Rh7DG213600

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002656
Physical Location & Seq
Reverse (-)
20584274 .. 20596118
11845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG213600.1

Sequence Viewer

Length: 5739 bp
ATGGAGTATGATGACAATGATTTTCAAAGCCAGAATCTTCAATTAGCTGGTGAAGGGAGCACCAATTGTCCTCCAGTTTTACAGCCATATGGTCTTCCCAAATTTGATTTTGATGACAGCCTTCAGGGGCATTTGAGGTTTGATAGTTTGGTTGAAACTGAGGTTTTTCTTGGCATTGAGAGTAGCGAAGCTAACAACTGGATTGAGGATTTCTCTCGTGGGAGTAGTGGGATAGAGTTTAGTTCAAGTGCAGTAGAATCGTGCTCTATATCAAGGCGGAACAATGTTTGGTCTGAGGCCACGTCCTCAGAATCTGTGGAAATGCTATTAAAATCTGTTGGGCAGGAAGAAATAATTCCCGCTCAGACTATCTTGGAGGAATCAGATGCCTGTAAGGAAGTGGGTTGCATAAAACAGATGGATACTAATTTGAAGAATGATGATAACATTCTCACTGAAACAGGGGATGTTAGAGATCTACATTCTACTTTACTGCTAGATGAAACTGCCGGAAACCTTTCTGGCTTAGATAATGTTGGAGATCAGCCTCGGCTTGAGGATGCTTCACAAACTCAGGAAGTTGAATTACCAGTTGATGGAAATTCAAGTGTTTTGGATCCAAATTCTGTCAGTGATCGGGATAGGCTGCCTGTAACTACAGGGAGCCTGACTGATGATAAAGGCAAGGATGTGAATAATATGGAATTTGATAATTTAGTTGATTATCCTCCAGATAAAAAAATGCATGAAAATTCATCTGCTTCAGAGATGCAAGTTGATAATATGATGACTTCTGTGCGAAGTATTATTACAAGCAGTGATGAGTTGAATAATCAAGATGTTCCACATCATATAGTGGATATTACTGAAGAGAATCCAGGCAGTCATGATGTGGCAAGCATAGATATTCAATGTAGGAATGATTTGGACAAACCTCATTGTTTAGCTTCAGAGGTGGAGTCTGGAAAAAAAGAAATTGCAAATGAAGATACTGTTATTGATGTGCAGGAAGCGTCTAAAATTATGCTGCAAGGGGATTCTATTTTACATACAATGGGTGGATGCAGTGATAAGGAATGTCCTGGAGTTCTTACTGAGACCAATAAATGTGAAGATCTGGTACTGTCTAAGGACCCTGATGTTGGTGGTGATCAATCCACAATGACCTACACAAATGATGCTGGGTATGGAATTGAGGTTAGGAACAACCTTGGCGAAATTTCTTCCAGTCTAGATCCTATTCTGAAAGGGGAATCTGATTTACAGACAGTGGACAGATGCACTGACAGGGAATGCCCTGAAGTTCTTGATGACACCAACAAATGTGAAGATGTTGTTATCTCTTTTAAAGACACAGATACTGGTGGTGTTCCAGCTAAGTCTGACAAAAATGACAGTGGTTATGGCACTGAGGATCAGAACAGCAATACTGGAGTTTTGTCTGGTCTAGATCCTACCCTCAAAGGGGATTCTAACTTGTGTACAATGGATGTATGTACTGTCAAGGAATCCCCTGAAGTTCCTTCTGTCTCGTTGAAAGCTACAGACACTGGTGGTGATCAATCTAAATTACACACACCTGACTTATCACCAAATGGGAATGACACCGGGCATGCAGTTGAACTTGGCAACAGTGTTTCTGCCTGTGCAAGCCCTACCTTGAGGACGGATAATGATTTACATACAGTGGATGCAAGTAGTGACAGGAAATGCCTTGATGTTCATGTGGAGACCACTAAATGTGAAGACATAGTGTTGTCCAAAGGCACAGATACTACCGGTGATCAATCTAACATAAGCCCACATGTTTTATCACCTGTAGCCTACAAAAGTGATACTGTGTATGCAGATGAGGTCGGGAACAGCAATTCTGGATTTTCGTCCAGTCTAGACTCTAGATTGAAGGTGAATTCTGGAAAGAGCACCGAGGAGGATGCATTAAAAAGTGGTGGCCAACCCATTGATAGTGAGATTTTGGTCAGAAAGTCTGAGGCTTCTATGGCAGTCATTGAGGAAACTGAGGTTTTCAAAGGCAGAGGTGATGAGAATCCGGAAGTTCATTCTAATTTGACTCCAACATGCTCTTCAGCCGAAATGCCTAGTGAAGTGCATGTGACTGGAGCTTCTAAAAGTCTCCATGATGCTTTTGGAGTTTCTGCTGAGGAATTAAATGAAGAAAGCCATGTGTCACCTTCTAATCTGAAGGAGTCTACAGAAAGGTGTTCTGAAAATGAAGTTTGCAAAGAAGGTATATCTGGTAAATGTGACCAGGATCTCTCTTACAGTGAAAAGGATACTACAAATTTACCTGTTGAATCTAATAGTATGGATTTGGAGTTTGTTGGATCTGCTGGTAAGGGAGATGAGTCCTCATCTTTGTGTGAAGATTCTGCAGAAAAAGAGTTGATTGTTCCAACACTAAAACATGATGTTGATGGCAATGCATCAGTGGCTGATGTTCCCTTGGAAAGTTGTGATCTGGCTTCTTGCGGCACAAGGGATGTTGTTCCCTTGTCTTCTGAGAATGGTGCAACCACACATATTCATAACGTATCAGTGGTTCCTGCAGCACCTTCTCCTGCTATGGGATCACACTCGGACAATAAAGGAGAAACTGCAATCGAAATATCCAAAGATACAAGTGTATCAGGTACAGTGTCATCACCCATGGTAGAATCTGGACCAGGCCCTGTTTGTGAAGCTGAAAAAGGTGCTTCTTGTGATACTGCTGGACAACTGTTATGCAATACGCTTGATCAGTCTCTGCCAATTTCAGTTAGTTGCAATACTGAAAACCAAAGTGAACCTGGAACAGCAGTTGCTATTGAAATTAGCAAGAGAAGCACAACGGATATGGAAGTAAAACGAGGTGATGATGCTGAAGCTCAAGATGGAGCAACAACAGAAAACAAATCTACCACAGAAGACAAATCTGAAAAGGCATCAGCGAATGTAACAGGTGATGCTTTTGGAAATTTTGAAGGTCCAATGCTTTCTACTTGTTCGCCCGAATCTTGTTCTAAGTCTGCTGATCCCTACCAGCCTGGTTGTGATTCTCCCAAAGTTTTTGGAACAACTGAGATTCCTGAGACTAAACATGAAAAAGGCAATATCAAGGAGTCGACAAATCAGAATGCCGCAGATACTAACGTAGTTGGGGATGGCGGCAAACATTCTTCTAATTCCTCGAATCCAACTGGAAATGATGTCCCCAAAGATCAGGGATATGGCACCTCAGATATCACTTCCTTTGCAGATTTGCCTATAGGGGTTGCTGCCAACAGCTCGCAGCCCTTTCCTGCTATTTCAGCTCCCAAAATTGTAGATGGGTCTCAAACAAATTCTGCCTCAGGCCAGATGGATGCAAAGATCTCGCAAGAAATTTCTCGTGGAGGTGATGGAGAGATTGCTGGTGGTGGTTCTAAAGGTACCACAGAACGGAAAAGAAGGCGAGCATCTAGTAAGGGAACAGGTAAAGAGAGTGCTAAGAAGGGAACTGTGAAAGCGACAACTCCTATGAGACAAGCAGACAGAGGAGACAAATCTAGCAGTGTGCCCCTGGGGAAATCTGGAATTTTTCAGTTTGCGCATCCAAGTGACATACAGTACTTCGGGCTTGTGGATGGTAGCTCAAAAACTTATTCAGTTCTTACTAGTGCAACATCTGGTCTGCCAGATCTGAATTCTTCTGCTCCAGCATCTCTAGTATTTCAGCAGCCTTTCACCGATCTGCAGCAAGTGCAATTACGTGCTCAGATCTTTGTTTATGGAGCTTTGATTCAAGGAACAGCACCTGATGAAGCTTATATGGTGTCGGCATATGGAGGACCTGATGGTGGAAGGAGTATCTGGGAGAATGCGTGGCGTAAGTGCATAGAGAGGCTACACAGTCAAAAATCTACCCCTATTAATCCAGAAACCCTTTTGCAGTCATCCTCTGACCTGAGATTTACAGGTGGTAGGGTTCCTGATCAAGCTGGTAAACAAAGTGCATTCCAGGGTAAAGTTATCTCCTCACCTGCTGGTCGAGCCAGCACAAAGGGTATTCCACCTACTGCGAGTCCCATGATACCAATTTCATCACCGCTTTGGAGCATTCCTACCCCTGCTTGTGAGGCCCCTCAATATAGTGTTCTGCCGAGAGGTTCGGTAATGGATTATCAGCAGGCCCATACTCCATTGCATCCTTTCCAAACATCACCCATAAGGAACATTGTTGGACAAAATTCCTCGTGGATGTCTCAGTCCCCGTTTCGGGGTCCCTGGGTTCCTTCTCCACAGTCATCTGCAGCTGAAACCAGTATTCGTTTCTCAGCATTTCCTAGTACAGAGTCAGTGCTGCTGACTCCTGTAAAAGAAACAACTTCATCACAAGTATCCAGTATAAAGCATGCCTCCTCGGTTGTTACTGGTCAAACTGGGGCTACAACCAGTGTTTTTGCAGGGGTTTCTCCACTGCTTGACTCAAAGAAAGTGGGAGTAGCATCACCTGGCGAGCCTTCATCTCAACCTAAGTCTAGAAAAAGAAAAAAGATCTCAGATTCTAAGGAACTTGGTCCGATTAGTTTGCAGCCTCAATCTGAACCTGAGTCAGCTATAACCCTGGCTGTTACTAGTAGTGTATCTACATCTGTTGTAGTCACTGCCCCAAGTACCTTTGTGTCTAAGGCCATGCCAGAAAAATTGGCTATGTCGGTATCCTCCGATCACCTCAAGAAAGCAGATCTTGGTTTGGAGCAGAGGGCAACTTTATCAAAAGAGACTCTTAGTAAAGCTAAGGAGGCTAGGCAACAAGCAGAGGAAGCTTCTGCTCATGCTGCTGCAGCTGTTGGTCACAGTCAAGAAATATGGAGTCAGTTGGATAAGCAGAAACATTCCGGATTGACATCAGATGCCGAAGCCAAATTAGCTTCTGCTGCTGTTGCTGTAGCTGCCGCCGCTGCTGTTGCAAAAGCAGCAGCTGCAGCTGCCAATGTTGCGGCAAATGCTGCATTGCAAGCAGTACTGATGGCTGAGGAAGCCTATGGGAATCAAAGTGAAAGTATGGTAGATTTGAGTACTGATGGAGTGAATGCATTGGGATTGGCTGCTCCAGGATCTGTTTTTAGTGCTGAGGATGGAACAAACAGTTCAAGTTCAATCCTTTTTGCTGCTAGAGAGGCTGCTAGAAGGAGGGTTGAAGCTGCATCTGCAGCCTCAAAGCGAGCTGAAAATATGGACGCCATAGTAAAAGCTGCTGAGCTAGCCGCAGAAGCTGTATCACAAGCTGGAACAGTTGTTGCTATGGGTGATCCTGTGCCTTTGAGCGACTTGGTAAAAGCTGGTCCTGAGGGTTATTGGAAAGCACCCCAAGTATCTTCAGAGACTGTTAAGAAATCAAATGACGGAATGAGGGAACAATCAAATTTTTCCACTGTTGGAGAAGATTCAGATAAGGAAGAAACACTGATCACTGCCACTAAGAAATCGCCTACAGTCGGTGAAAGGGTTACTGAGATTATAAAGTCTGCTTTGCCCACTGCTGGGAATGATCTTGGAAAAACTGCAGAAGCGTCCAAAGATAGCTGCATCGTTGAGGGTTCTCAAGTAGAGGTTTTCAAAGAAGGGGGTGGATTTGCAGTGGGCTGGTTCACAGCTACTGTATTGAGTTTGCAGGACGGCAAAGCATGTGTATGTTACACTGAGCTTCAGTCAGACGAAGGTATGCTTCTCTCAGTGCTGCCAGATAGTAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

1912

Amino Acids

201.1

Weight (kDa)

4.57

