Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

11973360 .. 11977166

Gene Structure 3807 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGAAGGTAAAGACTAATCGAGTTACCTACCCAGAAGGCTGGGAACTAATCGAGCCTACTCTTCGTGAACTGCAAGCAAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAAAGGAAATGTGAAACCTTATGGCCCATTTTCAAGATAGCACATCAAAAGAGTCGCTACATTTTTGACCTTTACCATCGCCGAAAAGAAATTTCCAAGGAATTGTATGAGTTCTGCCTGGACCAAGGTTATGCTGACCGCAATCTAATTGCAAAGTGGAAGAAGCCGGGTTATGAACGCCTTTGCTGTTTAAGGTGCATGCAGCCTCGGGATCACAACTTTGCAACCACATGTGTCTGCCGAGTGCCCAAGCATCTGAGGGAGGAGAAGGTTATAGAGTGCGTGCACTGTGGCTGCAGGGGCTGTGCCAGTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

146

Amino Acids

17.24

Weight (kDa)

8.86

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	1 - 143	3.1e-65	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	405
Alw44I	GTGCAC	1 cut(s)	401
AlwI	GGATC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	319, 411
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	141, 238
AsuC2I	CCSGG	1 cut(s)	285
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	2 cut(s)	366, 405
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	331, 398
BccI	CCATC	2 cut(s)	107, 201
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	2 cut(s)	320, 412
BlsI	GCNGC	2 cut(s)	321, 413
Bme1390I	CCNGG	2 cut(s)	236, 285
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	141, 238
BmrFI	CCNGG	2 cut(s)	236, 285
BmsI	GCATC	1 cut(s)	379
BpuMI	CCSGG	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	213, 241, 323
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	3 cut(s)	213, 241, 323
BseMII	CTCAG	2 cut(s)	87, 365
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	2 cut(s)	366, 405
BseXI	GCAGC	2 cut(s)	331, 398
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	284
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	2 cut(s)	366, 405
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	88, 366
BspHI	TCATGA	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	416
BspPI	GGATC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	213, 241, 323
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	2 cut(s)	213, 241
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	78, 317, 401
BstDEI	CTNAG	2 cut(s)	96, 374
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	2 cut(s)	319, 351
BstSCI	CCNGG	2 cut(s)	234, 283
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	2 cut(s)	366, 405
BstV1I	GCAGC	2 cut(s)	331, 398
BstXI	CCANNNNNNTGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	403, 433
Cac8I	GCNNGC	3 cut(s)	78, 317, 401
CaiI	CAGNNNCTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	141, 238
CviAII	CATG	3 cut(s)	110, 316, 348
CviJI	RGCY	8 cut(s)	42, 58, 95, 142, 283, 322, 411, 420
CviKI_1	RGCY	8 cut(s)	42, 58, 95, 142, 283, 322, 411, 420
DdeI	CTNAG	2 cut(s)	96, 374
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	213, 241
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	213, 241
ErhI	CCWWGG	2 cut(s)	213, 241
FaeI	CATG	3 cut(s)	113, 319, 351
FaiI	YATR	8 cut(s)	111, 139, 225, 249, 291, 317, 349, 392
FatI	CATG	3 cut(s)	109, 315, 347
Fnu4HI	GCNGC	2 cut(s)	320, 412
Fsp4HI	GCNGC	2 cut(s)	320, 412
GluI	GCNGC	2 cut(s)	320, 412
GsaI	CCCAGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	3 cut(s)	113, 319, 351
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	71, 403
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	4 cut(s)	68, 110, 151, 326
Hpy8I	GTNNAC	2 cut(s)	71, 403
HpyAV	CCTTC	2 cut(s)	32, 379
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	7 cut(s)	76, 269, 315, 319, 341, 403, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	2 cut(s)	96, 374
Hsp92II	CATG	3 cut(s)	113, 319, 351
Kzo9I	GATC	1 cut(s)	328
LpnPI	CCDG	6 cut(s)	28, 48, 221, 248, 297, 400
Lsp1109I	GCAGC	2 cut(s)	331, 398
LweI	GCATC	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	56, 289
MhlI	GDGCHC	2 cut(s)	366, 405
MluCI	AATT	3 cut(s)	207, 218, 264
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	3 cut(s)	333, 369, 373
MseI	TTAA	1 cut(s)	308
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	236, 285
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	417
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	113, 319, 351
NmeAIII	GCCGAG	1 cut(s)	383
NspI	RCATGY	2 cut(s)	319, 351
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	109
PciI	ACATGT	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	321, 413
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	234
PspPI	GGNCC	2 cut(s)	141, 238
PstI	CTGCAG	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	420
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	2 cut(s)	320, 412
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	141, 238
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	236, 285
SduI	GDGCHC	2 cut(s)	366, 405
SetI	ASST	8 cut(s)	12, 32, 97, 137, 189, 247, 314, 390
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	238
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	207, 218, 264
SsiI	CCGC	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	234, 283
StyI	CCWWGG	2 cut(s)	213, 241
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	2 cut(s)	22, 54
TasI	AATT	3 cut(s)	207, 218, 264
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	2 cut(s)	410, 433
TseI	GCWGC	2 cut(s)	319, 411
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	410, 433
VneI	GTGCAC	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	2 cut(s)	319, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.