FvH4_5g19090

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002656
Physical Location & Seq
Reverse (-)
10998957 .. 11010622
11666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19090.t1

Sequence Viewer

Length: 6924 bp
ATGGATTATGATGACAGTGATTTTCAAAGCCAGAATCTCCATTTAGCTGGTGAAGGGAGCACTGATTGTCCTCCAGTTTTACAGCCATATTGTCTTCCCAAGTTTGATTTTGATGAGGGGCATTTGAGGTTTGATAGTTTGGTTGAAACTGAAGTTTTTCTTGGCATTGAGAGTAGTGAAGCTAACAACTGGATTGAGGATTTCTCTCGTGGGAGTAGTGGGATAGAGTTTAGTCCAAGTGCGGTAGAATCGTGCTCTATATCAAGGCGAAACAATGTTTGGTCTGAGGCCACATCCTCAGAATCTGTTGAAATGCTATTAAAATCTGTTGGGCAGGAAGAAATAATTCCCGCTCAGACTATCTTTGAGGAATCAGATGCGTGTAAGGAAGTGGGCTGCATAAAGCAAATGGAGCCGAATTTGAAGAATGATGATAACATTCTCACTGAAATAGGGGATGTTAGAGATCTAGAACATTCTACTTCACTGCCAGATGAGATTGCTGGAAACCTTTCTGGCGTACAGGATGTTGGAGATCAGCCTCGACTTGAGGATGCTTCACAAACTCGGGAAGTTGAATTACCGGTTGATGGAAATTCAGTTGTTTTGGATCCAAATTCTATCGGTGATCAGGACAGGCTGCCTGTAACTAAAGGGTGTCTGTCTGATGAGAAAGGAAATGATGTGAATAATATGGAAATTGATAATTTGTTTGATTATCCTCCAGATAATAAAATGCATGAAGATTCATCTGCTTCAGAGATGCAAGTTGATATTGTGATGACTTCTGTGCAAAGTTTTGTGACAAGTAGTGATGAGTTAAATAATCAAGATGCTCCACATCATATAATGGATATTAGTGAAGAGAATCCAAGCGGTCATGTGGCAAGCATAGATATTCAATGTAGTAATGATTTGGACAAACCTCATTGTCCAGCATCAGAGGTGGACTGTGTAAAGGAAGAAATTGCAAATGAAGATACTGTTACTGATGTGCAGGAAGCAGCTAATGTTATGATGCAAGGGGATTCTATTCTACCTACAATGGGTGGATGCAGTGAGAGTGAATATCCTGGAGTTCTTACTGAGACCAATAAATGTGAAGACATGGTAGTGCTTAAGGACAGTGATGTTGATTGTGATCAATCTACAATGACCAACACAAATGAGCTTAGGAACAACCTTGGCGAAGTTTCTTCCAGTCCTGATCATATCCTGAAAGGAGAATCTGACTTACATACAGTGGACAGATGCACTGACAAGGAACAACCTGGAGTTCTTGATGAGACCAAGAAATGTGAAGATGTTATCTCTTTTAAAGATACAGATGCTGATGGAGTTTCATCTAATTTGAACCAAAATGACAGTGGTTATGGCTCTGAGCTTCAGAACAGCAATGCTGGAGTTTTGTCTGGTTTAGATCCTAGCCTGAAAGGGGATTCTAGCTTGCATACAGTGGATGTATGCTGTGACAAGGAGTCCCCTGAAGTTCCTGCTGATACCGACAATAGTGAACATGTGGTCCCGTTGAAAGATACAGATATTGGTGGTGATCAATCTAAATGTCATGCACATAAGTTATCTCCAATGGCCTACGGGAGTGACACGGGGCATGCAGTTGAACTTGGCAACAGCATTTCTTCCTGTGTAAGCCCTATATTGACAGCGGATAATGAGTTACATACAGTGGATGCAAGCAGTCACAGGAAATGCTCTGATGTTCCTGCCGAGACCACTAAATCTGAAGACATGGTGTTGTCAAAAGGCACAGATACTGCCGGTGATCATTCTAACATGAGCCCACATGTTTTATCACCTGTAGCCTACAAAAGTGATACTGGGTGTCCAGATGAGGTCGGGAACAGCAATTCTGGAATTCCTTCCAGTCTAGATCCTAGTTTGAAGGTGGATTCTGGAAAGAATAGCGAGGAGGATGGAATGAAATGTGGTGGCCAATCCCTTGATAGTGAGAGTTTGGTCAGAAAGTCTGAGGCTTCTATGACAGTCATTGAGGAAACTGATGTTTTTAAAGGAAAAAGTGATGAGATTCGGGAAGTTTGTTCTTCAGCTGAAATGCCTAGTGAACTGCATGTGACTGGAGCTTCTAAAAGTCCTCGTGATGCTGTTGGAGTTTCTGCTGAGGAATTAAATGTATCGTCTTATAATCTGGGAGAGAATACAGAAAGGTGTTCTGATAATGAAGTTTACAAAGAAGGCATATCTGGAAAATGTGACCTGGACCTCTCTTCCATTGAAAAGGATACTTCAAAATCGATCATTGAATCTAATATTATGGATTTGGAGCTTGTCGGATCTGTTGGTAAGGGAGATGGGTTGTCAACGATTCTTGAAGATTCTGCAGAGAAAGATGTGATTCCAACACAAAATCATGATGTTGATGGCAGTGCATCAGTGGCTTCTGAGAATTTTGCAACCACACATATTCATAATGTATCAGTGGTTCCTGCAGCACCTTCTCCTGCTATGGGATCACACTCGGACAATAAAGAAGAAACTGCAATTGAAATATCCAAAGATGTAAGTTTGTCATGTATTGTGTCATCACCTATGGTAGAATCTGGCCGAGCCCCTGCTTGTGAAGCTGAAAAAGGTGCTTCCTGTGATTCTGCTGGGCAACTATTATGCAAGACGCTTGATCAGTCTCTGCCAACTTCAATTGGTTGCTATACTGAAAGCCAAATTGAACCTGGAGCAGCAGTTGCGAACGAGATTAGTAAGAGAAGCACAACGGATGTGGAAGTAAAACGAGGTGATGATTCTGCAACTCATGATGGAGCAACAACAGAAAACAAATTTACCACAGAAGACAAGTCTGAAAAGTCATCAGAAAATGCTAAAGGTGATGCTTTTGGAAATTTCGAAGGTCCAATGCTTTCTGCTTGTTTGCCTGAATCTTGTTCCAAGTCTGCTGATCCCGGCCAGCCTGGTTCTGGTTTTCCCAAAGCTCTTAGAACGACCGAGATTCCTGTGACAAAACATGGGATAGGCAATATCATGGAGTCAACAAATCAGAATGCCGCAAATACTGATGTAGTTGGGGATAGCAGCAAACGTTCTTCTAATTCCTCAAATCCAACTGGAAATGATGTCTCCAAAGTTCAGAGATATGGCACCTCAGATGTCACTTCCTTTGCAGATTTGCCTATAGGGTTTGCTGCCAACATCTCACAGCCCTTGCCTGCTACTTCAGCTCCCAAAATTGTAGAGGGGTCTCAAACAAATTATGGCTCAGGCCAGATAGATGCAAAGATGTCACAAGTAATTTCTCATGGAGGTGATGGAGAGATTGCAAGTGGTGGTTCTAAAGGTACCACAGAACGGAAAAGAAGGCGAGCGTCCACTAAGGGAGCAGGCAAAGAGAGTGCTAAAAAGGGAACTGCGAAAGCAACAACTCCTACAAAACAAGTAGAAAGGGGAGACATATCTAGCAGTGTGTCCCTTGGGAAATCTGGAATTTTCCAGTTTGCACAGCCTAATGAGATACAGTACTATGGGCTTGTGGATAGTGGCTCAAAAACTTATTCCATTCTTACTAGTTCAACATCTAGTCTGCCAGATCTGAATTCTTCTGCCCCAGCATCTCTAGTATTTCAACAGCCTTTCACAGATCTGCAGCAAGTGCAATTACGTGCTCAGATATTTGTTTATGGAGCTTTGATTCAAGGAACAGCACCTGAAGAAGGTTATATGGTGTCAGCATATGGAGGACCTGATGGTGGAAGGAGTATCTGGGAGAATGCGTGGCGTATGTGTGTAGAGAGGCTGCACAGTCAAAAATCCACTCCTAGTAATCCAGAAACCCCTTTGCAGTCATCCTCTGACTTGAGATTTACTGGTGGTAGGGTTCTTGATCAAGCTGTTAAACAAAGCGCATTCCAGGGTAAAGTTATCGCCTCACCTGCTGGTCGAGCCAGCACCAAGGGTATTCCACCTCCTGCGAGTCCCATGATACCAATTTCATCACCACTTTGGAGTATTCCTACCCCTGGTTGTGAGGCTCCTCAATATGGTGTGCTGCCAAGAGGTTCGCTAATGGAGTATCAGCAGGTCCATACTCCACTGCTTCCTTTCCAAACATCACCCATAAGGAACATTGTTGGACAAAGTTCTTCGTGGATGTCTCAGTCCTCGTTTCGGGGTCCCTGGGTCGCTTCCCCACAGACATCTGCAGCTGAAACCAATGTTCGTTTCTCAGCATTTCCTAGTACAGAGTCGGTTCTGCTGACTCCTGTTAAAGAAACAACTTCCTCACAAGTATCCAGTATAAAGCATGCCTCCTCGGTTGTTACTGGTCAAATTGGGGGTATAACCAGTGTTTTTGCAGGGATTTCTCCACTACTTGACCCAAAGAAGGTAGGAGTAGCATCACCTGGCGAGCCATCTTCTCAACCAAAGTCTAGAAAAAGAAAAAAGGTGTCAAATTCTAAGGAACTTGGTCAGATTAGTTTGCAGCCTCAATCTCAACCTGAGTCAGCTTTAGCTCTTGCTGTTACTAGTAGTGTACCTACATCTGTTGTGGTCACCACCCCAAGTACCTATGTGCCTAACACCATGCCAGAAAACTTGGCTGCGTCAGTATCCTCCGATCACCTCAAGAAAGCAGATCTTGGTTTGGAGCAGAGGGCAATTTTATCAAAAGATACTCTTAGTAAAGCTAAGGAGGCTAGGCAACAAGCAGAGGAAGCTTCTGCTCATGCTGCTGCAGCTGTTGGTCACAGTCAGGAAATATGGAGTCAGTTGGACAAGCAGAAACATTCCAGATTGACATCAGATGCTGAAGCCAAATTAGCTTCTGCCGCTGTTGCTGTAGCTGCCGCCGCCGCTGTTGCAAAAGCTGCAGCTGCAGCTGCCAATGTTGCAGCAAATGCTGCAATGCAAGCAGTACTGATGGCTGAGGAAGCCTATGGGAATCAAAGCGAATGTTTGATGGATTTGAGTACTGATGCAATCAATGCACTGGGATTGGCTGCTGCAGGAACAGTTTTTAGGGCGGAGGATGGAACAAACAGTTCAAGTTCAATCCTTAGTGCTGCTAGGGAGGCTGCTAGAAGGAGGGTTGAAGCTGCATCTTCAGCCTCAAAGCGAGCTGAAAATATGGATGCCATAGTAAAAGCTGCTGAGCTAGCAGCAGAAGCAGTATCCCATGCTGGAACAGTTGTTGCCATGGGTGATCCTTGGCCATTGAGCGAGTTAGCAAAAGCTGGTCCTGAGGGTTATTGGAAAGCACCCCTAGTATCGTCAGAGTTAGTTAAGAAATCAAATGATGGAATGAGAGAACAATTGAATTTTTCCACTCCTGGATCAGAAGATTCAGATAAGGAGGAAACACAGATATCTGTTGCTAAGAAATCACCTATAGTCAGTGAAAGGGTTACTGAGATTACAAAGTCTTCTTTGCCCACTTCTGGGAAAGATAGCATTGTGGAGGGTTCTCAAGTAGAGGTTTTCAAAGAAGGGGGTGGATTTGCAGTGGGCTGGTTCACAGCTACTGTACTGAGTTTACAAGATGGCAAAGCTTGTGTATGTTACACTGAGCTTCAGTCAGATGAAGGCTCAGGAAAACTACAGGAATGGGTGGCACTTGACAGTGAAGAAGATAAACCACCCAAAATACGTGTTGCTCGCCTTCTTACCCCCTCCCTTGAAGGGACAAGAAAAAGGCGGAGGGAAGCAATGGCAGATTATGCTTGGTCTGTTGGAGACAAGGTTGACGCGTGGATACAAAACAGCTGGTGGGAAGGAGTTGTGACTGAAAAAAACAAGAAAGACGAGACGATACTTAAAGTTCACTTTCCAGCTCAAGGGGAAACGTCACATGTTAAAGCTTGGCATCTTCGGCCTTCTCTGATTTGGAAGGATGGGAAATGGGTTGAATGGTCCAGTCTGCAGAACAACGGCTCATCCATGGAGGATGGTTTGCCGCTGGAGAAGCGAATCAAATTGGGCAGTCCTGCAGTGGAAGGAAAAGGGAAGGATAAGACCTTAAAAAGCAATGGTCTTCATTCAGGAAAACCTGAAGAGCCAAGGTTGCTGAATTTGTCTGCAAATGAAAAGGTATTTAATATAGGCAACAATTCCAGGATTGAAAATAAGCTTGATGGAGTCCGAACAAATCGGACAGGGTTGCAGAAGGAAGGATCAGTAAAATTTGGTATTCCGAAGCCCAAAAGAAAGTTTATGGAAGTTAGCAAGCATTATGTGATGAATCAGACTAGTAAGGTTAACGAGTCCAATGATTCAGTGAAGTTTGCGAAATATTTGATGCCACAAACATCAGGTTTCCGTGCATTGAAAAATACATCTAAGTTTGATTCAAAGAACAAAGAGGGGGCTGATAACAAGCTAAGGGGTTTTAGATCTGAAAAGCAGCGAAATATATCGGATAAAACAGTTCCTCCGAGGGACAACTTGTCAACAGATTTAGTTTCTGGTGCTGATGGCTCTAGTCAGTTGGACCATACAAGAAAGATCAAGGACTCTGTAAGACAAGCAGAGGGTTTATCCGGAAAGCGCAACATATTTGAGACAGGATCAAGTTATAGCTCAGATGGAAGAGCACAGGGAGCATCCATGTTTTCTTCACGAACACCCTCAGATTTTCCTTCATCCAAGAAGGTAGCCACTACAAGTGCTAAATCTGAACGAGGAAATAAAGGAAATTTTGCACCAGCTGTTGGGAAGTTGGGTAAAATTGAGGAGAACAAAGGTATGAGTAGTAATCCTGTAAAGTCAACTTCTGAAGTTGTCGAGCCCCGTAGATCAAATCGCCGAATTCAGCCAACATCAAGACTATTAGAAGGACTGCAAAGTTCGTTGAGCATCTCTAAGATTCCTTCCGTTTCACATGACAAGGGTCCAAGAAGTCAGAATAGAAATGCTTCTAGAGGTGGTAACCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

