, 467, 1435, 1441, 1694
MfeI CAATTG 1 cut(s) 1440
MflI RGATCY 8 cut(s) 173, 215, 525, 865, 985, 1096, 1231, 1835
MhlI GDGCHC 5 cut(s) 244, 670, 711, 1565, 1831
MluCI AATT 9 cut(s) 221, 464, 514, 991, 1254, 1312, 1329, 1411, 1440
Mly113I GGCGCC 1 cut(s) 208
MlyI GAGTC 2 cut(s) 1616, 1814
MmeI TCCRAC 2 cut(s) 853, 1799
MseI TTAA 7 cut(s) 44, 879, 912, 1272, 1509, 1619, 1688
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 3 cut(s) 391, 1129, 1139
MspR9I CCNGG 3 cut(s) 498, 981, 1129
MunI CAATTG 1 cut(s) 1440
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 2 cut(s) 498, 981
MvnI CGCG 2 cut(s) 198, 657
MwoI GCNNNNNNNGC 8 cut(s) 499, 502, 620, 629, 656, 665, 820, 2033
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 1 cut(s) 1129
NlaIII CATG 4 cut(s) 31, 285, 547, 839
NlaIV GGNNCC 6 cut(s) 90, 209, 217, 668, 867, 1098
NmuCI GTSAC 4 cut(s) 16, 107, 131, 1991
PagI TCATGA 1 cut(s) 543
PaqCI CACCTGC 1 cut(s) 540
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 5 cut(s) 1070, 1181, 1342, 1354, 1983
PleI GAGTC 2 cut(s) 1615, 1813
PluTI GGCGCC 1 cut(s) 211
PpsI GAGTC 2 cut(s) 1615, 1813
PshAI GACNNNNGTC 1 cut(s) 126
PsiI TTATAA 1 cut(s) 569
Psp1406I AACGTT 2 cut(s) 1015, 1747
Psp6I CCWGG 2 cut(s) 496, 979
PspGI CCWGG 2 cut(s) 496, 979
PspN4I GGNNCC 6 cut(s) 90, 209, 217, 668, 867, 1098
PspOMI GGGCCC 1 cut(s) 666
PspPI GGNCC 2 cut(s) 666, 667
PstI CTGCAG 2 cut(s) 537, 1603
PstNI CAGNNNCTG 2 cut(s) 1357, 1802
PsuI RGATCY 8 cut(s) 173, 215, 525, 865, 985, 1096, 1231, 1835
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
SaqAI TTAA 7 cut(s) 44, 879, 912, 1272, 1509, 1619, 1688
Sau96I GGNCC 2 cut(s) 666, 667
SchI GAGTC 2 cut(s) 1616, 1814
ScrFI CCNGG 3 cut(s) 498, 981, 1129
SduI GDGCHC 5 cut(s) 244, 670, 711, 1565, 1831
SfaNI GCATC 4 cut(s) 821, 945, 1376, 1456
SfcI CTRYAG 4 cut(s) 533, 689, 767, 1599
SfoI GGCGCC 1 cut(s) 209
SmlI CTYRAG 2 cut(s) 1282, 2011
SmoI CTYRAG 2 cut(s) 1282, 2011
Sse9I AATT 9 cut(s) 221, 464, 514, 991, 1254, 1312, 1329, 1411, 1440
SsiI CCGC 6 cut(s) 48, 124, 145, 167, 655, 1894
SspDI GGCGCC 1 cut(s) 207
SspMI CTAG 3 cut(s) 212, 860, 1842
StyD4I CCNGG 3 cut(s) 496, 979, 1127
StyI CCWWGG 3 cut(s) 211, 1841, 1943
TaaI ACNGT 5 cut(s) 411, 910, 952, 1772, 1938
TaiI ACGT 4 cut(s) 1018, 1201, 1279, 1750
TasI AATT 9 cut(s) 221, 464, 514, 991, 1254, 1312, 1329, 1411, 1440
TatI WGTACW 1 cut(s) 329
TauI GCSGC 3 cut(s) 169, 657, 1896
TfiI GAWTC 5 cut(s) 1070, 1181, 1342, 1354, 1983
Tru1I TTAA 7 cut(s) 44, 879, 912, 1272, 1509, 1619, 1688
Tru9I TTAA 7 cut(s) 44, 879, 912, 1272, 1509, 1619, 1688
TscAI CASTG 4 cut(s) 76, 279, 1242, 1570
TseFI GTSAC 4 cut(s) 16, 107, 131, 1991
Tsp45I GTSAC 4 cut(s) 16, 107, 131, 1991
TspDTI ATGAA 7 cut(s) 532, 560, 990, 1283, 1442, 1608, 1656
TspGWI ACGGA 3 cut(s) 95, 692, 1340
TspRI CASTG 4 cut(s) 76, 279, 1242, 1570
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 4 cut(s) 464, 514, 991, 1312
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmaJI CCTAGG 2 cut(s) 211, 1841
XspI CTAG 3 cut(s) 212, 860, 1842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.