Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Forward (+)

3618305 .. 3734900

Gene Structure 116596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3438 bp

ATGAGCACACAAAGTACCTCTGCATCTTTCCCCCCTTCAACTCCTCAGTGGAAATATGATGTCTTTCTGAGCTTTAGAGGTGATGACACTCGCAAGGCTTTTACAGACCATTTATACACTGCATTGGAACATCAAGGAATCATAACTTTCAGGGATGATCCTGAACTTCAAAAAGGGAAAGCTATTTCCCCAGCACTTTTTGCTGCAATTGGAGAATCGAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGTCGACATGGTGCTTGGATGAACTTGTGAAAATTCTTGAATGTATGAAAAAAAGAGAAGCTGTGCTGCCAATTTTCTATGATGTTGATCCCTCTGATGTACGAAAGCAAACAGGGAGTTTTAGACAAGCCTTTGCTAATCATGAAGAAAGATTTAGGAGTGACGAAGAGAAAGTGCGAAGGTGGAGAGATGCTTTAACTGAAGTGGCAAATTTTTCTGGGTGGAATTCAAAGGAATGGTATGAATCAAAACTCATTACAGATATTGTTGAAGATATATGTAAAAGATTGCAACCTACATCACACAGTTATGCAGACAGTCTAGTTGGAATTTACTCAAGATTGCATCGAGTTAATTTGCATTTAAGTATAGGGGTGGATGACGTCCGCTTCATTGGTATATGGGGAATGGGCGGGATTGGTAAGACTACTATGGTAAGAGTGGTGCATGAGAGAATCTCTCATGAATTTGAATTTAATTTCCTTCTTACGGATGTTAGAAACTCCTCCGTTGAAAAAGGTGGTTTACTTAATCTGCAAAAGCAACTTCTCTCTGGGATTGGGGCAAAAAAGATTGACATATTAGACCTTCAGGAAGGAGCCACCATTTTAAAGAGGTTATTACCTCACAAAAAAGTTCTTCTCATTCTTGATGATGTGAACCATTCAAGTCATTTAGAATATTTGGCAGGAAACCCAGAGTGGTTTGGTTCAGGGAGTAGAGTTCTGATCACAACTAGAAATGAGCATTTGTTGGTTGAACATGGAGTGGAGAGAAGATTGAAGGTCGAAGAATTAAATGATGATGATTCTCTTCAGCTTTTTAGCTTGAAAGCATTCAAAAGAGGTTATCCTGAAGAAGACTTTCTTGGTCTGTCTAAATCTGTTATAAATTATGCCAAAGGTCTTCCTTTAGCTCTTAAAGTACTGGGTTCTTTTTTGTATGGAAGAGGTCCAAGTGAATGGAACAGTGCACTGGGAAAACTGGCAAGAGTTTGTAACTCGGAAATCTTTGACATACTTAAAATAAGTTACGACAGTCTAGATTCTGAAGAGAAGAAAATATTCCTAGACATTGCATGTTTCTTTAATGGAGAGGACAAAGATCGAGTAACAAAAGTACTAACCAGTTTCGATTTTTCTGCAATTGTTGGAATAGAAGTGCTCATGGAAAGATCTCTCTTGATTGTTTCGCATGGAAGACTAAGGATGCATGATTTGCTCAGGAAAATGGGTCGTGAAATTGTCCACCTGCAATCTCCTAATGAGCCGGGTAGGCGCAGTAGGTTGTGGCTTCTTGAAGACATCAAACATGTCTTGACCAAAAATACTGGAACTGAAGCAATAGAAGGCATATTTGTGGACTCAAACAAGTTAGGAGTAGACGTGGACGTGACTCCAAAATCATTTTCAATGATGAACAAATTGAGATACCTGAAGATCGAGAGTGGGAACCTGTCTAAGGAACTTGAGTATCTTCCCAATAATTTACGGATTCTTGATTGGACGAGGTATCCGTTAAAATCTTTGCCGTCACATTTCAACCCTCGGAAGCTGCTCCAACTAAGCTTGTCTCATAGTTGTATTAAATATTTTCGGATAGGAACGGAGCCTTTATACAATTTGAAAATCATTAATCTGAGTCACTCTCGGAATCTTGTCAACACCTCAAACTTTAAAAGTATGCCACATCTCGAGTTTCTGTTTCTTGAAGGTTGTATAAAATTGTCTAAGGTTGACCCAGGAATTGGAGAGCTTAAAAGACTTACTGTGCTGCACTTGAAATATTGCAACAATCTGGTGGGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAATATCTCAATCTTTCTGGTTGCTCAAAGCTTCAGAAATTGCCAGATGAGTTGGGTCATGTTTCTTGTTTGGAGGTGCTTGATTTGAGTAGAACTGGCATGACAGAAGTGCCCTCCTTTATTGTTCTTTTGAAAAACCTCAAAAGATTATCTCTTGCTGGATGTAATTTACATCCGTCATCAACATTATGGAATGTGTTTTATCAGTTTTGGCGACGAAGAAATCAGTCAAATCACATTCCGGTAGGATTTTCGTTGTCTCGTTTGTCGGTTTTGCATTCATTAACTGAATTGAATGTAAGTGAGTGCAATCTTTCTGAATTGCCCAGTGATTTTGGATGCTTGTCTTCATTAAGATCATTAGATCTCAGCAGAAATCAATTCATTAGACTACCCGACAGCATTGGCCAACTCTCTAGACTTGAATCTCTTCAGTTGCATTGGTGCCGCAAGCTTCGGACATTACCAGAGCTTCCATCTCTTGCATCGGTAGACGCTAGCCACTGCATTTCATTAGATACTTTGGCCAATCAAATAGGACAATGTAATTCGGTGCTATTCGGATCTTTTGTTAACTGTTCGAAACTGGTGGAGAATGAAAGCACTGGGAGTATAGCAGTTGCATTGTTAACACGCTACCTTAAGAGTAAAGCATTTTCTGACCATAATAATAGATTTAACTGTATTGTTCCTGGAAATGAAATTCCAGAGTGGTACAATCACCGAAGTGTGGGGTCTTCGATAACCGTAGAGCTGCAACCAGGTTGGTTAAGTAACAAGTGGATGGGATTCGCCTGGTGTGTCGTTTTTAGATTCCTCAAACCACAGCTGCCTTGGACTGAGATGTTCTTTGATTGCGATCTTCGTGTCAATGGAAAACTCATGCCCTTCAATTTTCAATTTTTTGGGCAAAAGTGGGGAGCTCGAGAGTGGGGAGAGTGGAAAACTCTTGGCCTTAAACCTGTGTCAGATCACATTTGGTTGTCGAATTTGCACCGTGATTTTTGCAAACATGAGTGGCAGGATATCTACTATCGGCTTGAATTCTCAATTCAAATCCACTACGTCGATTTGACTAAGGACCGACTGATACATATGGAAGTTGTGGAAGTGAAGAAGTGTGGGGTCCGTATGATATATGAGGAAGATGCAGAGCAGCCTTGGGAAACATTATTGCAGCAGAGCAATGTTGGCAGTTCTACCAAGCGACGCCTTCAACACTATGATGATGATGATGACGACGACGACGATGCATCATCTAGTAGTGCAAGTCAAGCTCATCCAAAAAGAATGAAACAACTCCACCTTGACGGCGCAGGACCCAGTGGAACCCCTTATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

1145

Amino Acids

130.68

Weight (kDa)

7.93

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	18 - 195	1.7e-55	TIR domain
TIR_2	PF13676	21 - 127	9.7e-15	TIR domain
NB-ARC	PF00931	202 - 367	4.3e-20	NB-ARC domain
WHD_ROQ1	PF23282	436 - 505	3.2e-17	Disease resistance protein Roq1-like, winged-helix domain
LRR_13	PF23286	672 - 875	3.5e-06	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	693 - 757	2.7e-11	Leucine-rich repeat region
LRR_14	PF23598	782 - 866	6.9e-09	Leucine-rich repeat region
LRR_8	PF13855	792 - 847	1.5e-06	Leucine rich repeat
C-JID	PF20160	928 - 1083	1.3e-19	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1145
AarI	CACCTGC	1 cut(s)	1515
AatII	GACGTC	1 cut(s)	642
