Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000388.1

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

283990 .. 285152

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000388.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgcctaaggtcaagactaatcgagtcaactacccagaaggttgggaactaatcgagcctactcttcgcgaactgcaagcaaagatgagagaagctgagaatgatactcatgatggtaagagaaaatgtgaaaccttatggcctattttcaaaatagcacatcaaaagagccgctacatttttgacctttaccatcggagaaaagaaatttccaaggaattgtatgagttctgcctggaccaaggttatgctgaccgcaatctaattgcaaagtggaagaagcctggttatgaacgcctctgctgtttgaggtgcatgcagcctcgggatcacaactttgccaccacatgcgtctgccgagtgcccaagcatctgagggaggagaaggttatagagtgtgtgcattgtggctgcaggggctgtgccagtggagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

145

Amino Acids

17.25

Weight (kDa)

8.86

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	2 cut(s)	172, 256
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	234, 283
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AlwI	GGATC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	420
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	319, 411
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	331, 398
BccI	CCATC	2 cut(s)	107, 201
BciT130I	CCWGG	2 cut(s)	236, 285
BfmI	CTRYAG	1 cut(s)	412
BisI	GCNGC	3 cut(s)	172, 320, 412
BlsI	GCNGC	3 cut(s)	173, 321, 413
Bme1390I	CCNGG	2 cut(s)	236, 285
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	236, 285
BmsI	GCATC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	213, 241, 323
Bse1I	ACTGG	1 cut(s)	426
Bse21I	CCTNAGG	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	236, 285
BseDI	CCNNGG	3 cut(s)	213, 241, 323
BseMII	CTCAG	2 cut(s)	87, 365
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	331, 398
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	324
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	328
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	2 cut(s)	172, 256
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	88, 366
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	109
BspMAI	CTGCAG	1 cut(s)	416
BspPI	GGATC	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	3 cut(s)	213, 241, 323
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	2 cut(s)	213, 241
Bst2UI	CCWGG	2 cut(s)	236, 285
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	78, 317
BstDEI	CTNAG	3 cut(s)	6, 96, 374
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	2 cut(s)	236, 285
BstNSI	RCATGY	2 cut(s)	319, 351
BstSCI	CCNGG	2 cut(s)	234, 283
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	366
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	331, 398
BstXI	CCANNNNNNTGG	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	433
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	78, 317
CaiI	CAGNNNCTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	340
CviAII	CATG	3 cut(s)	110, 316, 348
CviJI	RGCY	8 cut(s)	58, 95, 142, 171, 283, 322, 411, 420
CviKI_1	RGCY	8 cut(s)	58, 95, 142, 171, 283, 322, 411, 420
DdeI	CTNAG	3 cut(s)	6, 96, 374
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	213, 241
Eco47I	GGWCC	1 cut(s)	238
Eco81I	CCTNAGG	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	234, 283
EcoT14I	CCWWGG	2 cut(s)	213, 241
ErhI	CCWWGG	2 cut(s)	213, 241
FaeI	CATG	3 cut(s)	113, 319, 351
FaiI	YATR	8 cut(s)	111, 139, 225, 249, 291, 317, 349, 392
FatI	CATG	3 cut(s)	109, 315, 347
Fnu4HI	GCNGC	3 cut(s)	172, 320, 412
Fsp4HI	GCNGC	3 cut(s)	172, 320, 412
GluI	GCNGC	3 cut(s)	172, 320, 412
HaeIII	GGCC	1 cut(s)	142
HgaI	GACGC	1 cut(s)	340
Hin1II	CATG	3 cut(s)	113, 319, 351
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	198, 375
Hpy188III	TCNNGA	4 cut(s)	13, 68, 110, 326
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	32, 379
HpyCH4V	TGCA	6 cut(s)	76, 269, 315, 319, 403, 414
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	3 cut(s)	6, 96, 374
Hsp92II	CATG	3 cut(s)	113, 319, 351
Kzo9I	GATC	1 cut(s)	328
LpnPI	CCDG	6 cut(s)	48, 221, 248, 270, 297, 400
Lsp1109I	GCAGC	2 cut(s)	331, 398
LweI	GCATC	1 cut(s)	379
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	56, 289
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	3 cut(s)	207, 218, 264
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	5 cut(s)	303, 308, 333, 369, 373
MspR9I	CCNGG	2 cut(s)	236, 285
MvaI	CCWGG	2 cut(s)	236, 285
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	3 cut(s)	113, 319, 351
NmeAIII	GCCGAG	1 cut(s)	383
NruI	TCGCGA	1 cut(s)	69
NspI	RCATGY	2 cut(s)	319, 351
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	173, 321, 413
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	234, 283
PspGI	CCWGG	2 cut(s)	234, 283
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	420
RruI	TCGCGA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	172, 320, 412
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	2 cut(s)	236, 285
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	8 cut(s)	12, 43, 97, 137, 189, 247, 314, 390
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	1 cut(s)	238
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	207, 218, 264
SsiI	CCGC	2 cut(s)	172, 256
StyD4I	CCNGG	2 cut(s)	234, 283
StyI	CCWWGG	2 cut(s)	213, 241
TaqI	TCGA	2 cut(s)	22, 54
TasI	AATT	3 cut(s)	207, 218, 264
TauI	GCSGC	1 cut(s)	174
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	2 cut(s)	319, 411
TspDTI	ATGAA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	2 cut(s)	319, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.