Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000362.1

Orthogroup ID

OG0002656

Physical Location & Seq

Genomic Coordinates Reverse (-)

20689 .. 23241

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000362.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

atgtatatatggtttcccattgacataggctcagggaaactacaggaatgggtggcacttgacagcaaagacgataagccaccaaaaatacgtgttgctcgccttcttaccccctcccttgaaggaacaaggaaaaggcggagagaagcaatggcagattacgcttggtctgttggagacaaagttgatgcctggatacaaaacagctggtgggaaggtgttgtgactgaaaaaaacaagaaagatgaaactatactaaaagtccactttccagctcaaggggaaacatcacatgttaaagcttggcatcttcggccttctctgatttggaaggatggggaatgggttgaatggtccagtgtgcggaatgacggctcttccatggaggatggcttgccgcaggaaaagcgaatcaaattgggcagttctacagtggaaggaaaagggaaggataagactttaaaaagcaatgttcttgattcaggaaaacctgaagagccaagtttgctgaatttgtctgcaaatgaaaaggtatttaatataggtaaaaataccaggattgagaataagcttgatggagccagaacaaatcggacagggttgcagaaggaaggatcagtaaaatttggtattccgaagcccaaaagaaaatttatggaagtcagcaagcattatgtggccaatcagactagtaaggttaacgagtctaatgagtcggtgaaatttgcgaaatatttgatgccacaatcatcaggtttccgtgcattgaaaaatacatctaaatttgatacaaaggacaaagagggggccgataacaagctaaggggttttagatctgaaaagcagcgaagtatgtcggataaaacagttcctcagaaggacaacttttcaatagatttagtttctgctgcggatggctccagtaagatggaccatacaagaaaggtcaaagactctgtaagacaagctgagggtttatctggcaagcgcaacatatttgagacgggatcaggttatagctcagacggaagagcacagggcgcagccatgttttcttcacgaactccgtcgtcagatttacctccatccaagaaggtagccactacaactgctaaatccgaacggggaaataaaggaaattttgcaccagttgttggaaagttgggtaaaattgaggagggcaaaggtacaagtagtaatcctgtaaggtcaacttcagaagcagtcgagcctcgtagatcaaatcgcagaattcagccaacatcaagactattagaaggactgcaaagttcgttgagcatttcaaagattccttccgtttcgcatgagaagcccagaagtcagaatagaaatggttctagagggagtaaccatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

459

Amino Acids

51.01

Weight (kDa)