Acc36I	ACCTGC	1 cut(s)	1515
AccB1I	GGYRCC	1 cut(s)	2538
AccB7I	CCANNNNNTGG	1 cut(s)	2003
AccI	GTMKAC	3 cut(s)	260, 1638, 2586
AciI	CCGC	3 cut(s)	643, 669, 2542
AclWI	GGATC	3 cut(s)	152, 338, 2665
AcoI	YGGCCR	2 cut(s)	2500, 2619
AcsI	RAATTY	9 cut(s)	288, 466, 481, 585, 722, 728, 2796, 3082, 3137
AcuI	CTGAAG	9 cut(s)	477, 830, 1055, 1131, 1326, 1614, 1712, 2111, 2510
AcyI	GRCGYC	2 cut(s)	639, 3304
AfaI	GTAC	5 cut(s)	16, 357, 1182, 1377, 2810
AfiI	CCNNNNNNNGG	4 cut(s)	745, 1717, 2003, 2824
AflII	CTTAAG	1 cut(s)	2735
AflIII	ACRYGT	1 cut(s)	1567
AjiI	CACGTC	2 cut(s)	1642, 1648
AjnI	CCWGG	4 cut(s)	1996, 2785, 2854, 2888
AjuI	GAANNNNNNNTTGG	4 cut(s)	1107, 1139, 1648, 1680
AleI	CACNNNNGTG	1 cut(s)	2820
Alw21I	GWGCWC	4 cut(s)	8, 1231, 1422, 3019
Alw26I	GTCTC	2 cut(s)	1833, 2358
Alw44I	GTGCAC	1 cut(s)	1227
AlwI	GGATC	3 cut(s)	152, 338, 2665
Ama87I	CYCGRG	2 cut(s)	1949, 3018
AoxI	GGCC	3 cut(s)	2500, 2619, 3046
ApaLI	GTGCAC	1 cut(s)	1227
ApeKI	GCWGC	8 cut(s)	203, 322, 1810, 2029, 2848, 2923, 3250, 3271
ApoI	RAATTY	9 cut(s)	288, 466, 481, 585, 722, 728, 2796, 3082, 3137
AseI	ATTAAT	1 cut(s)	1890
Asp700I	GAANNNNTTC	4 cut(s)	1091, 1119, 1319, 2523
AspLEI	GCGC	2 cut(s)	1536, 3410
AspS9I	GGNCC	4 cut(s)	1208, 3175, 3220, 3413
AsuC2I	CCSGG	1 cut(s)	1527
AsuHPI	GGTGA	2 cut(s)	92, 2807
AsuII	TTCGAA	1 cut(s)	2675
AsuNHI	GCTAGC	1 cut(s)	2591
AvaI	CYCGRG	2 cut(s)	1949, 3018
AvaII	GGWCC	4 cut(s)	1208, 3175, 3220, 3413
BaeGI	GKGCMC	2 cut(s)	1231, 2208
BaeI	ACNNNNGTAYC	2 cut(s)	1712, 1745
BalI	TGGCCA	2 cut(s)	2502, 2621
BanI	GGYRCC	1 cut(s)	2538
BanII	GRGCYC	1 cut(s)	3019
BbsI	GAAGAC	7 cut(s)	1122, 1154, 1462, 1563, 2054, 2433, 2823
Bbv12I	GWGCWC	4 cut(s)	8, 1231, 1422, 3019
BbvI	GCAGC	8 cut(s)	190, 309, 1797, 2016, 2835, 2910, 3262, 3283
BccI	CCATC	2 cut(s)	2578, 2872
BceAI	ACGGC	2 cut(s)	1771, 3421
BcgI	CGANNNNNNTGC	4 cut(s)	1379, 1413, 3326, 3360
BciT130I	CCWGG	4 cut(s)	1998, 2787, 2856, 2890
BciVI	GTATCC	1 cut(s)	1779
BclI	TGATCA	1 cut(s)	984
BcnI	CCSGG	1 cut(s)	1527
BcoDI	GTCTC	2 cut(s)	1833, 2358
BfaI	CTAG	7 cut(s)	578, 993, 1298, 1325, 2511, 2592, 3354
BfrI	CTTAAG	1 cut(s)	2735
BfuAI	ACCTGC	1 cut(s)	1515
BfuI	GTATCC	1 cut(s)	1779
BglI	GCCNNNNNGGC	1 cut(s)	1531