2308

Amino Acids

245.89

Weight (kDa)

4.98

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 1817 - 1869 1.4e-10 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2163
AarI CACCTGC 1 cut(s) 3928
Acc36I ACCTGC 2 cut(s) 3928, 4057
Acc65I GGTACC 1 cut(s) 3329
AccB1I GGYRCC 2 cut(s) 3131, 3329
AccB7I CCANNNNNTGG 1 cut(s) 6695
AccBSI CCGCTC 1 cut(s) 353
AccII CGCG 1 cut(s) 5735
AccIII TCCGGA 1 cut(s) 6524
AclI AACGTT 1 cut(s) 3073
AcoI YGGCCR 4 cut(s) 1951, 2581, 2938, 5198
AfaI GTAC 9 cut(s) 522, 3331, 3509, 4228, 4524, 4555, 4905, 4960, 5514
AflII CTTAAG 1 cut(s) 1118
AflIII ACRYGT 5 cut(s) 1516, 1804, 5635, 5733, 5836
AgeI ACCGGT 1 cut(s) 583
AhdI GACNNNNNGTC 2 cut(s) 1477, 6430
AhlI ACTAGT 3 cut(s) 3554, 4514, 6233
AjuI GAANNNNNNNTTGG 6 cut(s) 144, 176, 262, 294, 4193, 4225
AloI GAACNNNNNNTCC 2 cut(s) 1506, 1538
Alw21I GWGCWC 4 cut(s) 62, 257, 3655, 6580
AlwNI CAGNNNCTG 7 cut(s) 305, 1331, 1775, 2665, 3695, 4796, 5510
Ama87I CYCGRG 1 cut(s) 567
Aor13HI TCCGGA 1 cut(s) 6524
AoxI GGCC 8 cut(s) 288, 1590, 1951, 2581, 2938, 3253, 5198, 5858
AsiGI ACCGGT 1 cut(s) 583
Asp700I GAANNNNTTC 5 cut(s) 156, 345, 511, 1879, 6898
Asp718I GGTACC 1 cut(s) 3329
AspLEI GCGC 2 cut(s) 3893, 6534
AsuC2I CCSGG 1 cut(s) 2937
AsuII TTCGAA 1 cut(s) 2880
AsuNHI GCTAGC 1 cut(s) 5143
AvaI CYCGRG 1 cut(s) 567
AxyI CCTNAGG 1 cut(s) 5229
BalI TGGCCA 2 cut(s) 1953, 5200
BamHI GGATCC 1 cut(s) 610
BanI GGYRCC 2 cut(s) 3131, 3329
BanII GRGCYC 3 cut(s) 1802, 2590, 6774
BarI GAAGNNNNNNTAC 2 cut(s) 564, 596
BauI CACGAG 2 cut(s) 207, 2115
BbsI GAAGAC 6 cut(s) 86, 1110, 1752, 2832, 5403, 6011
Bbv12I GWGCWC 4 cut(s) 62, 257, 3655, 6580
BbvCI CCTCAGC 2 cut(s) 2139, 4914
BceAI ACGGC 1 cut(s) 5932
BciVI GTATCC 5 cut(s) 2254, 4288, 4609, 5170, 5733
BclI TGATCA 7 cut(s) 628, 1141, 1207, 1552, 1783, 2656, 3871
BcnI CCSGG 1 cut(s) 2937
BcuI ACTAGT 3 cut(s) 3554, 4514, 6233
BfrI CTTAAG 1 cut(s) 1118
BfuAI ACCTGC 2 cut(s) 3928, 4057
BfuI GTATCC 5 cut(s) 2254, 4288, 4609, 5170, 5733
BglII AGATCT 5 cut(s) 466, 3577, 3628, 4624, 6377
BlpI GCTNAGC 1 cut(s) 5139
BmcAI AGTACT 3 cut(s) 3509, 4905, 4960
BmeRI GACNNNNNGTC 2 cut(s) 1477, 6430
BmeT110I CYCGRG 1 cut(s) 567
BmrI ACTGGG 2 cut(s) 1848, 4988
BmtI GCTAGC 1 cut(s) 5147
BmuI ACTGGG 2 cut(s) 1848, 4988
BoxI GACNNNNGTC 1 cut(s) 6873