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 1860 - 1901 8.1e-06 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 5501
AarI CACCTGC 1 cut(s) 4027
Acc16I TGCGCA 1 cut(s) 3588
Acc36I ACCTGC 1 cut(s) 4027
Acc65I GGTACC 1 cut(s) 3428
AccB1I GGYRCC 2 cut(s) 3230, 3428
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 2 cut(s) 2210, 3122
AccIII TCCGGA 2 cut(s) 2050, 4877
AcoI YGGCCR 1 cut(s) 1951
AcyI GRCGYC 1 cut(s) 5220
AflIII ACRYGT 1 cut(s) 1804
AgeI ACCGGT 1 cut(s) 1778
AhlI ACTAGT 2 cut(s) 3653, 4613
AjiI CACGTC 1 cut(s) 303
AjuI GAANNNNNNNTTGG 2 cut(s) 2068, 2100
Alw21I GWGCWC 4 cut(s) 62, 266, 1925, 3754
Aor13HI TCCGGA 2 cut(s) 2050, 4877
AoxI GGCC 7 cut(s) 297, 1951, 2686, 3352, 4116, 4167, 4668
AseI ATTAAT 1 cut(s) 3909
AsiGI ACCGGT 1 cut(s) 1778
Asp700I GAANNNNTTC 2 cut(s) 354, 517
Asp718I GGTACC 1 cut(s) 3428
AspLEI GCGC 1 cut(s) 3589
AsuC2I CCSGG 1 cut(s) 1609
AsuNHI GCTAGC 1 cut(s) 5242
AvaII GGWCC 7 cut(s) 1132, 2681, 2984, 3827, 4259, 4556, 5324
AxyI CCTNAGG 2 cut(s) 3349, 5328
BaeGI GKGCMC 1 cut(s) 3558
BaeI ACNNNNGTAYC 6 cut(s) 2628, 2628, 2661, 2661, 3135, 3168
BalI TGGCCA 1 cut(s) 1953
BamHI GGATCC 1 cut(s) 616
BanI GGYRCC 2 cut(s) 3230, 3428
BarI GAAGNNNNNNTAC 6 cut(s) 570, 602, 793, 825, 1104, 1136
BauI CACGAG 3 cut(s) 216, 3387, 4231
BbsI GAAGAC 4 cut(s) 86, 1752, 2508, 2931
Bbv12I GWGCWC 4 cut(s) 62, 266, 1925, 3754
BbvCI CCTCAGC 3 cut(s) 2160, 5013, 5112
BceAI ACGGC 1 cut(s) 5674
BcgI CGANNNNNNTGC 8 cut(s) 240, 274, 1916, 1950, 3354, 3388, 4549, 4583
BciVI GTATCC 4 cut(s) 415, 2287, 4387, 4708
BclI TGATCA 6 cut(s) 1150, 1558, 1783, 2755, 3970, 5448
BcnI CCSGG 1 cut(s) 1609
BcuI ACTAGT 2 cut(s) 3653, 4613
BfuAI ACCTGC 1 cut(s) 4027
BfuI GTATCC 4 cut(s) 415, 2287, 4387, 4708
BglII AGATCT 7 cut(s) 475, 1114, 3369, 3676, 3756, 4533, 4723
BlpI GCTNAGC 1 cut(s) 5238
BmcAI AGTACT 3 cut(s) 3608, 5004, 5059
Bme18I GGWCC 7 cut(s) 1132, 2681, 2984, 3827, 4259, 4556, 5324
BmgBI CACGTC 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 4428
BmtI GCTAGC 1 cut(s) 5246
BmuI ACTGGG 1 cut(s) 4428
