Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8304519.1

Orthogroup ID

OG0002656

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 903

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8304519.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgctgcaaggggattctattttacatacaatgggtggatgcagtgataaggaatgtcctggagttcttactgagaccaatagatgtgaagatctggtagtgtctaaggaccccgatgttggtggtgatcaatccacaatgacctacacaaatgatgctgggtatggaattgaggttaggaacaaccttggtgaaatttcttccagtctagatcctattctgaaaggggaatctgatttacagacagtggacagatgcactgacagggaatgccctgaagttcttgatgacaccaacaaatgtgaagatgttgttatctcttttaaagacacagatactggtggtgttccagctaagtctgacaaaaatgacagtggttatggcactgaggatcggaacagcaatactggagttttgtctggtctagatcctaccctcaaatgggattctaacttgtgtacaatggatgtatgtactgtcaaggaatcccctgaagttccttctgtctcgttgaaagctacagacactggtggtgatcaatctaaattacacacacctgacttatcaccaatggcctatgggaatgacactgggcatgcagttgaacttggcaacagtgtttctgcctgtgtaagccctaccttgagaacggataatgatttacatacagtggatgcaagtagtgacaggaaatgccctgatgttcctgtggagaccactaaatgtgaagacatagtgttgtccaaaggcacagatactaccggtgatcaatctaacataagcccacatgttttatcacctgtagcctacaaaagtgatactgtgtatgcagatgaggtcgggaacagcaattctggattttcgtccagtctagactctagattgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

296

Amino Acids

31.4

Weight (kDa)