BpiI GAAGAC 6 cut(s) 86, 1110, 1752, 2832, 5403, 6011
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 8 cut(s) 57, 708, 1095, 1293, 1422, 2118, 2730, 5966
Bpu10I CCTNAGC 7 cut(s) 1172, 2139, 3250, 4677, 4914, 5575, 6365
Bpu1102I GCTNAGC 1 cut(s) 5139
Bpu14I TTCGAA 1 cut(s) 2880
BpuEI CTTGAG 5 cut(s) 569, 3865, 4598, 5439, 5805
BpuMI CCSGG 1 cut(s) 2937
Bsa29I ATCGAT 1 cut(s) 2273
BsaAI YACGTR 2 cut(s) 3650, 5636
BsaBI GATNNNNATC 2 cut(s) 1140, 4786
BsaI GGTCTC 4 cut(s) 1082, 1280, 1724, 3237
BsaWI WCCGGW 2 cut(s) 583, 6524
Bse118I RCCGGY 2 cut(s) 583, 1778
Bse21I CCTNAGG 1 cut(s) 5229
Bse3DI GCAATG 4 cut(s) 1402, 4899, 5700, 6019
Bse8I GATNNNNATC 2 cut(s) 1140, 4786
BseAI TCCGGA 1 cut(s) 6524
BseCI ATCGAT 1 cut(s) 2273
BseJI GATNNNNATC 2 cut(s) 1140, 4786
BseMI GCAATG 4 cut(s) 1402, 4899, 5700, 6019
BseRI GAGGAG 4 cut(s) 1943, 4011, 4288, 6731
BseYI CCCAGC 2 cut(s) 2630, 3595
BsgI GTGCAG 2 cut(s) 1016, 3770
Bsh1236I CGCG 1 cut(s) 5735
Bsh1285I CGRYCG 1 cut(s) 2979
BshFI GGCC 8 cut(s) 290, 1592, 1953, 2583, 2940, 3255, 5200, 5860
BshNI GGYRCC 2 cut(s) 3131, 3329
BshTI ACCGGT 1 cut(s) 583
BshVI ATCGAT 1 cut(s) 2273
BsiEI CGRYCG 1 cut(s) 2979
BsiHKAI GWGCWC 4 cut(s) 62, 257, 3655, 6580
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 4 cut(s) 584, 1779, 2937, 6525
BslFI GGGAC 7 cut(s) 1465, 1508, 3442, 3948, 4146, 5683, 6437
BsmBI CGTCTC 1 cut(s) 5786
BsmFI GGGAC 7 cut(s) 1465, 1508, 3442, 3948, 4146, 5683, 6437
BsmI GAATGC 3 cut(s) 3040, 3763, 3893
BsnI GGCC 8 cut(s) 290, 1592, 1953, 2583, 2940, 3255, 5200, 5860
Bso31I GGTCTC 4 cut(s) 1082, 1280, 1724, 3237
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 2880
Bsp1286I GDGCHC 7 cut(s) 62, 257, 1802, 2590, 3655, 6580, 6774
Bsp13I TCCGGA 1 cut(s) 6524
Bsp1720I GCTNAGC 1 cut(s) 5139
Bsp19I CCATGG 2 cut(s) 5184, 5925
BspANI GGCC 8 cut(s) 290, 1592, 1953, 2583, 2940, 3255, 5200, 5860
BspDI ATCGAT 1 cut(s) 2273
BspEI TCCGGA 1 cut(s) 6524
BspFNI CGCG 1 cut(s) 5735
BspHI TCATGA 2 cut(s) 2389, 2788
BspMI ACCTGC 2 cut(s) 3928, 4057
BspOI GCTAGC 1 cut(s) 5147
BspQI GCTCTTC 2 cut(s) 6033, 6568
BspT104I TTCGAA 1 cut(s) 2880
BspT107I GGYRCC 2 cut(s) 3131, 3329
BspTI CTTAAG 1 cut(s) 1118
BspTNI GGTCTC 4 cut(s) 1082, 1280, 1724, 3237
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 4 cut(s) 1402, 4899, 5700, 6019
BsrFI RCCGGY 2 cut(s) 583, 1778
BssAI RCCGGY 2 cut(s) 583, 1778