BpiI GAAGAC 4 cut(s) 86, 1752, 2508, 2931
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 7 cut(s) 57, 714, 1104, 1452, 2139, 3678, 5076
Bpu10I CCTNAGC 4 cut(s) 2160, 4776, 5013, 5112
Bpu1102I GCTNAGC 1 cut(s) 5238
BpuEI CTTGAG 5 cut(s) 575, 1681, 2871, 4697, 5568
BpuMI CCSGG 1 cut(s) 1609
BsaAI YACGTR 1 cut(s) 3749
BsaBI GATNNNNATC 2 cut(s) 2046, 4885
BsaHI GRCGYC 1 cut(s) 5220
BsaI GGTCTC 3 cut(s) 1091, 1724, 3336
BsaWI WCCGGW 3 cut(s) 1778, 2050, 4877
BsaXI ACNNNNNCTCC 2 cut(s) 3845, 3875
Bse118I RCCGGY 1 cut(s) 1778
Bse21I CCTNAGG 2 cut(s) 3349, 5328
Bse3DI GCAATG 3 cut(s) 2446, 4178, 4991
Bse8I GATNNNNATC 2 cut(s) 2046, 4885
BseAI TCCGGA 2 cut(s) 2050, 4877
BseJI GATNNNNATC 2 cut(s) 2046, 4885
BseMI GCAATG 3 cut(s) 2446, 4178, 4991
BseRI GAGGAG 4 cut(s) 1943, 3549, 4003, 4387
BseSI GKGCMC 1 cut(s) 3558
BseYI CCCAGC 2 cut(s) 1181, 5522
BsgI GTGCAG 2 cut(s) 270, 1025
BshFI GGCC 7 cut(s) 299, 1953, 2688, 3354, 4118, 4169, 4670
BshNI GGYRCC 2 cut(s) 3230, 3428
BshTI ACCGGT 1 cut(s) 1778
BsiHKAI GWGCWC 4 cut(s) 62, 266, 1925, 3754
BsiSI CCGG 5 cut(s) 510, 1608, 1779, 2051, 4878
BslFI GGGAC 4 cut(s) 3194, 4047, 4231, 4245
BsmFI GGGAC 4 cut(s) 3194, 4047, 4231, 4245
BsmI GAATGC 6 cut(s) 1298, 3139, 3862, 3992, 4095, 5077
BsnI GGCC 7 cut(s) 299, 1953, 2688, 3354, 4118, 4169, 4670
Bso31I GGTCTC 3 cut(s) 1091, 1724, 3336
Bsp1286I GDGCHC 5 cut(s) 62, 266, 1925, 3558, 3754
Bsp13I TCCGGA 2 cut(s) 2050, 4877
Bsp1407I TGTACA 1 cut(s) 1481
Bsp1720I GCTNAGC 1 cut(s) 5238
Bsp19I CCATGG 1 cut(s) 2667
BspANI GGCC 7 cut(s) 299, 1953, 2688, 3354, 4118, 4169, 4670
BspEI TCCGGA 2 cut(s) 2050, 4877
BspHI TCATGA 1 cut(s) 886
BspMAI CTGCAG 8 cut(s) 2395, 2569, 3735, 4291, 4825, 4966, 5194, 5548
BspMI ACCTGC 1 cut(s) 4027
BspOI GCTAGC 1 cut(s) 5246
BspQI GCTCTTC 1 cut(s) 2089
BspT107I GGYRCC 2 cut(s) 3230, 3428
BspTNI GGTCTC 3 cut(s) 1091, 1724, 3336
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 3 cut(s) 2446, 4178, 4991
BsrFI RCCGGY 1 cut(s) 1778
BsrGI TGTACA 1 cut(s) 1481
BssAI RCCGGY 1 cut(s) 1778
