Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Forward (+)

11455391 .. 11455879

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCCAAGGTAAAGACTAACCGAATCAAGCACCCAGAAGGCTGGGAACTGATTGAGCCTACTCTTCATGAGCTAGAAGCAAAGATGAAAGAAGCTGATAATGACACCCATGATGGTAAGAGAATATGTGAGACTTTATGGCCTATTTTCAAAATAACACATCAAAAGAGCCGCTACATTTTTGATCTTTACCATCGGAGAAAAGAAATACCCAAGGAATTGTATGAATTCTGCTTGGACCAACGTCACGCAGACAGCAAGCTAATTGCAAAGTGGAAGAAGCCTGGTTACGAACGCCTCTGCTGTTTAGGGTGCATGCAACCTGGGGATCATAATTTTGCGACTACCTGCGTCTGCCGAGTGCCCAAGCATCTAAGAGAGGAGAAAGTCATAGAATGCGTCCACTGTGGCTGCAAGGGCTGTGCCAGTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

146

Amino Acids

17.01

Weight (kDa)

8.46

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	1 - 143	5.8e-62	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	283, 322
AluBI	AGCT	3 cut(s)	73, 95, 262
AluI	AGCT	3 cut(s)	73, 95, 262
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	366
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	2 cut(s)	107, 201
BciT130I	CCWGG	2 cut(s)	285, 324
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	2 cut(s)	172, 412
BlsI	GCNGC	2 cut(s)	173, 413
Bme1390I	CCNGG	2 cut(s)	285, 324
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	285, 324
BmsI	GCATC	1 cut(s)	379
BoxI	GACNNNNGTC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	6, 213, 323
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	285, 324
BseDI	CCNNGG	3 cut(s)	6, 213, 323
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	184, 328
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	6, 213, 323
BssMI	GATC	2 cut(s)	184, 328
BssT1I	CCWWGG	2 cut(s)	6, 213
Bst2UI	CCWGG	2 cut(s)	285, 324
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	260, 317
BstDEI	CTNAG	1 cut(s)	374
BstKTI	GATC	2 cut(s)	187, 331
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	184, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	2 cut(s)	285, 324
BstNSI	RCATGY	1 cut(s)	319
BstPAI	GACNNNNGTC	1 cut(s)	243
BstSCI	CCNGG	2 cut(s)	283, 322
BstSLI	GKGCMC	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	403, 433
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	260, 317
CciI	TCATGA	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	2 cut(s)	340, 388
CviAII	CATG	3 cut(s)	68, 110, 316
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	2 cut(s)	186, 330
DpnII	GATC	2 cut(s)	184, 328
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	6, 213
Eco47I	GGWCC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	283, 322
EcoT14I	CCWWGG	2 cut(s)	6, 213
ErhI	CCWWGG	2 cut(s)	6, 213
FaeI	CATG	3 cut(s)	71, 113, 319
FaiI	YATR	8 cut(s)	69, 111, 127, 139, 225, 317, 333, 392
FatI	CATG	3 cut(s)	67, 109, 315
Fnu4HI	GCNGC	2 cut(s)	172, 412
Fsp4HI	GCNGC	2 cut(s)	172, 412
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	2 cut(s)	172, 412
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	142
HgaI	GACGC	2 cut(s)	340, 388
Hin1II	CATG	3 cut(s)	71, 113, 319
HinfI	GANTC	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	269, 315, 319, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	71, 113, 319
Kzo9I	GATC	2 cut(s)	184, 328
LpnPI	CCDG	7 cut(s)	28, 48, 270, 297, 309, 336, 361
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	245, 287
MalI	GATC	2 cut(s)	186, 330
MboI	GATC	2 cut(s)	184, 328
MboII	GAAGA	2 cut(s)	56, 289
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	4 cut(s)	218, 227, 264, 334
MnlI	CCTC	2 cut(s)	308, 373
MspR9I	CCNGG	2 cut(s)	285, 324
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	2 cut(s)	285, 324
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeII	GATC	2 cut(s)	184, 328
NlaIII	CATG	3 cut(s)	71, 113, 319
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	67
PctI	GAATGC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	173, 413
PshAI	GACNNNNGTC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	283, 322
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	283, 322
PspPI	GGNCC	1 cut(s)	238
SatI	GCNGC	2 cut(s)	172, 412
Sau3AI	GATC	2 cut(s)	184, 328
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	285, 324
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	7 cut(s)	12, 75, 97, 247, 264, 325, 350
SfaNI	GCATC	1 cut(s)	379
SinI	GGWCC	1 cut(s)	238
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	4 cut(s)	218, 227, 264, 334
SsiI	CCGC	1 cut(s)	172
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	2 cut(s)	283, 322
StyI	CCWWGG	2 cut(s)	6, 213
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	1 cut(s)	247
TasI	AATT	4 cut(s)	218, 227, 264, 334
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	24
TscAI	CASTG	2 cut(s)	410, 433
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	56, 101, 240
TspRI	CASTG	2 cut(s)	410, 433
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.