Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010675.1

Orthogroup ID

OG0002656

Physical Location & Seq

Genomic Coordinates Forward (+)

58911 .. 60005

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010675.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggagtatgatgacaatgattttcaaagccagaatcttcaattagctggtgaagggagcaccaattgtcctccagttttacagccatatggtcttcccaaatttgattttgatgacagccttcaggggcatttgaggtttgatagtttggttgaaactgaggtttttcttggcattgagagtagcgaagctaacaactggattgaggatttctctcgtgggagtagtgggatagagtttagttcaagtgcagtagaatcgtgctctatatcaaggcggaacaatgtttggtctgaggccacgtcctcagaatctgttgaaatgctattaaaatctgttgggcaggaagagataattcccgctcagactatcttggaggaatcagatgcctgtaaggaagtgggttgcataaaacagatggagactaatttgaaaaatgatgataacattctcgccgaaacaggggatgttagagatctacattctactttactgctagatgaaactgccggaaacctttctggcttagataatgttggagatcagcctcggcttgaggatgcttcacaaactcaggaagttgaattaccggttggtggaaattcaagtgttttggatccaaattctgtcagtgatcgggataggctgcctgtaactacagggagcctgactgatgataaaggcaaggatgtgaataatatggaatttgataatttagttgattatcctccagataaaaaaatgcatgaaaattcatctgcttcagagatgcaagttgataatatgatgacttctgtgcgaagtattattacaagcagtgatgagttgaataatcaagatgttccacatcatatagtggatattactgaagagaatccaggcagtcatgatgtggcaagcatagatattcaatgtaggaatgatttggacaaacctcattgtttagcttcagaggtggagtctggaaaaaaagaaattgcaaatgaagatactgttattgatgtgcaggaagcgtctaaaattatgctgcaaggggattctattttacatacaatgggtggatgcagtgataaggaatgtcctggagttcttact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

365

Amino Acids

39.89

Weight (kDa)