BglII	AGATCT	2 cut(s)	1430, 2458
BisI	GCNGC	9 cut(s)	204, 323, 1811, 2030, 2542, 2849, 2924, 3251, 3272
BlsI	GCNGC	9 cut(s)	205, 324, 1812, 2031, 2543, 2850, 2925, 3252, 3273
BmcAI	AGTACT	2 cut(s)	1182, 1377
Bme1390I	CCNGG	5 cut(s)	1527, 1998, 2787, 2856, 2890
Bme18I	GGWCC	4 cut(s)	1208, 3175, 3220, 3413
BmeT110I	CYCGRG	2 cut(s)	1949, 3018
BmgBI	CACGTC	2 cut(s)	1642, 1648
BmgT120I	GGNCC	4 cut(s)	1208, 3175, 3220, 3413
BmiI	GGNNCC	7 cut(s)	856, 1709, 1866, 2540, 3221, 3415, 3424
BmrFI	CCNGG	5 cut(s)	1527, 1998, 2787, 2856, 2890
BmrI	ACTGGG	5 cut(s)	1193, 1241, 2415, 2709, 3411
BmtI	GCTAGC	1 cut(s)	2595
BmuI	ACTGGG	5 cut(s)	1193, 1241, 2415, 2709, 3411
BpiI	GAAGAC	7 cut(s)	1122, 1154, 1462, 1563, 2054, 2433, 2823
BplI	GAGNNNNNCTC	8 cut(s)	211, 243, 698, 730, 700, 732, 1888, 1920
Bpu10I	CCTNAGC	1 cut(s)	1478
Bpu14I	TTCGAA	1 cut(s)	2675
BpuEI	CTTGAG	2 cut(s)	577, 1745
BpuMI	CCSGG	1 cut(s)	1527
BsaBI	GATNNNNATC	2 cut(s)	342, 2952
BsaHI	GRCGYC	2 cut(s)	639, 3304
BsaJI	CCNNGG	4 cut(s)	1802, 1996, 2927, 3254
BsaWI	WCCGGW	1 cut(s)	2335
BsaXI	ACNNNNNCTCC	2 cut(s)	1626, 1656
Bsc4I	CCNNNNNNNGG	4 cut(s)	745, 1717, 2003, 2824
Bse3DI	GCAATG	2 cut(s)	1329, 3286
Bse8I	GATNNNNATC	2 cut(s)	342, 2952
BseBI	CCWGG	4 cut(s)	1998, 2787, 2856, 2890
BseDI	CCNNGG	4 cut(s)	1802, 1996, 2927, 3254
BseJI	GATNNNNATC	2 cut(s)	342, 2952
BseLI	CCNNNNNNNGG	4 cut(s)	745, 1717, 2003, 2824
BseMI	GCAATG	2 cut(s)	1329, 3286
BseMII	CTCAG	6 cut(s)	59, 59, 1492, 1886, 2476, 2925
BseRI	GAGGAG	2 cut(s)	33, 751
BseSI	GKGCMC	2 cut(s)	1231, 2208
BseXI	GCAGC	8 cut(s)	190, 309, 1797, 2016, 2835, 2910, 3262, 3283
BseYI	CCCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	2015
BshFI	GGCC	3 cut(s)	2502, 2621, 3048
BshNI	GGYRCC	1 cut(s)	2538
BsiHKAI	GWGCWC	4 cut(s)	8, 1231, 1422, 3019
BsiHKCI	CYCGRG	2 cut(s)	1949, 3018
BsiSI	CCGG	2 cut(s)	1526, 2336
BslI	CCNNNNNNNGG	4 cut(s)	745, 1717, 2003, 2824
BsmAI	GTCTC	2 cut(s)	1833, 2358
BsmI	GAATGC	2 cut(s)	1091, 2371
BsnI	GGCC	3 cut(s)	2502, 2621, 3048
BsoBI	CYCGRG	2 cut(s)	1949, 3018
Bsp119I	TTCGAA	1 cut(s)	2675
Bsp1286I	GDGCHC	5 cut(s)	8, 1231, 1422, 2208, 3019
BspACI	CCGC	3 cut(s)	643, 669, 2542
BspANI	GGCC	3 cut(s)	2502, 2621, 3048
