Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320585.1

Orthogroup ID

OG0002656

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 879

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 878 bp

atggagtatgatgacaatgattttcaaagccagaatcttcaattagctggtgaagggagcaccaattgtcctccagttttacagccatatggtcttcccaaatttgattttgatgacagccttcaggggcatttgaggtttgatagtttggttgaaactgaggtttttcttggcattgagagtagcgaagctaacaactggattgaggatttctctcgtgggagtagtgggatagagtttagttcaagtgcagtagaatcgtgctctatatcaaggcggaacaatgtttggtctgaggccacgtcctcagaatctgttgaaatgctattaaaatctgttgggcaggaagagataattcccgctcagactatcttggaggaatcagatgcctgtaaggaagtgggttgcataaaacagatggagactaatttgaaaaatgatgataacattctcgccgaaacaggggatgttagagatctacattctactttactgctagatgaaactgccggaaacctttctggcttagataatgttggagatcagcctcggcttgaggatgcttcacaaactcaggaagttgaattaccggttggtggaaattcaagtgttttggatccaaattctgtcagtgatcgggataggctgcctgtaactacagggagcctgactgatgataaaggcaaggatgtgaataatatggaatttgataatttagttgattatcctccagataaaaaaatgcatgaaaattcatctgcttcagagatgcaagttgataatatgatgacttctgtgcgaagtattattacaagcagtgatgagttgaataatcaagatgttccacatcatatagtggatattactgaagagaatcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

293

Amino Acids

32.23

Weight (kDa)