9.92

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17330 AT4G17330 AT4G17330
fragaria_vesca	FvH4_5g19090 FvH4_5g19090 FvH4_5g19090
malus_domestica	MD04G1062800.v1.1 MD06G1057100.v1.1
prunus_persica	Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1
pyrus_communis	pycom04g05620 pycom04g05630 pycom04g05650 pycom06g04780 pycom06g04790
rosa_chinensis	RchiOBHm_Chr7g0203541
rosa_laevigata	RLG00000003521
rosa_multiflora	Rmu_co8304519.1_g000001 Rmu_co8320585.1_g000001 Rmu_sc0007812.1_g000001 Rmu_sc0010675.1_g000010 Rmu_sc0021549.1_g000001 Rmu_sc0028511.1_g000001 Rmu_ssc0000362.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253720
rosa_rugosa	Rorug07G0076800 Rorug07G0076800 Rorug07G0076800 Rorug07G0076800
rosa_samantha	Rh7AG206400 Rh7BG206000 Rh7CG218900 Rh7DG213600
rosa_wichuraiana	Rw7G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1154
AciI	CCGC	4 cut(s)	139, 364, 398, 911
AclWI	GGATC	2 cut(s)	622, 1015
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	7 cut(s)	511, 623, 650, 722, 782, 1138, 1251
AcuI	CTGAAG	2 cut(s)	513, 1200
AfaI	GTAC	1 cut(s)	1189
AfiI	CCNNNNNNNGG	3 cut(s)	278, 363, 1154
AflIII	ACRYGT	2 cut(s)	91, 292
AgsI	TTSAA	5 cut(s)	122, 350, 769, 891, 1305
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	2 cut(s)	191, 554
AluBI	AGCT	7 cut(s)	207, 275, 302, 571, 820, 968, 1020
AluI	AGCT	7 cut(s)	207, 275, 302, 571, 820, 968, 1020
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	2 cut(s)	171, 995
AlwI	GGATC	2 cut(s)	622, 1015
AoxI	GGCC	3 cut(s)	314, 678, 807
ApeKI	GCWGC	3 cut(s)	844, 908, 1043
ApoI	RAATTY	7 cut(s)	511, 623, 650, 722, 782, 1138, 1251
Asp700I	GAANNNNTTC	1 cut(s)	1354
AspLEI	GCGC	2 cut(s)	990, 1043
AspS9I	GGNCC	3 cut(s)	354, 807, 931
AsuHPI	GGTGA	1 cut(s)	730
AvaII	GGWCC	2 cut(s)	354, 931
BalI	TGGCCA	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	1036
BbvCI	CCTCAGC	1 cut(s)	969
BbvI	GCAGC	3 cut(s)	856, 895, 1055
BccI	CCATC	6 cut(s)	329, 383, 569, 908, 922, 1093
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	193, 556
BciVI	GTATCC	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	171, 995
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	2 cut(s)	690, 1359
BfmI	CTRYAG	2 cut(s)	41, 429
BfuI	GTATCC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	833
BisI	GCNGC	4 cut(s)	398, 845, 909, 1044
BlsI	GCNGC	4 cut(s)	399, 846, 910, 1045
Bme1390I	CCNGG	2 cut(s)	193, 556
Bme18I	GGWCC	2 cut(s)	354, 931
BmgT120I	GGNCC	3 cut(s)	354, 807, 931
BmiI	GGNNCC	3 cut(s)	580, 808, 919
BmrFI	CCNGG	2 cut(s)	193, 556
BmsI	GCATC	3 cut(s)	178, 316, 729
BpmI	CTGGAG	1 cut(s)	904
Bpu10I	CCTNAGC	3 cut(s)	31, 821, 969
BpuEI	CTTGAG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 363, 1154
Bse1I	ACTGG	3 cut(s)	357, 921, 1148
Bse3DI	GCAATG	2 cut(s)	156, 475
BseBI	CCWGG	2 cut(s)	193, 556
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	4 cut(s)	340, 394, 919, 1085
BseLI	CCNNNNNNNGG	3 cut(s)	278, 363, 1154
BseMI	GCAATG	2 cut(s)	156, 475
BseMII	CTCAG	4 cut(s)	45, 887, 960, 1035
BseNI	ACTGG	3 cut(s)	357, 921, 1148
BseRI	GAGGAG	1 cut(s)	1190
BseXI	GCAGC	3 cut(s)	856, 895, 1055
BshFI	GGCC	3 cut(s)	316, 680, 809
BsiHKAI	GWGCWC	1 cut(s)	1036
BslI	CCNNNNNNNGG	3 cut(s)	278, 363, 1154
BsmAI	GTCTC	2 cut(s)	171, 995
BsmBI	CGTCTC	1 cut(s)	995
BsnI	GGCC	3 cut(s)	316, 680, 809
Bsp1286I	GDGCHC	1 cut(s)	1036
Bsp143I	GATC	4 cut(s)	614, 833, 1007, 1238
