Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002656

Physical Location & Seq

Genomic Coordinates Forward (+)

5420248 .. 5421835

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTCATAGTGGATACACCCATGGATTATGATGACAATGATTTTCAAAGCCACAATGTTCATTTAGCTGGTGAAGGGACTAATAATTGTCCTCCAGTTTTACAGCCATATGCTCTTCCCAAGTTTGATTTTGATGATAGCCTTCAAGGGCATTTGAGGTTTGATAGTTTGGTTGAAACCGAGGTTTTTCTGGGCATTGAGAGTAACGAACCTAACCACTGGATTGAGGATTTCTCTCGTGGGAGTAGTGGGATAGAGTTTAGTTCCACTGCAGTAGAATCTTGCTCTATATCAAGGCGCAACAATGTTTGGTCTGAGGCCACTTCCTCAGAATCTGTTGAAATGCTATTAAAATCTGTTGGGCAGGAAGAAATTATTCCCTCTGAGACAATTTTTGAGGAATCAGATGCCTGTAAGGAACTGAATTGCTTAACTGAGCAGATGGAGCCTAACTTGGATGATGATCATAAGACTCTTTCCCAAACGGGGAATGTTACAGTTCTACGGCCTACATTACAGCAGGAGGAGACTTCCGAAAACCTTTCTAGCTTAAAGGATGTAGGAGTAGATCAGCTTTGTGTTGATGATTCACAAACCCATGAAGGTAAATTATTAGTTGATGGAAATTCAAATAACTTGGAACCAAATGATCTTGGTGGAAAGGACACCCTGCAGGTAAGTGAAGGGAGTCCTTTTGCTGAAGGGAGTCCTTTTGCTGATGAACCTCCAGATAAAAAAGTAGATTCCTCTGCTTCAGGAATGCAAGTTGATAATATGATATCTGTGGAAAATATTAATACAAGTGATAAGTTGAGTAACAAAGATGTCCAAGATAATTTAAAAGATATCACTGAAGAGGATCCAGACGGTCATGTGTTGAGCATAGAGGCTCAACATGTGAATGAAAAAATAGTTGAAAAGGCTACCTGTTATTTGGAAAACCCTCATTGTTCATCGTTTGAGGTGGAGTCTGTGGAAGGAGGAATTGCTAATCAAGAAAATGTTATTAGTGTGGAGGAACCGTTGGATATGATACTGCAAGAGGATTCTGACTTACATGCCCTGGGTGAATGCAGTGACAGGGAAATCTCTGGAGTTGATGCTGACACCAACAAATGTGAAAATGTGATCTTGTTTAAAGGCATAGATACTGGTGGTCGATCAATCAGAACCAAACACGCAGAGCTTATCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

399

Amino Acids

43.76

Weight (kDa)