BssNI GRCGYC 1 cut(s) 5220
BssSI CACGAG 3 cut(s) 216, 3387, 4231
BssT1I CCWWGG 3 cut(s) 1210, 2463, 2667
Bst2BI CACGAG 3 cut(s) 216, 3387, 4231
Bst6I CTCTTC 2 cut(s) 864, 2089
BstACI GRCGYC 1 cut(s) 5220
BstAPI GCANNNNNTGC 3 cut(s) 3739, 4961, 4988
BstAUI TGTACA 1 cut(s) 1481
BstBAI YACGTR 1 cut(s) 3749
BstDSI CCRYGG 1 cut(s) 2667
BstHHI GCGC 1 cut(s) 3589
BstNSI RCATGY 6 cut(s) 1616, 1808, 2082, 2114, 4394, 5670
BstSLI GKGCMC 1 cut(s) 3558
BstV2I GAAGAC 4 cut(s) 86, 1752, 2508, 2931
Bsu36I CCTNAGG 2 cut(s) 3349, 5328
BsuI GTATCC 4 cut(s) 415, 2287, 4387, 4708
BsuRI GGCC 7 cut(s) 299, 1953, 2688, 3354, 4118, 4169, 4670
BtgI CCRYGG 1 cut(s) 2667
BtrI CACGTC 1 cut(s) 303
BtsI GCAGTG 8 cut(s) 823, 1072, 3556, 4454, 4641, 5451, 5517, 5625
BveI ACCTGC 1 cut(s) 4027
CciI TCATGA 1 cut(s) 886
CfoI GCGC 1 cut(s) 3589
Cfr10I RCCGGY 1 cut(s) 1778
CseI GACGC 3 cut(s) 1002, 5228, 5541
CspAI ACCGGT 1 cut(s) 1778
CspCI CAANNNNNGTGG 2 cut(s) 4455, 4490
DraI TTTAAA 1 cut(s) 1348
EaeI YGGCCR 1 cut(s) 1951
Eam1104I CTCTTC 2 cut(s) 864, 2089
EarI CTCTTC 2 cut(s) 864, 2089
EciI GGCGGA 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 1210, 2463, 2667
Eco31I GGTCTC 3 cut(s) 1091, 1724, 3336
Eco32I GATATC 1 cut(s) 3241
Eco47I GGWCC 7 cut(s) 1132, 2681, 2984, 3827, 4259, 4556, 5324
Eco81I CCTNAGG 2 cut(s) 3349, 5328
EcoO109I RGGNCCY 5 cut(s) 1132, 2687, 3827, 4117, 4259
EcoRI GAATTC 2 cut(s) 1909, 3682
EcoRV GATATC 1 cut(s) 3241
EcoT14I CCWWGG 3 cut(s) 1210, 2463, 2667
EcoT22I ATGCAT 4 cut(s) 747, 1939, 2446, 5077
ErhI CCWWGG 3 cut(s) 1210, 2463, 2667
FalI AAGNNNNNCTT 6 cut(s) 4710, 4742, 4749, 4781, 5691, 5723
FaqI GGGAC 4 cut(s) 3194, 4047, 4231, 4245
FauI CCCGC 1 cut(s) 367
FauNDI CATATG 2 cut(s) 88, 3820
FbaI TGATCA 6 cut(s) 1150, 1558, 1783, 2755, 3970, 5448
FblI GTMKAC 2 cut(s) 2210, 3122
FspI TGCGCA 1 cut(s) 3588
GlaI GCGC 1 cut(s) 3588
GsaI CCCAGC 2 cut(s) 1185, 5526
GsuI CTGGAG 7 cut(s) 57, 714, 1104, 1452, 2139, 3678, 5076
HaeIII GGCC 7 cut(s) 299, 1953, 2688, 3354, 4118, 4169, 4670
HapII CCGG 5 cut(s) 510, 1608, 1779, 2051, 4878