4.05

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17330 AT4G17330 AT4G17330
fragaria_vesca	FvH4_5g19090 FvH4_5g19090 FvH4_5g19090
malus_domestica	MD04G1062800.v1.1 MD06G1057100.v1.1
prunus_persica	Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1
pyrus_communis	pycom04g05620 pycom04g05630 pycom04g05650 pycom06g04780 pycom06g04790
rosa_chinensis	RchiOBHm_Chr7g0203541
rosa_laevigata	RLG00000003521
rosa_multiflora	Rmu_co8304519.1_g000001 Rmu_co8320585.1_g000001 Rmu_sc0007812.1_g000001 Rmu_sc0010675.1_g000010 Rmu_sc0021549.1_g000001 Rmu_sc0028511.1_g000001 Rmu_ssc0000362.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253720
rosa_rugosa	Rorug07G0076800 Rorug07G0076800 Rorug07G0076800 Rorug07G0076800
rosa_samantha	Rh7AG206400 Rh7BG206000 Rh7CG218900 Rh7DG213600
rosa_wichuraiana	Rw7G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	362
AciI	CCGC	2 cut(s)	277, 360
AclWI	GGATC	2 cut(s)	611, 624
AcsI	RAATTY	5 cut(s)	101, 601, 622, 704, 751
AcuI	CTGAAG	2 cut(s)	107, 747
AfiI	CCNNNNNNNGG	2 cut(s)	462, 596
AgeI	ACCGGT	1 cut(s)	589
AgsI	TTSAA	9 cut(s)	26, 41, 155, 246, 320, 433, 584, 606, 829
AjiI	CACGTC	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	2 cut(s)	47, 191
AluI	AGCT	2 cut(s)	47, 191
Alw21I	GWGCWC	2 cut(s)	62, 266
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	611, 624
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	646
ApoI	RAATTY	5 cut(s)	101, 601, 622, 704, 751
AsiGI	ACCGGT	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	4 cut(s)	570, 602, 793, 825
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	62, 266
BbvI	GCAGC	1 cut(s)	633
BccI	CCATC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	657
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	1 cut(s)	647
BlsI	GCNGC	1 cut(s)	648
BmgBI	CACGTC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	618, 665
BmsI	GCATC	3 cut(s)	376, 550, 759
BpiI	GAAGAC	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	2 cut(s)	57, 714
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 596
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	74, 203
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	3 cut(s)	472, 565, 694
BseLI	CCNNNNNNNGG	2 cut(s)	462, 596
BseMII	CTCAG	5 cut(s)	150, 285, 321, 377, 587
BseNI	ACTGG	2 cut(s)	74, 203
BseXI	GCAGC	1 cut(s)	633
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	299
BshTI	ACCGGT	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	62, 266
BsiSI	CCGG	2 cut(s)	510, 590
BslI	CCNNNNNNNGG	2 cut(s)	462, 596
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	62, 266
Bsp143I	GATC	4 cut(s)	475, 541, 616, 634
BspACI	CCGC	2 cut(s)	277, 360
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	5 cut(s)	151, 286, 320, 376, 586
BspLI	GGNNCC	2 cut(s)	618, 665
BspPI	GGATC	2 cut(s)	611, 624
BsrBI	CCGCTC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	74, 203
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	4 cut(s)	475, 541, 616, 634
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst6I	CTCTTC	2 cut(s)	342, 864
BstDEI	CTNAG	6 cut(s)	159, 294, 307, 363, 526, 573
BstF5I	GGATG	3 cut(s)	472, 565, 694
BstKTI	GATC	4 cut(s)	478, 544, 619, 637
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	475, 541, 616, 634
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	1 cut(s)	633
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	475, 616
BstYI	RGATCY	2 cut(s)	475, 616
BsuRI	GGCC	1 cut(s)	299
BtrI	CACGTC	1 cut(s)	303
BtsCI	GGATG	3 cut(s)	472, 565, 694
BtsI	GCAGTG	1 cut(s)	823
BtsIMutI	CAGTG	2 cut(s)	637, 823
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	589
CspAI	ACCGGT	1 cut(s)	589
CviAII	CATG	1 cut(s)	746
DdeI	CTNAG	6 cut(s)	159, 294, 307, 363, 526, 573
DpnI	GATC	4 cut(s)	477, 543, 618, 636
DpnII	GATC	4 cut(s)	475, 541, 616, 634
Eam1104I	CTCTTC	2 cut(s)	342, 864
EarI	CTCTTC	2 cut(s)	342, 864
EciI	GGCGGA	1 cut(s)	292
Eco57I	CTGAAG	2 cut(s)	107, 747
EcoT22I	ATGCAT	1 cut(s)	747
FaeI	CATG	1 cut(s)	749
FatI	CATG	1 cut(s)	745
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	647
FokI	GGATG	3 cut(s)	479, 572, 701
Fsp4HI	GCNGC	1 cut(s)	647
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	1 cut(s)	647
GsuI	CTGGAG	2 cut(s)	57, 714
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	510, 590
Hin1II	CATG	1 cut(s)	749
HinfI	GANTC	5 cut(s)	34, 257, 311, 380, 874
HpaII	CCGG	2 cut(s)	510, 590
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	5 cut(s)	295, 310, 366, 385, 766
Hpy188III	TCNNGA	4 cut(s)	575, 638, 731, 836
HpyAV	CCTTC	2 cut(s)	47, 131
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	4 cut(s)	251, 408, 745, 772
HpyF3I	CTNAG	6 cut(s)	159, 294, 307, 363, 526, 573
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	1 cut(s)	749
Kzo9I	GATC	4 cut(s)	475, 541, 616, 634
LmnI	GCTCC	2 cut(s)	57, 663
Lsp1109I	GCAGC	1 cut(s)	633
LweI	GCATC	3 cut(s)	376, 550, 759
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	4 cut(s)	477, 543, 618, 636
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	4 cut(s)	475, 541, 616, 634
MboII	GAAGA	3 cut(s)	29, 86, 359
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	2 cut(s)	475, 616
MhlI	GDGCHC	2 cut(s)	62, 266
MmeI	TCCRAC	1 cut(s)	517
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	1 cut(s)	329
MspI	CCGG	2 cut(s)	510, 590
MunI	CAATTG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	475, 541, 616, 634
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	2 cut(s)	618, 665
NmeAIII	GCCGAG	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	34, 257, 311, 380, 874
PinAI	ACCGGT	1 cut(s)	589
PkrI	GCNGC	1 cut(s)	648
PspN4I	GGNNCC	2 cut(s)	618, 665
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	475, 616
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	647
Sau3AI	GATC	4 cut(s)	475, 541, 616, 634
SduI	GDGCHC	2 cut(s)	62, 266
SetI	ASST	6 cut(s)	49, 140, 165, 193, 305, 519
SfaNI	GCATC	3 cut(s)	376, 550, 759
SfcI	CTRYAG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SsiI	CCGC	2 cut(s)	277, 360
SspMI	CTAG	1 cut(s)	497
TaiI	ACGT	1 cut(s)	305
TfiI	GAWTC	5 cut(s)	34, 257, 311, 380, 874
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	637, 823
TseI	GCWGC	1 cut(s)	646
TspDTI	ATGAA	3 cut(s)	516, 744, 762
TspRI	CASTG	2 cut(s)	637, 823
XapI	RAATTY	5 cut(s)	101, 601, 622, 704, 751
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.