4.13

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17330 AT4G17330 AT4G17330
fragaria_vesca	FvH4_5g19090 FvH4_5g19090 FvH4_5g19090
malus_domestica	MD04G1062800.v1.1 MD06G1057100.v1.1
prunus_persica	Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1
pyrus_communis	pycom04g05620 pycom04g05630 pycom04g05650 pycom06g04780 pycom06g04790
rosa_chinensis	RchiOBHm_Chr7g0203541
rosa_laevigata	RLG00000003521
rosa_multiflora	Rmu_co8304519.1_g000001 Rmu_co8320585.1_g000001 Rmu_sc0007812.1_g000001 Rmu_sc0010675.1_g000010 Rmu_sc0021549.1_g000001 Rmu_sc0028511.1_g000001 Rmu_ssc0000362.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253720
rosa_rugosa	Rorug07G0076800 Rorug07G0076800 Rorug07G0076800 Rorug07G0076800
rosa_samantha	Rh7AG206400 Rh7BG206000 Rh7CG218900 Rh7DG213600
rosa_wichuraiana	Rw7G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	362
AciI	CCGC	2 cut(s)	277, 360
AclWI	GGATC	2 cut(s)	611, 624
AcsI	RAATTY	5 cut(s)	101, 601, 622, 704, 751
AcuI	CTGAAG	4 cut(s)	107, 747, 888, 933
AfiI	CCNNNNNNNGG	2 cut(s)	462, 596
AgeI	ACCGGT	1 cut(s)	589
AjiI	CACGTC	1 cut(s)	303
AjnI	CCWGG	2 cut(s)	877, 1081
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	3 cut(s)	47, 191, 947
AluI	AGCT	3 cut(s)	47, 191, 947
Alw21I	GWGCWC	2 cut(s)	62, 266
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	611, 624
AlwNI	CAGNNNCTG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	646, 1027
ApoI	RAATTY	5 cut(s)	101, 601, 622, 704, 751
AsiGI	ACCGGT	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	4 cut(s)	570, 602, 793, 825
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	62, 266
BbvI	GCAGC	2 cut(s)	633, 1014
BccI	CCATC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciT130I	CCWGG	2 cut(s)	879, 1083
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	1 cut(s)	657
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	2 cut(s)	647, 1028
BlsI	GCNGC	2 cut(s)	648, 1029
Bme1390I	CCNGG	2 cut(s)	879, 1083
BmgBI	CACGTC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	618, 665
BmrFI	CCNGG	2 cut(s)	879, 1083
BmsI	GCATC	4 cut(s)	376, 550, 759, 1052
BpiI	GAAGAC	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpmI	CTGGAG	2 cut(s)	57, 714
BpuEI	CTTGAG	1 cut(s)	575
BsaJI	CCNNGG	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 596
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	74, 203
BseBI	CCWGG	2 cut(s)	879, 1083
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	4 cut(s)	472, 565, 694, 1067
BseLI	CCNNNNNNNGG	2 cut(s)	462, 596
BseMII	CTCAG	5 cut(s)	150, 285, 321, 377, 587
BseNI	ACTGG	2 cut(s)	74, 203
BseXI	GCAGC	2 cut(s)	633, 1014
BsgI	GTGCAG	2 cut(s)	270, 1025
BshFI	GGCC	1 cut(s)	299
BshTI	ACCGGT	1 cut(s)	589
BsiHKAI	GWGCWC	2 cut(s)	62, 266
BsiSI	CCGG	2 cut(s)	510, 590
BslI	CCNNNNNNNGG	2 cut(s)	462, 596
BsmAI	GTCTC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	62, 266
Bsp143I	GATC	4 cut(s)	475, 541, 616, 634
BspACI	CCGC	2 cut(s)	277, 360
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	5 cut(s)	151, 286, 320, 376, 586
BspHI	TCATGA	1 cut(s)	886
BspLI	GGNNCC	2 cut(s)	618, 665
BspPI	GGATC	2 cut(s)	611, 624
BsrBI	CCGCTC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	74, 203
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	4 cut(s)	475, 541, 616, 634
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	879, 1083
Bst4CI	ACNGT	1 cut(s)	994
Bst6I	CTCTTC	2 cut(s)	342, 864
BstC8I	GCNNGC	1 cut(s)	898
BstDEI	CTNAG	6 cut(s)	159, 294, 307, 363, 526, 573
BstF5I	GGATG	4 cut(s)	472, 565, 694, 1067
BstKTI	GATC	4 cut(s)	478, 544, 619, 637
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	475, 541, 616, 634
BstNI	CCWGG	2 cut(s)	879, 1083
BstSCI	CCNGG	2 cut(s)	877, 1081
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	2 cut(s)	633, 1014
BstV2I	GAAGAC	1 cut(s)	86
BstX2I	RGATCY	2 cut(s)	475, 616
BstYI	RGATCY	2 cut(s)	475, 616
BsuRI	GGCC	1 cut(s)	299