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	4 cut(s)	139, 364, 398, 911
BspANI	GGCC	3 cut(s)	316, 680, 809
BspCNI	CTCAG	4 cut(s)	44, 886, 961, 1034
BspLI	GGNNCC	3 cut(s)	580, 808, 919
BspPI	GGATC	2 cut(s)	622, 1015
BspQI	GCTCTTC	3 cut(s)	382, 489, 1024
BsrDI	GCAATG	2 cut(s)	156, 475
BsrI	ACTGG	3 cut(s)	357, 921, 1148
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	614, 833, 1007, 1238
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	193, 556
Bst4CI	ACNGT	2 cut(s)	433, 868
Bst6I	CTCTTC	3 cut(s)	382, 489, 1024
BstBAI	YACGTR	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	100, 395, 668, 986
BstDEI	CTNAG	5 cut(s)	31, 821, 873, 969, 1021
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	4 cut(s)	340, 394, 919, 1085
BstHHI	GCGC	2 cut(s)	990, 1043
BstKTI	GATC	4 cut(s)	617, 836, 1010, 1241
BstMAI	GTCTC	2 cut(s)	171, 995
BstMBI	GATC	4 cut(s)	614, 833, 1007, 1238
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 313, 406, 505, 1040, 1330
BstNI	CCWGG	2 cut(s)	193, 556
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	191, 554
BstSFI	CTRYAG	2 cut(s)	41, 429
BstV1I	GCAGC	3 cut(s)	856, 895, 1055
BstX2I	RGATCY	1 cut(s)	833
BstXI	CCANNNNNNTGG	1 cut(s)	928
BstYI	RGATCY	1 cut(s)	833
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	316, 680, 809
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	4 cut(s)	340, 394, 919, 1085
BtsIMutI	CAGTG	2 cut(s)	364, 438
Cac8I	GCNNGC	4 cut(s)	100, 395, 668, 986
CfoI	GCGC	2 cut(s)	990, 1043
Cfr13I	GGNCC	3 cut(s)	354, 807, 931
Csp6I	GTAC	1 cut(s)	1188
CviAII	CATG	5 cut(s)	293, 382, 1048, 1325, 1373
CviQI	GTAC	1 cut(s)	1188
DdeI	CTNAG	5 cut(s)	31, 821, 873, 969, 1021
DpnI	GATC	4 cut(s)	616, 835, 1009, 1240
DpnII	GATC	4 cut(s)	614, 833, 1007, 1238
DraI	TTTAAA	1 cut(s)	462
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	3 cut(s)	382, 489, 1024
EarI	CTCTTC	3 cut(s)	382, 489, 1024
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	354, 931
Eco57I	CTGAAG	2 cut(s)	513, 1200
EcoRI	GAATTC	1 cut(s)	1251
EcoRII	CCWGG	2 cut(s)	191, 554
EcoT14I	CCWWGG	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	995
FaeI	CATG	5 cut(s)	296, 385, 1051, 1328, 1376
FalI	AAGNNNNNCTT	4 cut(s)	869, 901, 1198, 1230
FatI	CATG	5 cut(s)	292, 381, 1047, 1324, 1372
Fnu4HI	GCNGC	4 cut(s)	398, 845, 909, 1044
FokI	GGATG	4 cut(s)	347, 401, 926, 1072
Fsp4HI	GCNGC	4 cut(s)	398, 845, 909, 1044
FspBI	CTAG	2 cut(s)	690, 1359
GlaI	GCGC	2 cut(s)	989, 1042
GluI	GCNGC	4 cut(s)	398, 845, 909, 1044
GsuI	CTGGAG	1 cut(s)	904
HaeIII	GGCC	3 cut(s)	316, 680, 809
HhaI	GCGC	2 cut(s)	990, 1043
Hin1II	CATG	5 cut(s)	296, 385, 1051, 1328, 1376
Hin6I	GCGC	2 cut(s)	988, 1041
HinP1I	GCGC	2 cut(s)	988, 1041
HincII	GTYRAC	2 cut(s)	700, 1212
HindII	GTYRAC	2 cut(s)	700, 1212
HindIII	AAGCTT	2 cut(s)	300, 569
HinfI	GANTC	6 cut(s)	411, 479, 704, 713, 953, 1309
HpaI	GTTAAC	1 cut(s)	700
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	3 cut(s)	265, 700, 1212
Hpy188III	TCNNGA	5 cut(s)	476, 483, 1059, 1266, 1359
Hpy8I	GTNNAC	3 cut(s)	265, 700, 1212
Hpy99I	CGWCG	1 cut(s)	1072
HpyCH4III	ACNGT	2 cut(s)	433, 868
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	521, 604, 764, 1145, 1285
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 313, 406, 505, 1040, 1330
HpyF3I	CTNAG	5 cut(s)	31, 821, 873, 969, 1021
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	5 cut(s)	296, 385, 1051, 1328, 1376
HspAI	GCGC	2 cut(s)	988, 1041