BssSI CACGAG 2 cut(s) 207, 2115
BssT1I CCWWGG 7 cut(s) 1183, 3460, 3939, 5184, 5195, 5925, 6044
Bst2BI CACGAG 2 cut(s) 207, 2115
Bst6I CTCTTC 4 cut(s) 858, 2251, 6033, 6568
BstAFI CTTAAG 1 cut(s) 1118
BstAPI GCANNNNNTGC 7 cut(s) 2720, 3640, 4856, 4886, 4889, 4973, 5705
BstBAI YACGTR 2 cut(s) 3650, 5636
BstBI TTCGAA 1 cut(s) 2880
BstDSI CCRYGG 2 cut(s) 5184, 5925
BstEII GGTNACC 2 cut(s) 4540, 6911
BstENI CCTNNNNNAGG 1 cut(s) 3699
BstFNI CGCG 1 cut(s) 5735
BstHHI GCGC 2 cut(s) 3893, 6534
BstMCI CGRYCG 1 cut(s) 2979
BstNSI RCATGY 6 cut(s) 1520, 1616, 1808, 2093, 4295, 5840
BstPAI GACNNNNGTC 1 cut(s) 6873
BstPI GGTNACC 2 cut(s) 4540, 6911
BstUI CGCG 1 cut(s) 5735
BstV2I GAAGAC 6 cut(s) 86, 1110, 1752, 2832, 5403, 6011
BstX2I RGATCY 9 cut(s) 466, 610, 1420, 1891, 2312, 3577, 3628, 4624, 6377
BstXI CCANNNNNNTGG 1 cut(s) 47
BstYI RGATCY 9 cut(s) 466, 610, 1420, 1891, 2312, 3577, 3628, 4624, 6377
Bsu15I ATCGAT 1 cut(s) 2273
Bsu36I CCTNAGG 1 cut(s) 5229
BsuI GTATCC 5 cut(s) 2254, 4288, 4609, 5170, 5733
BsuRI GGCC 8 cut(s) 290, 1592, 1953, 2583, 2940, 3255, 5200, 5860
BsuTUI ATCGAT 1 cut(s) 2273
BtgI CCRYGG 2 cut(s) 5184, 5925
BtsI GCAGTG 7 cut(s) 485, 1063, 2410, 3457, 4079, 5496, 5982
BveI ACCTGC 2 cut(s) 3928, 4057
CaiI CAGNNNCTG 7 cut(s) 305, 1331, 1775, 2665, 3695, 4796, 5510
CciI TCATGA 2 cut(s) 2389, 2788
CfoI GCGC 2 cut(s) 3893, 6534
Cfr10I RCCGGY 2 cut(s) 583, 1778
ClaI ATCGAT 1 cut(s) 2273
CseI GACGC 4 cut(s) 2659, 3345, 4581, 5741
Csp6I GTAC 9 cut(s) 521, 3330, 3508, 4227, 4523, 4554, 4904, 4959, 5513
CspAI ACCGGT 1 cut(s) 583
CspCI CAANNNNNGTGG 2 cut(s) 2736, 2771
CviQI GTAC 9 cut(s) 521, 3330, 3508, 4227, 4523, 4554, 4904, 4959, 5513
DraI TTTAAA 2 cut(s) 1318, 2029
DriI GACNNNNNGTC 2 cut(s) 1477, 6430
EaeI YGGCCR 4 cut(s) 1951, 2581, 2938, 5198
Eam1104I CTCTTC 4 cut(s) 858, 2251, 6033, 6568
Eam1105I GACNNNNNGTC 2 cut(s) 1477, 6430
EarI CTCTTC 4 cut(s) 858, 2251, 6033, 6568
EciI GGCGGA 2 cut(s) 5027, 5698
Eco130I CCWWGG 7 cut(s) 1183, 3460, 3939, 5184, 5195, 5925, 6044
Eco24I GRGCYC 3 cut(s) 1802, 2590, 6774
Eco31I GGTCTC 4 cut(s) 1082, 1280, 1724, 3237
Eco32I GATATC 1 cut(s) 5355
Eco81I CCTNAGG 1 cut(s) 5229
Eco88I CYCGRG 1 cut(s) 567
Eco91I GGTNACC 2 cut(s) 4540, 6911
EcoNI CCTNNNNNAGG 1 cut(s) 3699
EcoO109I RGGNCCY 2 cut(s) 3728, 4160
EcoO65I GGTNACC 2 cut(s) 4540, 6911
EcoRI GAATTC 3 cut(s) 1875, 3583, 6792
EcoRV GATATC 1 cut(s) 5355