HgaI GACGC 3 cut(s) 1002, 5228, 5541
HhaI GCGC 1 cut(s) 3589
Hin1I GRCGYC 1 cut(s) 5220
Hin6I GCGC 1 cut(s) 3587
HinP1I GCGC 1 cut(s) 3587
HincII GTYRAC 1 cut(s) 3123
HindII GTYRAC 1 cut(s) 3123
HindIII AAGCTT 2 cut(s) 3801, 4803
HpaII CCGG 5 cut(s) 510, 1608, 1779, 2051, 4878
Hpy166II GTNNAC 7 cut(s) 1273, 1482, 2211, 2804, 3123, 3983, 5631
Hpy8I GTNNAC 7 cut(s) 1273, 1482, 2211, 2804, 3123, 3983, 5631
HpyCH4IV ACGT 4 cut(s) 302, 2550, 3150, 3748
HpySE526I ACGT 4 cut(s) 302, 2550, 3150, 3748
Hsp92I GRCGYC 1 cut(s) 5220
HspAI GCGC 1 cut(s) 3587
KflI GGGWCCC 1 cut(s) 4259
Kpn2I TCCGGA 2 cut(s) 2050, 4877
KpnI GGTACC 1 cut(s) 3432
Ksp22I TGATCA 6 cut(s) 1150, 1558, 1783, 2755, 3970, 5448
LguI GCTCTTC 1 cut(s) 2089
MaeII ACGT 4 cut(s) 302, 2550, 3150, 3748
MbiI CCGCTC 1 cut(s) 362
MfeI CAATTG 1 cut(s) 64
MhlI GDGCHC 5 cut(s) 62, 266, 1925, 3558, 3754
MlsI TGGCCA 1 cut(s) 1953
MluNI TGGCCA 1 cut(s) 1953
MmeI TCCRAC 8 cut(s) 517, 2099, 2323, 2438, 3218, 4198, 4839, 5398
Mox20I TGGCCA 1 cut(s) 1953
Mph1103I ATGCAT 4 cut(s) 747, 1939, 2446, 5077
MroI TCCGGA 2 cut(s) 2050, 4877
MroXI GAANNNNTTC 2 cut(s) 354, 517
MscI TGGCCA 1 cut(s) 1953
MseI TTAA 6 cut(s) 329, 1347, 1940, 2168, 3909, 5370
MslI CAYNNNNRTG 3 cut(s) 2377, 3594, 5671
Msp20I TGGCCA 1 cut(s) 1953
MspA1I CMGCKG 5 cut(s) 4292, 4826, 4940, 4961, 4967
MspI CCGG 5 cut(s) 510, 1608, 1779, 2051, 4878
MunI CAATTG 1 cut(s) 64
Mva1269I GAATGC 6 cut(s) 1298, 3139, 3862, 3992, 4095, 5077
NciI CCSGG 1 cut(s) 1609
NcoI CCATGG 1 cut(s) 2667
NdeI CATATG 2 cut(s) 88, 3820
NheI GCTAGC 1 cut(s) 5242
NmeAIII GCCGAG 2 cut(s) 529, 4164
NmuCI GTSAC 7 cut(s) 1700, 2113, 2187, 2264, 3596, 4639, 4832
NsbI TGCGCA 1 cut(s) 3588
NsiI ATGCAT 4 cut(s) 747, 1939, 2446, 5077
NspI RCATGY 6 cut(s) 1616, 1808, 2082, 2114, 4394, 5670
PaeI GCATGC 2 cut(s) 1616, 4394
PagI TCATGA 1 cut(s) 886
PaqCI CACCTGC 1 cut(s) 4027
PasI CCCWGGG 2 cut(s) 3559, 4263
PciI ACATGT 1 cut(s) 1804
PciSI GCTCTTC 1 cut(s) 2089
PctI GAATGC 6 cut(s) 1298, 3139, 3862, 3992, 4095, 5077