BspCNI	CTCAG	6 cut(s)	58, 60, 1491, 1887, 2475, 2926
BspHI	TCATGA	3 cut(s)	397, 718, 3434
BspLI	GGNNCC	7 cut(s)	856, 1709, 1866, 2540, 3221, 3415, 3424
BspMI	ACCTGC	1 cut(s)	1515
BspOI	GCTAGC	1 cut(s)	2595
BspPI	GGATC	3 cut(s)	152, 338, 2665
BspT104I	TTCGAA	1 cut(s)	2675
BspT107I	GGYRCC	1 cut(s)	2538
BspTI	CTTAAG	1 cut(s)	2735
BsrDI	GCAATG	2 cut(s)	1329, 3286
BssECI	CCNNGG	4 cut(s)	1802, 1996, 2927, 3254
BssNI	GRCGYC	2 cut(s)	639, 3304
BssT1I	CCWWGG	2 cut(s)	2927, 3254
Bst2UI	CCWGG	4 cut(s)	1998, 2787, 2856, 2890
Bst4CI	ACNGT	9 cut(s)	563, 575, 1226, 1295, 2026, 2672, 2777, 2842, 3092
Bst6I	CTCTTC	5 cut(s)	417, 1074, 1198, 1302, 2529
BstACI	GRCGYC	2 cut(s)	639, 3304
BstAFI	CTTAAG	1 cut(s)	2735
BstAPI	GCANNNNNTGC	2 cut(s)	200, 1474
BstBI	TTCGAA	1 cut(s)	2675
BstC8I	GCNNGC	2 cut(s)	2546, 2593
BstENI	CCTNNNNNAGG	1 cut(s)	1715
BstHHI	GCGC	2 cut(s)	1536, 3410
BstMAI	GTCTC	2 cut(s)	1833, 2358
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 1474, 1531, 3285, 3368
BstNI	CCWGG	4 cut(s)	1998, 2787, 2856, 2890
BstNSI	RCATGY	2 cut(s)	1338, 1571
BstSCI	CCNGG	5 cut(s)	1525, 1996, 2785, 2854, 2888
BstSLI	GKGCMC	2 cut(s)	1231, 2208
BstV1I	GCAGC	8 cut(s)	190, 309, 1797, 2016, 2835, 2910, 3262, 3283
BstV2I	GAAGAC	7 cut(s)	1122, 1154, 1462, 1563, 2054, 2433, 2823
BstX2I	RGATCY	3 cut(s)	1430, 2458, 2657
BstXI	CCANNNNNNTGG	1 cut(s)	1218
BstYI	RGATCY	3 cut(s)	1430, 2458, 2657
BsuI	GTATCC	1 cut(s)	1779
BsuRI	GGCC	3 cut(s)	2502, 2621, 3048
BtrI	CACGTC	2 cut(s)	1642, 1648
BtsI	GCAGTG	3 cut(s)	117, 2077, 2596
BtsIMutI	CAGTG	9 cut(s)	53, 117, 1229, 1231, 2077, 2428, 2596, 2697, 3424
BveI	ACCTGC	1 cut(s)	1515
Cac8I	GCNNGC	2 cut(s)	2546, 2593
CciI	TCATGA	3 cut(s)	397, 718, 3434
CfoI	GCGC	2 cut(s)	1536, 3410
Cfr13I	GGNCC	4 cut(s)	1208, 3175, 3220, 3413
CseI	GACGC	2 cut(s)	2597, 3312
CsiI	ACCWGGT	1 cut(s)	2854
Csp6I	GTAC	5 cut(s)	15, 356, 1181, 1376, 2809
CviQI	GTAC	5 cut(s)	15, 356, 1181, 1376, 2809
DraI	TTTAAA	2 cut(s)	867, 1933
EaeI	YGGCCR	2 cut(s)	2500, 2619
Eam1104I	CTCTTC	5 cut(s)	417, 1074, 1198, 1302, 2529
EarI	CTCTTC	5 cut(s)	417, 1074, 1198, 1302, 2529
Ecl136II	GAGCTC	1 cut(s)	3017
Eco130I	CCWWGG	2 cut(s)	2927, 3254
Eco24I	GRGCYC	1 cut(s)	3019
Eco32I	GATATC	1 cut(s)	3121
Eco47I	GGWCC	4 cut(s)	1208, 3175, 3220, 3413
Eco53kI	GAGCTC	1 cut(s)	3017
Eco57I	CTGAAG	9 cut(s)	477, 830, 1055, 1131, 1326, 1614, 1712, 2111, 2510
Eco88I	CYCGRG	2 cut(s)	1949, 3018
EcoICRI	GAGCTC	1 cut(s)	3017
EcoNI	CCTNNNNNAGG	1 cut(s)	1715
EcoO109I	RGGNCCY	1 cut(s)	3413
EcoRI	GAATTC	2 cut(s)	481, 3137
EcoRII	CCWGG	4 cut(s)	1996, 2785, 2854, 2888
EcoRV	GATATC	1 cut(s)	3121
EcoT14I	CCWWGG	2 cut(s)	2927, 3254
EcoT22I	ATGCAT	3 cut(s)	256, 1470, 3349
EcoT38I	GRGCYC	1 cut(s)	3019
ErhI	CCWWGG	2 cut(s)	2927, 3254
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FauI	CCCGC	1 cut(s)	662
FauNDI	CATATG	1 cut(s)	3189
FbaI	TGATCA	1 cut(s)	984
FblI	GTMKAC	3 cut(s)	260, 1638, 2586
Fnu4HI	GCNGC	9 cut(s)	204, 323, 1811, 2030, 2542, 2849, 2924, 3251, 3272
FriOI	GRGCYC	1 cut(s)	3019
Fsp4HI	GCNGC	9 cut(s)	204, 323, 1811, 2030, 2542, 2849, 2924, 3251, 3272
FspBI	CTAG	7 cut(s)	578, 993, 1298, 1325, 2511, 2592, 3354
GlaI	GCGC	2 cut(s)	1535, 3409
GluI	GCNGC	9 cut(s)	204, 323, 1811, 2030, 2542, 2849, 2924, 3251, 3272
GsaI	CCCAGC	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	2502, 2621, 3048
HapII	CCGG	2 cut(s)	1526, 2336
HgaI	GACGC	2 cut(s)	2597, 3312
HhaI	GCGC	2 cut(s)	1536, 3410
Hin1I	GRCGYC	2 cut(s)	639, 3304
Hin6I	GCGC	2 cut(s)	1534, 3408
HinP1I	GCGC	2 cut(s)	1534, 3408
HincII	GTYRAC	5 cut(s)	261, 1918, 1993, 2668, 2724
HindII	GTYRAC	5 cut(s)	261, 1918, 1993, 2668, 2724
HindIII	AAGCTT	3 cut(s)	1822, 2123, 2546
HpaI	GTTAAC	2 cut(s)	2668, 2724
HpaII	CCGG	2 cut(s)	1526, 2336
HphI	GGTGA	2 cut(s)	92, 2807
Hpy99I	CGWCG	7 cut(s)	262, 2313, 3164, 3306, 3338, 3341, 3344
HpyCH4III	ACNGT	9 cut(s)	563, 575, 1226, 1295, 2026, 2672, 2777, 2842, 3092
HpyCH4IV	ACGT	4 cut(s)	639, 1641, 1647, 3159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 1474, 1531, 3285, 3368
HpySE526I	ACGT	4 cut(s)	639, 1641, 1647, 3159
Hsp92I	GRCGYC	2 cut(s)	639, 3304
HspAI	GCGC	2 cut(s)	1534, 3408
Ksp22I	TGATCA	1 cut(s)	984
KspAI	GTTAAC	2 cut(s)	2668, 2724
LmnI	GCTCC	4 cut(s)	854, 1818, 1864, 3014
Lsp1109I	GCAGC	8 cut(s)	190, 309, 1797, 2016, 2835, 2910, 3262, 3283
MabI	ACCWGGT	1 cut(s)	2854
MaeI	CTAG	7 cut(s)	578, 993, 1298, 1325, 2511, 2592, 3354
MaeII	ACGT	4 cut(s)	639, 1641, 1647, 3159