EcoT14I CCWWGG 7 cut(s) 1183, 3460, 3939, 5184, 5195, 5925, 6044
EcoT22I ATGCAT 1 cut(s) 741
EcoT38I GRGCYC 3 cut(s) 1802, 2590, 6774
ErhI CCWWGG 7 cut(s) 1183, 3460, 3939, 5184, 5195, 5925, 6044
Esp3I CGTCTC 1 cut(s) 5786
FalI AAGNNNNNCTT 6 cut(s) 144, 176, 4611, 4643, 4650, 4682
FaqI GGGAC 7 cut(s) 1465, 1508, 3442, 3948, 4146, 5683, 6437
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 3721
FbaI TGATCA 7 cut(s) 628, 1141, 1207, 1552, 1783, 2656, 3871
FriOI GRGCYC 3 cut(s) 1802, 2590, 6774
GlaI GCGC 2 cut(s) 3892, 6533
GsaI CCCAGC 2 cut(s) 2634, 3599
GsuI CTGGAG 8 cut(s) 57, 708, 1095, 1293, 1422, 2118, 2730, 5966
HaeIII GGCC 8 cut(s) 290, 1592, 1953, 2583, 2940, 3255, 5200, 5860
HapII CCGG 4 cut(s) 584, 1779, 2937, 6525
HgaI GACGC 4 cut(s) 2659, 3345, 4581, 5741
HhaI GCGC 2 cut(s) 3893, 6534
Hin6I GCGC 2 cut(s) 3891, 6532
HinP1I GCGC 2 cut(s) 3891, 6532
HincII GTYRAC 6 cut(s) 2340, 3024, 5731, 6244, 6435, 6753
HindII GTYRAC 6 cut(s) 2340, 3024, 5731, 6244, 6435, 6753
HindIII AAGCTT 4 cut(s) 4704, 5535, 5844, 6113
HpaI GTTAAC 1 cut(s) 6244
HpaII CCGG 4 cut(s) 584, 1779, 2937, 6525
HpyCH4IV ACGT 4 cut(s) 3073, 3649, 5635, 5831
HpySE526I ACGT 4 cut(s) 3073, 3649, 5635, 5831
HspAI GCGC 2 cut(s) 3891, 6532
KflI GGGWCCC 1 cut(s) 4160
Kpn2I TCCGGA 1 cut(s) 6524
KpnI GGTACC 1 cut(s) 3333
Ksp22I TGATCA 7 cut(s) 628, 1141, 1207, 1552, 1783, 2656, 3871
KspAI GTTAAC 1 cut(s) 6244
LguI GCTCTTC 2 cut(s) 6033, 6568
MaeII ACGT 4 cut(s) 3073, 3649, 5635, 5831
MbiI CCGCTC 1 cut(s) 353
MfeI CAATTG 3 cut(s) 2520, 2676, 5300
MflI RGATCY 9 cut(s) 466, 610, 1420, 1891, 2312, 3577, 3628, 4624, 6377
MhlI GDGCHC 7 cut(s) 62, 257, 1802, 2590, 3655, 6580, 6774
MlsI TGGCCA 2 cut(s) 1953, 5200
MluI ACGCGT 1 cut(s) 5733
MluNI TGGCCA 2 cut(s) 1953, 5200
MmeI TCCRAC 9 cut(s) 511, 2107, 2290, 2402, 3119, 4099, 4740, 5698, 6453
Mox20I TGGCCA 2 cut(s) 1953, 5200
Mph1103I ATGCAT 1 cut(s) 741
MroI TCCGGA 1 cut(s) 6524
MroXI GAANNNNTTC 5 cut(s) 156, 345, 511, 1879, 6898
MscI TGGCCA 2 cut(s) 1953, 5200
MslI CAYNNNNRTG 2 cut(s) 1112, 3294
Msp20I TGGCCA 2 cut(s) 1953, 5200
MspCI CTTAAG 1 cut(s) 1118
MspI CCGG 4 cut(s) 584, 1779, 2937, 6525
MunI CAATTG 3 cut(s) 2520, 2676, 5300
Mva1269I GAATGC 3 cut(s) 3040, 3763, 3893
MvnI CGCG 1 cut(s) 5735
NciI CCSGG 1 cut(s) 2937
NcoI CCATGG 2 cut(s) 5184, 5925
NdeI CATATG 1 cut(s) 3721
NheI GCTAGC 1 cut(s) 5143
NmeAIII GCCGAG 2 cut(s) 1753, 2609