4.15

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17330 AT4G17330 AT4G17330
fragaria_vesca	FvH4_5g19090 FvH4_5g19090 FvH4_5g19090
malus_domestica	MD04G1062800.v1.1 MD06G1057100.v1.1
prunus_persica	Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1
pyrus_communis	pycom04g05620 pycom04g05630 pycom04g05650 pycom06g04780 pycom06g04790
rosa_chinensis	RchiOBHm_Chr7g0203541
rosa_laevigata	RLG00000003521
rosa_multiflora	Rmu_co8304519.1_g000001 Rmu_co8320585.1_g000001 Rmu_sc0007812.1_g000001 Rmu_sc0010675.1_g000010 Rmu_sc0021549.1_g000001 Rmu_sc0028511.1_g000001 Rmu_ssc0000362.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253720
rosa_rugosa	Rorug07G0076800 Rorug07G0076800 Rorug07G0076800 Rorug07G0076800
rosa_samantha	Rh7AG206400 Rh7BG206000 Rh7CG218900 Rh7DG213600
rosa_wichuraiana	Rw7G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	664
AclWI	GGATC	2 cut(s)	854, 867
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	3 cut(s)	720, 738, 873
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	895
AgsI	TTSAA	6 cut(s)	47, 146, 176, 341, 630, 917
AjnI	CCWGG	1 cut(s)	1062
AluBI	AGCT	4 cut(s)	68, 549, 574, 1186
AluI	AGCT	4 cut(s)	68, 549, 574, 1186
Alw26I	GTCTC	2 cut(s)	380, 521
AlwI	GGATC	2 cut(s)	854, 867
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	2 cut(s)	318, 506
ApoI	RAATTY	1 cut(s)	625
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	300
AsuHPI	GGTGA	3 cut(s)	83, 1079, 1183
BamHI	GGATCC	1 cut(s)	859
BauI	CACGAG	1 cut(s)	237
BccI	CCATC	2 cut(s)	436, 614
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	1 cut(s)	1064
BciVI	GTATCC	1 cut(s)	7
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	380, 521
BfaI	CTAG	2 cut(s)	546, 1195
BfmI	CTRYAG	2 cut(s)	270, 671
BfuAI	ACCTGC	1 cut(s)	664
BfuI	GTATCC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	1064
BmiI	GGNNCC	4 cut(s)	447, 642, 861, 1020
BmrFI	CCNGG	1 cut(s)	1064
BmsI	GCATC	2 cut(s)	397, 1090
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	3 cut(s)	78, 711, 1113
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	21, 180, 1062, 1063
BsaXI	ACNNNNNCTCC	2 cut(s)	1007, 1037
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	3 cut(s)	95, 224, 1156
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	1064
BseDI	CCNNGG	4 cut(s)	21, 180, 1062, 1063
BseGI	GGATG	2 cut(s)	463, 562
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMII	CTCAG	4 cut(s)	306, 342, 375, 426
BseNI	ACTGG	3 cut(s)	95, 224, 1156
BseRI	GAGGAG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	320, 508
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	2 cut(s)	380, 521
BsmFI	GGGAC	1 cut(s)	91
BsmI	GAATGC	2 cut(s)	765, 1076
BsnI	GGCC	2 cut(s)	320, 508
Bsp143I	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	2 cut(s)	320, 508
BspCNI	CTCAG	4 cut(s)	307, 341, 376, 427
BspLI	GGNNCC	4 cut(s)	447, 642, 861, 1020
BspMAI	CTGCAG	2 cut(s)	274, 675
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	2 cut(s)	854, 867
BspQI	GCTCTTC	1 cut(s)	120
BsrI	ACTGG	3 cut(s)	95, 224, 1156
BssECI	CCNNGG	4 cut(s)	21, 180, 1062, 1063
BssMI	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
BssSI	CACGAG	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	1064
Bst4CI	ACNGT	3 cut(s)	499, 869, 1023
Bst6I	CTCTTC	2 cut(s)	120, 849
BstDEI	CTNAG	4 cut(s)	315, 328, 384, 435
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	463, 562
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	6 cut(s)	466, 571, 652, 862, 1131, 1163
BstMAI	GTCTC	2 cut(s)	380, 521
BstMBI	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	1 cut(s)	1064
BstNSI	RCATGY	2 cut(s)	899, 1061
BstSCI	CCNGG	1 cut(s)	1062
BstSFI	CTRYAG	2 cut(s)	270, 671
BstX2I	RGATCY	1 cut(s)	859
BstYI	RGATCY	1 cut(s)	859
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	320, 508
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	463, 562
BtsI	GCAGTG	2 cut(s)	267, 1081
BtsIMutI	CAGTG	4 cut(s)	217, 267, 849, 1081
BveI	ACCTGC	1 cut(s)	664
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	300
CviAII	CATG	5 cut(s)	22, 599, 872, 896, 1058