4.26

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17330 AT4G17330 AT4G17330
fragaria_vesca	FvH4_5g19090 FvH4_5g19090 FvH4_5g19090
malus_domestica	MD04G1062800.v1.1 MD06G1057100.v1.1
prunus_persica	Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1 Prupe.5G068000_v2.0.a1
pyrus_communis	pycom04g05620 pycom04g05630 pycom04g05650 pycom06g04780 pycom06g04790
rosa_chinensis	RchiOBHm_Chr7g0203541
rosa_laevigata	RLG00000003521
rosa_multiflora	Rmu_co8304519.1_g000001 Rmu_co8320585.1_g000001 Rmu_sc0007812.1_g000001 Rmu_sc0010675.1_g000010 Rmu_sc0021549.1_g000001 Rmu_sc0028511.1_g000001 Rmu_ssc0000362.1_g000008
rosa_roxburghii	Rroxscaffold_3G00253720
rosa_rugosa	Rorug07G0076800 Rorug07G0076800 Rorug07G0076800 Rorug07G0076800
rosa_samantha	Rh7AG206400 Rh7BG206000 Rh7CG218900 Rh7DG213600
rosa_wichuraiana	Rw7G018020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	206, 399, 422
AcsI	RAATTY	1 cut(s)	195
AcuI	CTGAAG	2 cut(s)	297, 513
AfaI	GTAC	2 cut(s)	460, 475
AfiI	CCNNNNNNNGG	3 cut(s)	119, 441, 442
AflIII	ACRYGT	1 cut(s)	787
AgeI	ACCGGT	1 cut(s)	761
AgsI	TTSAA	3 cut(s)	514, 605, 886
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	353, 518
AluI	AGCT	2 cut(s)	353, 518
Alw26I	GTCTC	3 cut(s)	68, 511, 707
AlwI	GGATC	3 cut(s)	206, 399, 422
AlwNI	CAGNNNCTG	2 cut(s)	338, 527
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	195
AsiGI	ACCGGT	1 cut(s)	761
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	6 cut(s)	137, 203, 545, 558, 776, 789
AvaII	GGWCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	735
BciT130I	CCWGG	1 cut(s)	60
BclI	TGATCA	3 cut(s)	127, 535, 766
BcoDI	GTCTC	3 cut(s)	68, 511, 707
BfaI	CTAG	4 cut(s)	209, 425, 872, 879
BfmI	CTRYAG	2 cut(s)	519, 801
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	600
BmsI	GCATC	4 cut(s)	29, 145, 245, 664
BmuI	ACTGGG	1 cut(s)	600
BpiI	GAAGAC	1 cut(s)	735
BpmI	CTGGAG	2 cut(s)	81, 429
BpuEI	CTTGAG	1 cut(s)	664
BsaI	GGTCTC	2 cut(s)	68, 707
BsaJI	CCNNGG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	761
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 441, 442
Bse118I	RCCGGY	1 cut(s)	761
Bse1I	ACTGG	6 cut(s)	204, 343, 412, 532, 595, 867
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	3 cut(s)	44, 472, 679
BseLI	CCNNNNNNNGG	3 cut(s)	119, 441, 442
BseMII	CTCAG	2 cut(s)	63, 378
BseNI	ACTGG	6 cut(s)	204, 343, 412, 532, 595, 867
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	575
BshTI	ACCGGT	1 cut(s)	761
BsiSI	CCGG	1 cut(s)	762
BslI	CCNNNNNNNGG	3 cut(s)	119, 441, 442
BsmAI	GTCTC	3 cut(s)	68, 511, 707
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	575
Bso31I	GGTCTC	2 cut(s)	68, 707
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	2 cut(s)	64, 379
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	3 cut(s)	206, 399, 422
BspTNI	GGTCTC	2 cut(s)	68, 707
BsrFI	RCCGGY	1 cut(s)	761
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	6 cut(s)	204, 343, 412, 532, 595, 867
BssAI	RCCGGY	1 cut(s)	761
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	6 cut(s)	247, 374, 478, 617, 670, 823
BstAUI	TGTACA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	4 cut(s)	72, 105, 354, 387
BstF5I	GGATG	3 cut(s)	44, 472, 679
BstKTI	GATC	7 cut(s)	94, 130, 214, 394, 430, 538, 769
BstMAI	GTCTC	3 cut(s)	68, 511, 707
BstMBI	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	2 cut(s)	599, 791
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	519, 801
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	3 cut(s)	91, 211, 427
BstYI	RGATCY	3 cut(s)	91, 211, 427
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	3 cut(s)	44, 472, 679
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	9 cut(s)	49, 252, 258, 379, 384, 525, 588, 622, 675
Cac8I	GCNNGC	1 cut(s)	597
CaiI	CAGNNNCTG	2 cut(s)	338, 527
Cfr10I	RCCGGY	1 cut(s)	761
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	459, 474
CspAI	ACCGGT	1 cut(s)	761
CviAII	CATG	2 cut(s)	596, 788
CviJI	RGCY	6 cut(s)	353, 518, 575, 636, 783, 806
CviKI_1	RGCY	6 cut(s)	353, 518, 575, 636, 783, 806
CviQI	GTAC	2 cut(s)	459, 474
DdeI	CTNAG	4 cut(s)	72, 105, 354, 387
DpnI	GATC	7 cut(s)	93, 129, 213, 393, 429, 537, 768
DpnII	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
DraI	TTTAAA	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	187
Eco31I	GGTCTC	2 cut(s)	68, 707
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	297, 513
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	187
FaeI	CATG	2 cut(s)	599, 791
FatI	CATG	2 cut(s)	595, 787
FbaI	TGATCA	3 cut(s)	127, 535, 766
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	3 cut(s)	51, 479, 686
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	4 cut(s)	209, 425, 872, 879
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	81, 429
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	1 cut(s)	762
Hin1II	CATG	2 cut(s)	599, 791
HinfI	GANTC	5 cut(s)	14, 230, 446, 485, 875
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	6 cut(s)	137, 203, 545, 558, 776, 789
Hpy166II	GTNNAC	2 cut(s)	250, 459
Hpy188I	TCNGA	4 cut(s)	222, 235, 361, 396
Hpy188III	TCNNGA	7 cut(s)	209, 284, 425, 841, 855, 872, 879
Hpy8I	GTNNAC	2 cut(s)	250, 459
HpyAV	CCTTC	1 cut(s)	510
HpyCH4III	ACNGT	6 cut(s)	247, 374, 478, 617, 670, 823
HpyCH4V	TGCA	6 cut(s)	7, 42, 258, 599, 677, 830
HpyF3I	CTNAG	4 cut(s)	72, 105, 354, 387
Hsp92II	CATG	2 cut(s)	599, 791
Ksp22I	TGATCA	3 cut(s)	127, 535, 766
Kzo9I	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
LweI	GCATC	4 cut(s)	29, 145, 245, 664
MaeI	CTAG	4 cut(s)	209, 425, 872, 879
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	7 cut(s)	93, 129, 213, 393, 429, 537, 768
MboI	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
MboII	GAAGA	4 cut(s)	101, 192, 317, 740
MflI	RGATCY	3 cut(s)	91, 211, 427
MluCI	AATT	4 cut(s)	168, 195, 545, 850
MlyI	GAGTC	1 cut(s)	869
MnlI	CCTC	4 cut(s)	166, 382, 446, 829
MseI	TTAA	1 cut(s)	324
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	60
NdeII	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
NlaIII	CATG	2 cut(s)	599, 791
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	683
NspI	RCATGY	2 cut(s)	599, 791
PaeI	GCATGC	1 cut(s)	599
PciI	ACATGT	1 cut(s)	787
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	4 cut(s)	14, 230, 446, 485
PfoI	TCCNGGA	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	761
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	869
PpuMI	RGGWCCY	1 cut(s)	109
PscI	ACATGT	1 cut(s)	787
Psp5II	RGGWCCY	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	58
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	109
PspPPI	RGGWCCY	1 cut(s)	109
PstNI	CAGNNNCTG	2 cut(s)	338, 527
PsuI	RGATCY	3 cut(s)	91, 211, 427
RsaI	GTAC	2 cut(s)	460, 475
RsaNI	GTAC	2 cut(s)	459, 474
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	7 cut(s)	91, 127, 211, 391, 427, 535, 766
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	869
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	9 cut(s)	146, 177, 189, 355, 520, 559, 644, 802, 840
SfaNI	GCATC	4 cut(s)	29, 145, 245, 664
SfcI	CTRYAG	2 cut(s)	519, 801
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	4 cut(s)	168, 195, 545, 850
SspMI	CTAG	4 cut(s)	209, 425, 872, 879
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	6 cut(s)	247, 374, 478, 617, 670, 823
TasI	AATT	4 cut(s)	168, 195, 545, 850
TatI	WGTACW	2 cut(s)	458, 473
TfiI	GAWTC	4 cut(s)	14, 230, 446, 485
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	9 cut(s)	49, 252, 265, 379, 391, 532, 595, 622, 675
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	683
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	9 cut(s)	49, 252, 265, 379, 391, 532, 595, 622, 675
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	1 cut(s)	195
XbaI	TCTAGA	4 cut(s)	208, 424, 871, 878
XceI	RCATGY	2 cut(s)	599, 791
XspI	CTAG	4 cut(s)	209, 425, 872, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.