MaeIII	GTNAC	8 cut(s)	416, 1253, 1286, 1366, 1648, 1788, 1898, 2867
MfeI	CAATTG	2 cut(s)	207, 1401
MflI	RGATCY	3 cut(s)	1430, 2458, 2657
MhlI	GDGCHC	5 cut(s)	8, 1231, 1422, 2208, 3019
MlsI	TGGCCA	2 cut(s)	2502, 2621
MluNI	TGGCCA	2 cut(s)	2502, 2621
MlyI	GAGTC	3 cut(s)	1613, 1645, 1906
MmeI	TCCRAC	3 cut(s)	562, 1387, 1840
Mox20I	TGGCCA	2 cut(s)	2502, 2621
Mph1103I	ATGCAT	3 cut(s)	256, 1470, 3349
MroXI	GAANNNNTTC	4 cut(s)	1091, 1119, 1319, 2523
MscI	TGGCCA	2 cut(s)	2502, 2621
MslI	CAYNNNNRTG	4 cut(s)	564, 1613, 2820, 3318
Msp20I	TGGCCA	2 cut(s)	2502, 2621
MspA1I	CMGCKG	1 cut(s)	2923
MspCI	CTTAAG	1 cut(s)	2735
MspI	CCGG	2 cut(s)	1526, 2336
MspR9I	CCNGG	5 cut(s)	1527, 1998, 2787, 2856, 2890
MunI	CAATTG	2 cut(s)	207, 1401
Mva1269I	GAATGC	2 cut(s)	1091, 2371
MvaI	CCWGG	4 cut(s)	1998, 2787, 2856, 2890
MwoI	GCNNNNNNNGC	5 cut(s)	200, 1474, 1531, 3285, 3368
NciI	CCSGG	1 cut(s)	1527
NdeI	CATATG	1 cut(s)	3189
NheI	GCTAGC	1 cut(s)	2591
NlaIV	GGNNCC	7 cut(s)	856, 1709, 1866, 2540, 3221, 3415, 3424
NmuCI	GTSAC	4 cut(s)	416, 1648, 1788, 1898
NsiI	ATGCAT	3 cut(s)	256, 1470, 3349
NspI	RCATGY	2 cut(s)	1338, 1571
NspV	TTCGAA	1 cut(s)	2675
OliI	CACNNNNGTG	1 cut(s)	2820
PaeR7I	CTCGAG	2 cut(s)	1949, 3018
PagI	TCATGA	3 cut(s)	397, 718, 3434
PaqCI	CACCTGC	1 cut(s)	1515
PciI	ACATGT	1 cut(s)	1567
PcsI	WCGNNNNNNNCGW	2 cut(s)	1769, 3339
PctI	GAATGC	2 cut(s)	1091, 2371
PdmI	GAANNNNTTC	4 cut(s)	1091, 1119, 1319, 2523
PflMI	CCANNNNNTGG	1 cut(s)	2003
PfoI	TCCNGGA	1 cut(s)	2785
PkrI	GCNGC	9 cut(s)	205, 324, 1812, 2031, 2543, 2850, 2925, 3252, 3273
PleI	GAGTC	3 cut(s)	1613, 1645, 1905
PpsI	GAGTC	3 cut(s)	1613, 1645, 1905
PpuMI	RGGWCCY	1 cut(s)	3413
PscI	ACATGT	1 cut(s)	1567
PshBI	ATTAAT	1 cut(s)	1890
PsiI	TTATAA	1 cut(s)	1145
Psp124BI	GAGCTC	1 cut(s)	3019
Psp5II	RGGWCCY	1 cut(s)	3413
Psp6I	CCWGG	4 cut(s)	1996, 2785, 2854, 2888
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	4 cut(s)	1996, 2785, 2854, 2888
PspN4I	GGNNCC	7 cut(s)	856, 1709, 1866, 2540, 3221, 3415, 3424
PspPI	GGNCC	4 cut(s)	1208, 3175, 3220, 3413
PspPPI	RGGWCCY	1 cut(s)	3413
PsuI	RGATCY	3 cut(s)	1430, 2458, 2657
PvuII	CAGCTG	1 cut(s)	2923
RsaI	GTAC	5 cut(s)	16, 357, 1182, 1377, 2810
RsaNI	GTAC	5 cut(s)	15, 356, 1181, 1376, 2809