PdmI GAANNNNTTC 2 cut(s) 354, 517
PflMI CCANNNNNTGG 1 cut(s) 596
PfoI TCCNGGA 2 cut(s) 1081, 5092
PinAI ACCGGT 1 cut(s) 1778
Ppu21I YACGTR 1 cut(s) 3749
PpuMI RGGWCCY 3 cut(s) 1132, 3827, 4259
PscI ACATGT 1 cut(s) 1804
PshBI ATTAAT 1 cut(s) 3909
PsiI TTATAA 1 cut(s) 5501
Psp5II RGGWCCY 3 cut(s) 1132, 3827, 4259
PspFI CCCAGC 2 cut(s) 1181, 5522
PspPPI RGGWCCY 3 cut(s) 1132, 3827, 4259
PsrI GAACNNNNNNTAC 2 cut(s) 2544, 2576
PstI CTGCAG 8 cut(s) 2395, 2569, 3735, 4291, 4825, 4966, 5194, 5548
PvuII CAGCTG 4 cut(s) 4292, 4826, 4961, 4967
RseI CAYNNNNRTG 3 cut(s) 2377, 3594, 5671
SalI GTCGAC 1 cut(s) 3121
SapI GCTCTTC 1 cut(s) 2089
SaqAI TTAA 6 cut(s) 329, 1347, 1940, 2168, 3909, 5370
ScaI AGTACT 3 cut(s) 3608, 5004, 5059
SduI GDGCHC 5 cut(s) 62, 266, 1925, 3558, 3754
SinI GGWCC 7 cut(s) 1132, 2681, 2984, 3827, 4259, 4556, 5324
SmiMI CAYNNNNRTG 3 cut(s) 2377, 3594, 5671
SmlI CTYRAG 5 cut(s) 554, 1660, 2886, 4712, 5583
SmoI CTYRAG 5 cut(s) 554, 1660, 2886, 4712, 5583
SpeI ACTAGT 2 cut(s) 3653, 4613
SphI GCATGC 2 cut(s) 1616, 4394
StyI CCWWGG 3 cut(s) 1210, 2463, 2667
TaiI ACGT 4 cut(s) 305, 2553, 3153, 3751
TaqI TCGA 4 cut(s) 2622, 3122, 3188, 4027
TatI WGTACW 6 cut(s) 1481, 1496, 3606, 4325, 5002, 5057
TauI GCSGC 7 cut(s) 2493, 3140, 3168, 4937, 4940, 4982, 5249
Tru1I TTAA 6 cut(s) 329, 1347, 1940, 2168, 3909, 5370
Tru9I TTAA 6 cut(s) 329, 1347, 1940, 2168, 3909, 5370
TseFI GTSAC 7 cut(s) 1700, 2113, 2187, 2264, 3596, 4639, 4832
Tsp45I GTSAC 7 cut(s) 1700, 2113, 2187, 2264, 3596, 4639, 4832
TspGWI ACGGA 4 cut(s) 1682, 2864, 3454, 5400
Van91I CCANNNNNTGG 1 cut(s) 596
VpaK11BI GGWCC 7 cut(s) 1132, 2681, 2984, 3827, 4259, 4556, 5324
VspI ATTAAT 1 cut(s) 3909
XbaI TCTAGA 5 cut(s) 1231, 1447, 1888, 1895, 4517
XceI RCATGY 6 cut(s) 1616, 1808, 2082, 2114, 4394, 5670
XcmI CCANNNNNNNNNTGG 2 cut(s) 2144, 2804
XmiI GTMKAC 2 cut(s) 2210, 3122
XmnI GAANNNNTTC 2 cut(s) 354, 517
ZrmI AGTACT 3 cut(s) 3608, 5004, 5059
Zsp2I ATGCAT 4 cut(s) 747, 1939, 2446, 5077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.