DdeI	CTNAG	4 cut(s)	315, 328, 384, 435
DpnI	GATC	6 cut(s)	465, 570, 651, 861, 1130, 1162
DpnII	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
DraI	TTTAAA	2 cut(s)	840, 1138
Eam1104I	CTCTTC	2 cut(s)	120, 849
EarI	CTCTTC	2 cut(s)	120, 849
Eco130I	CCWWGG	1 cut(s)	21
Eco32I	GATATC	2 cut(s)	780, 847
Eco57I	CTGAAG	3 cut(s)	720, 738, 873
EcoRII	CCWGG	1 cut(s)	1062
EcoRV	GATATC	2 cut(s)	780, 847
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	5 cut(s)	25, 602, 875, 899, 1061
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	5 cut(s)	21, 598, 871, 895, 1057
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	463
FokI	GGATG	2 cut(s)	470, 569
FspBI	CTAG	2 cut(s)	546, 1195
GlaI	GCGC	1 cut(s)	299
GsuI	CTGGAG	3 cut(s)	78, 711, 1113
HaeIII	GGCC	2 cut(s)	320, 508
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	25, 602, 875, 899, 1061
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HphI	GGTGA	3 cut(s)	83, 1079, 1183
Hpy188I	TCNGA	7 cut(s)	316, 331, 385, 406, 535, 1051, 1169
Hpy188III	TCNNGA	5 cut(s)	728, 756, 863, 995, 1092
HpyAV	CCTTC	6 cut(s)	68, 152, 596, 677, 695, 971
HpyCH4III	ACNGT	3 cut(s)	499, 869, 1023
HpyCH4V	TGCA	5 cut(s)	272, 673, 763, 1039, 1074
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	4 cut(s)	315, 328, 384, 435
Hsp92II	CATG	5 cut(s)	25, 602, 875, 899, 1061
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	445
LweI	GCATC	2 cut(s)	397, 1090
MaeI	CTAG	2 cut(s)	546, 1195
MaeIII	GTNAC	4 cut(s)	203, 493, 815, 1076
MalI	GATC	6 cut(s)	465, 570, 651, 861, 1130, 1162
MboI	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
MboII	GAAGA	3 cut(s)	107, 380, 866
MflI	RGATCY	1 cut(s)	859
MluCI	AATT	8 cut(s)	85, 372, 390, 424, 608, 625, 835, 984
MlyI	GAGTC	4 cut(s)	466, 697, 715, 977
MmeI	TCCRAC	1 cut(s)	1005
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	6 cut(s)	350, 431, 551, 795, 839, 1137
MslI	CAYNNNNRTG	1 cut(s)	900
MspR9I	CCNGG	1 cut(s)	1064
Mva1269I	GAATGC	2 cut(s)	765, 1076
MvaI	CCWGG	1 cut(s)	1064
MwoI	GCNNNNNNNGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
NlaIII	CATG	5 cut(s)	25, 602, 875, 899, 1061
NlaIV	GGNNCC	4 cut(s)	447, 642, 861, 1020
NmuCI	GTSAC	1 cut(s)	1076
NspI	RCATGY	2 cut(s)	899, 1061
PasI	CCCWGGG	1 cut(s)	1063
PciI	ACATGT	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	120
PctI	GAATGC	2 cut(s)	765, 1076
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	6 cut(s)	278, 332, 401, 587, 743, 1046
PleI	GAGTC	4 cut(s)	466, 696, 714, 976
PpsI	GAGTC	4 cut(s)	466, 696, 714, 976
PscI	ACATGT	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	1062
PspGI	CCWGG	1 cut(s)	1062
PspN4I	GGNNCC	4 cut(s)	447, 642, 861, 1020
PstI	CTGCAG	2 cut(s)	274, 675
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	859
RseI	CAYNNNNRTG	1 cut(s)	900
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	6 cut(s)	350, 431, 551, 795, 839, 1137
Sau3AI	GATC	6 cut(s)	463, 568, 649, 859, 1128, 1160
SbfI	CCTGCAGG	1 cut(s)	675
SchI	GAGTC	4 cut(s)	466, 697, 715, 977
ScrFI	CCNGG	1 cut(s)	1064
SdaI	CCTGCAGG	1 cut(s)	675
SfaNI	GCATC	2 cut(s)	397, 1090
SfcI	CTRYAG	2 cut(s)	270, 671
SmiMI	CAYNNNNRTG	1 cut(s)	900
Sse8387I	CCTGCAGG	1 cut(s)	675
Sse9I	AATT	8 cut(s)	85, 372, 390, 424, 608, 625, 835, 984
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	2 cut(s)	546, 1195
StyD4I	CCNGG	1 cut(s)	1062
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	499, 869, 1023
TaqI	TCGA	1 cut(s)	1159
TasI	AATT	8 cut(s)	85, 372, 390, 424, 608, 625, 835, 984
TfiI	GAWTC	6 cut(s)	278, 332, 401, 587, 743, 1046
Tru1I	TTAA	6 cut(s)	350, 431, 551, 795, 839, 1137
Tru9I	TTAA	6 cut(s)	350, 431, 551, 795, 839, 1137
TscAI	CASTG	4 cut(s)	224, 274, 856, 1081
TseFI	GTSAC	1 cut(s)	1076
Tsp45I	GTSAC	1 cut(s)	1076
TspDTI	ATGAA	5 cut(s)	50, 615, 735, 918, 942
TspRI	CASTG	4 cut(s)	224, 274, 856, 1081
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	1 cut(s)	625
XceI	RCATGY	2 cut(s)	899, 1061
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	546, 1195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.