RseI	CAYNNNNRTG	4 cut(s)	564, 1613, 2820, 3318
SacI	GAGCTC	1 cut(s)	3019
SalI	GTCGAC	1 cut(s)	259
SatI	GCNGC	9 cut(s)	204, 323, 1811, 2030, 2542, 2849, 2924, 3251, 3272
Sau96I	GGNCC	4 cut(s)	1208, 3175, 3220, 3413
ScaI	AGTACT	2 cut(s)	1182, 1377
SchI	GAGTC	3 cut(s)	1613, 1645, 1906
ScrFI	CCNGG	5 cut(s)	1527, 1998, 2787, 2856, 2890
SduI	GDGCHC	5 cut(s)	8, 1231, 1422, 2208, 3019
SexAI	ACCWGGT	1 cut(s)	2854
Sfr274I	CTCGAG	2 cut(s)	1949, 3018
SfuI	TTCGAA	1 cut(s)	2675
SinI	GGWCC	4 cut(s)	1208, 3175, 3220, 3413
SlaI	CTCGAG	2 cut(s)	1949, 3018
SmiMI	CAYNNNNRTG	4 cut(s)	564, 1613, 2820, 3318
SmlI	CTYRAG	5 cut(s)	592, 1724, 1949, 2735, 3018
SmoI	CTYRAG	5 cut(s)	592, 1724, 1949, 2735, 3018
SsiI	CCGC	3 cut(s)	643, 669, 2542
SspI	AATATT	4 cut(s)	938, 1320, 1847, 2042
SspMI	CTAG	7 cut(s)	578, 993, 1298, 1325, 2511, 2592, 3354
SstI	GAGCTC	1 cut(s)	3019
StyD4I	CCNGG	5 cut(s)	1525, 1996, 2785, 2854, 2888
StyI	CCWWGG	2 cut(s)	2927, 3254
TaaI	ACNGT	9 cut(s)	563, 575, 1226, 1295, 2026, 2672, 2777, 2842, 3092
TaiI	ACGT	4 cut(s)	642, 1644, 1650, 3162
TaqII	GACCGA	1 cut(s)	3192
TatI	WGTACW	2 cut(s)	1180, 1375
TauI	GCSGC	1 cut(s)	2544
TscAI	CASTG	9 cut(s)	53, 124, 1231, 1236, 2077, 2428, 2603, 2704, 3424
TseFI	GTSAC	4 cut(s)	416, 1648, 1788, 1898
TseI	GCWGC	8 cut(s)	203, 322, 1810, 2029, 2848, 2923, 3250, 3271
Tsp45I	GTSAC	4 cut(s)	416, 1648, 1788, 1898
TspGWI	ACGGA	7 cut(s)	754, 761, 1761, 1762, 1877, 2259, 3212
TspRI	CASTG	9 cut(s)	53, 124, 1231, 1236, 2077, 2428, 2603, 2704, 3424
Van91I	CCANNNNNTGG	1 cut(s)	2003
Vha464I	CTTAAG	1 cut(s)	2735
VneI	GTGCAC	1 cut(s)	1227
VpaK11BI	GGWCC	4 cut(s)	1208, 3175, 3220, 3413
VspI	ATTAAT	1 cut(s)	1890
XagI	CCTNNNNNAGG	1 cut(s)	1715
XapI	RAATTY	9 cut(s)	288, 466, 481, 585, 722, 728, 2796, 3082, 3137
XbaI	TCTAGA	2 cut(s)	1297, 2510
XceI	RCATGY	2 cut(s)	1338, 1571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2925
XhoI	CTCGAG	2 cut(s)	1949, 3018
XmiI	GTMKAC	3 cut(s)	260, 1638, 2586
XmnI	GAANNNNTTC	4 cut(s)	1091, 1119, 1319, 2523
XspI	CTAG	7 cut(s)	578, 993, 1298, 1325, 2511, 2592, 3354
ZraI	GACGTC	1 cut(s)	640
ZrmI	AGTACT	2 cut(s)	1182, 1377
Zsp2I	ATGCAT	3 cut(s)	256, 1470, 3349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.