NsiI ATGCAT 1 cut(s) 741
NspI RCATGY 6 cut(s) 1520, 1616, 1808, 2093, 4295, 5840
NspV TTCGAA 1 cut(s) 2880
PaeI GCATGC 2 cut(s) 1616, 4295
PagI TCATGA 2 cut(s) 2389, 2788
PaqCI CACCTGC 1 cut(s) 3928
PasI CCCWGGG 1 cut(s) 4164
PciI ACATGT 3 cut(s) 1516, 1804, 5836
PciSI GCTCTTC 2 cut(s) 6033, 6568
PctI GAATGC 3 cut(s) 3040, 3763, 3893
PdmI GAANNNNTTC 5 cut(s) 156, 345, 511, 1879, 6898
PflMI CCANNNNNTGG 1 cut(s) 6695
PfoI TCCNGGA 3 cut(s) 1072, 5317, 6098
PinAI ACCGGT 1 cut(s) 583
Ppu21I YACGTR 2 cut(s) 3650, 5636
PpuMI RGGWCCY 2 cut(s) 3728, 4160
PscI ACATGT 3 cut(s) 1516, 1804, 5836
PshAI GACNNNNGTC 1 cut(s) 6873
PsiI TTATAA 1 cut(s) 2163
Psp1406I AACGTT 1 cut(s) 3073
Psp5II RGGWCCY 2 cut(s) 3728, 4160
PspEI GGTNACC 2 cut(s) 4540, 6911
PspFI CCCAGC 2 cut(s) 2630, 3595
PspPPI RGGWCCY 2 cut(s) 3728, 4160
PsrI GAACNNNNNNTAC 2 cut(s) 2445, 2477
PstNI CAGNNNCTG 7 cut(s) 305, 1331, 1775, 2665, 3695, 4796, 5510
PsuI RGATCY 9 cut(s) 466, 610, 1420, 1891, 2312, 3577, 3628, 4624, 6377
PvuII CAGCTG 7 cut(s) 2069, 4193, 4727, 4862, 4868, 5751, 6692
RsaI GTAC 9 cut(s) 522, 3331, 3509, 4228, 4524, 4555, 4905, 4960, 5514
RsaNI GTAC 9 cut(s) 521, 3330, 3508, 4227, 4523, 4554, 4904, 4959, 5513
RseI CAYNNNNRTG 2 cut(s) 1112, 3294
SapI GCTCTTC 2 cut(s) 6033, 6568
ScaI AGTACT 3 cut(s) 3509, 4905, 4960
SduI GDGCHC 7 cut(s) 62, 257, 1802, 2590, 3655, 6580, 6774
SfuI TTCGAA 1 cut(s) 2880
SmiMI CAYNNNNRTG 2 cut(s) 1112, 3294
SmlI CTYRAG 6 cut(s) 548, 1118, 3844, 4613, 5454, 5820
SmoI CTYRAG 6 cut(s) 548, 1118, 3844, 4613, 5454, 5820
SpeI ACTAGT 3 cut(s) 3554, 4514, 6233
SphI GCATGC 2 cut(s) 1616, 4295
SspI AATATT 2 cut(s) 2290, 6278
StyI CCWWGG 7 cut(s) 1183, 3460, 3939, 5184, 5195, 5925, 6044
TaiI ACGT 4 cut(s) 3076, 3652, 5638, 5834
TaqI TCGA 5 cut(s) 544, 2273, 2880, 3928, 6768
TaqII GACCGA 1 cut(s) 2993
TatI WGTACW 5 cut(s) 3507, 4226, 4903, 4958, 5512
TauI GCSGC 6 cut(s) 3041, 4820, 4838, 4841, 4844, 5944
TspGWI ACGGA 4 cut(s) 2765, 3355, 6293, 6847
Van91I CCANNNNNTGG 1 cut(s) 6695
Vha464I CTTAAG 1 cut(s) 1118
XagI CCTNNNNNAGG 1 cut(s) 3699
XbaI TCTAGA 4 cut(s) 469, 1888, 4418, 6902
XceI RCATGY 6 cut(s) 1520, 1616, 1808, 2093, 4295, 5840
XcmI CCANNNNNNNNNTGG 3 cut(s) 1364, 2705, 2948
XmnI GAANNNNTTC 5 cut(s) 156, 345, 511, 1879, 6898
ZrmI AGTACT 3 cut(s) 3509, 4905, 4960
Zsp2I ATGCAT 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.