BtrI	CACGTC	1 cut(s)	303
BtsCI	GGATG	4 cut(s)	472, 565, 694, 1067
BtsI	GCAGTG	2 cut(s)	823, 1072
BtsIMutI	CAGTG	3 cut(s)	637, 823, 1072
Cac8I	GCNNGC	1 cut(s)	898
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	589
CseI	GACGC	1 cut(s)	1002
CspAI	ACCGGT	1 cut(s)	589
CviAII	CATG	2 cut(s)	746, 887
DdeI	CTNAG	6 cut(s)	159, 294, 307, 363, 526, 573
DpnI	GATC	4 cut(s)	477, 543, 618, 636
DpnII	GATC	4 cut(s)	475, 541, 616, 634
Eam1104I	CTCTTC	2 cut(s)	342, 864
EarI	CTCTTC	2 cut(s)	342, 864
EciI	GGCGGA	1 cut(s)	292
Eco57I	CTGAAG	4 cut(s)	107, 747, 888, 933
EcoRII	CCWGG	2 cut(s)	877, 1081
EcoT22I	ATGCAT	1 cut(s)	747
FaeI	CATG	2 cut(s)	749, 890
FatI	CATG	2 cut(s)	745, 886
FauI	CCCGC	1 cut(s)	367
FauNDI	CATATG	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	647, 1028
FokI	GGATG	4 cut(s)	479, 572, 701, 1074
Fsp4HI	GCNGC	2 cut(s)	647, 1028
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	2 cut(s)	647, 1028
GsuI	CTGGAG	2 cut(s)	57, 714
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	510, 590
HgaI	GACGC	1 cut(s)	1002
Hin1II	CATG	2 cut(s)	749, 890
HinfI	GANTC	7 cut(s)	34, 257, 311, 380, 874, 959, 1037
HpaII	CCGG	2 cut(s)	510, 590
HphI	GGTGA	1 cut(s)	62
Hpy188I	TCNGA	6 cut(s)	295, 310, 366, 385, 766, 952
Hpy188III	TCNNGA	6 cut(s)	575, 638, 731, 836, 887, 963
HpyAV	CCTTC	2 cut(s)	47, 131
HpyCH4III	ACNGT	1 cut(s)	994
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	8 cut(s)	251, 408, 745, 772, 980, 1006, 1030, 1065
HpyF3I	CTNAG	6 cut(s)	159, 294, 307, 363, 526, 573
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	749, 890
Kzo9I	GATC	4 cut(s)	475, 541, 616, 634
LmnI	GCTCC	2 cut(s)	57, 663
Lsp1109I	GCAGC	2 cut(s)	633, 1014
LweI	GCATC	4 cut(s)	376, 550, 759, 1052
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	4 cut(s)	477, 543, 618, 636
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	4 cut(s)	475, 541, 616, 634
MboII	GAAGA	5 cut(s)	29, 86, 359, 881, 998
MfeI	CAATTG	1 cut(s)	64
MflI	RGATCY	2 cut(s)	475, 616
MhlI	GDGCHC	2 cut(s)	62, 266
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	1 cut(s)	517
Mph1103I	ATGCAT	1 cut(s)	747
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	1 cut(s)	329
MspI	CCGG	2 cut(s)	510, 590
MspR9I	CCNGG	2 cut(s)	879, 1083
MunI	CAATTG	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	879, 1083
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	4 cut(s)	475, 541, 616, 634
NlaIII	CATG	2 cut(s)	749, 890
NlaIV	GGNNCC	2 cut(s)	618, 665
NmeAIII	GCCGAG	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	747
PagI	TCATGA	1 cut(s)	886
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	6 cut(s)	34, 257, 311, 380, 874, 1037
PfoI	TCCNGGA	1 cut(s)	1081
PinAI	ACCGGT	1 cut(s)	589
PkrI	GCNGC	2 cut(s)	648, 1029
PleI	GAGTC	1 cut(s)	967
PpsI	GAGTC	1 cut(s)	967
Psp6I	CCWGG	2 cut(s)	877, 1081
PspGI	CCWGG	2 cut(s)	877, 1081
PspN4I	GGNNCC	2 cut(s)	618, 665
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	475, 616
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	647, 1028
Sau3AI	GATC	4 cut(s)	475, 541, 616, 634
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	2 cut(s)	879, 1083
SduI	GDGCHC	2 cut(s)	62, 266
SetI	ASST	9 cut(s)	49, 140, 165, 193, 305, 519, 937, 949, 957
SfaNI	GCATC	4 cut(s)	376, 550, 759, 1052
SfcI	CTRYAG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SsiI	CCGC	2 cut(s)	277, 360
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	877, 1081
TaaI	ACNGT	1 cut(s)	994
TaiI	ACGT	1 cut(s)	305
TfiI	GAWTC	6 cut(s)	34, 257, 311, 380, 874, 1037
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	3 cut(s)	637, 823, 1072
TseI	GCWGC	2 cut(s)	646, 1027
TspDTI	ATGAA	4 cut(s)	516, 744, 762, 999
TspRI	CASTG	3 cut(s)	637, 823, 1072
XapI	RAATTY	5 cut(s)	101, 601, 622, 704, 751
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	1 cut(s)	497
Zsp2I	ATGCAT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.