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	4 cut(s)	614, 833, 1007, 1238
LguI	GCTCTTC	3 cut(s)	382, 489, 1024
LmnI	GCTCC	2 cut(s)	578, 923
Lsp1109I	GCAGC	3 cut(s)	856, 895, 1055
LweI	GCATC	3 cut(s)	178, 316, 729
MaeI	CTAG	2 cut(s)	690, 1359
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	223, 1367
MalI	GATC	4 cut(s)	616, 835, 1009, 1240
MboI	GATC	4 cut(s)	614, 833, 1007, 1238
MboII	GAAGA	5 cut(s)	302, 369, 506, 1041, 1047
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	1 cut(s)	1036
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	9 cut(s)	416, 511, 623, 650, 722, 782, 1138, 1170, 1251
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	3 cut(s)	713, 722, 947
MmeI	TCCRAC	3 cut(s)	154, 837, 1135
Mox20I	TGGCCA	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	1354
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	4 cut(s)	297, 461, 537, 699
Msp20I	TGGCCA	1 cut(s)	680
MspA1I	CMGCKG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	193, 556
MvaI	CCWGG	2 cut(s)	193, 556
MwoI	GCNNNNNNNGC	6 cut(s)	161, 313, 406, 505, 1040, 1330
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	4 cut(s)	614, 833, 1007, 1238
NlaIII	CATG	5 cut(s)	296, 385, 1051, 1328, 1376
NlaIV	GGNNCC	3 cut(s)	580, 808, 919
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	296
PciI	ACATGT	1 cut(s)	292
PciSI	GCTCTTC	3 cut(s)	382, 489, 1024
PdmI	GAANNNNTTC	1 cut(s)	1354
PfeI	GAWTC	3 cut(s)	411, 479, 1309
PflMI	CCANNNNNTGG	1 cut(s)	1154
PkrI	GCNGC	4 cut(s)	399, 846, 910, 1045
PleI	GAGTC	3 cut(s)	712, 721, 947
PpsI	GAGTC	3 cut(s)	712, 721, 947
Ppu21I	YACGTR	1 cut(s)	92
PscI	ACATGT	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	191, 554
PspGI	CCWGG	2 cut(s)	191, 554
PspN4I	GGNNCC	3 cut(s)	580, 808, 919
PspPI	GGNCC	3 cut(s)	354, 807, 931
PsuI	RGATCY	1 cut(s)	833
PvuII	CAGCTG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	1189
RsaNI	GTAC	1 cut(s)	1188
SapI	GCTCTTC	3 cut(s)	382, 489, 1024
SaqAI	TTAA	4 cut(s)	297, 461, 537, 699
SatI	GCNGC	4 cut(s)	398, 845, 909, 1044
Sau3AI	GATC	4 cut(s)	614, 833, 1007, 1238
Sau96I	GGNCC	3 cut(s)	354, 807, 931
SchI	GAGTC	3 cut(s)	713, 722, 947
ScrFI	CCNGG	2 cut(s)	193, 556
SduI	GDGCHC	1 cut(s)	1036
SfaNI	GCATC	3 cut(s)	178, 316, 729
SfcI	CTRYAG	2 cut(s)	41, 429
SinI	GGWCC	2 cut(s)	354, 931
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	9 cut(s)	416, 511, 623, 650, 722, 782, 1138, 1170, 1251
SsiI	CCGC	4 cut(s)	139, 364, 398, 911
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	2 cut(s)	690, 1359
StyD4I	CCNGG	2 cut(s)	191, 554
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	433, 868
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	1227
TasI	AATT	9 cut(s)	416, 511, 623, 650, 722, 782, 1138, 1170, 1251
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	3 cut(s)	411, 479, 1309
Tru1I	TTAA	4 cut(s)	297, 461, 537, 699
Tru9I	TTAA	4 cut(s)	297, 461, 537, 699
TscAI	CASTG	2 cut(s)	364, 438
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	844, 908, 1043
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	261, 540
TspGWI	ACGGA	4 cut(s)	749, 1041, 1056, 1306
TspRI	CASTG	2 cut(s)	364, 438
Van91I	CCANNNNNTGG	1 cut(s)	1154
VpaK11BI	GGWCC	2 cut(s)	354, 931
XapI	RAATTY	7 cut(s)	511, 623, 650, 722, 782, 1138, 1251
XbaI	TCTAGA	1 cut(s)	1358
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	1354
XspI	CTAG	2 cut(s)	690, 1359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.