Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

2124487 .. 2126392

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1021200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCGTCTCTAACGGTGTCGTGTCTTCGCACTTTTTCTGTTTTGAAGCAAAACAAATCGTTTTTATTTTCGTTGTTGGAAACTCGTAGTAAAAAGGAGCACGCAGATATAAATTTCCAAATCCCTAAACCCCCTTTCCTTTCTGCTCGGCCTCGCTTCCCGCCACCGCCACCGCCACCACAGCCTTCTCTTCTCTTCGTCAGGTATAAAATGCCGAAGGTAAAGACTAACAGAGTCAAATACCCAGAAGGTTGGGAACTAATTGAGCCTACGCTTCGCGAACTGCAAGCTAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGAAAATGTGAGACCTTGTGGCCTATTTTCAAAATAGCACATCAAAAGAGCCGCTACATTTTCGACCTTTACCACCGGAGAAAAGAAATTTCCAAGGAGTTATATGAGTTTTGTCTGGACCAAGGCTATGCTGATCGCAATCTAATTGCAAAATGGAAAAAGCCTGGTTATGAACGGCTCTGCTGTTTAAGATGCATGCAGCCCCGGGACCATAACTTTGCCACCACGTGTGTTTGCCGAGTTCCTAAGCATCTGAGGGAGGAGAAGGTTATCGAGTGTGTGCATTGCGGCTGTAGGGGCTGTGCCAGCGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

216

Amino Acids

25.3

Weight (kDa)

9.45

Isoelectric Point (pI)

55.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	71 - 213	7.7e-65	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	279
AciI	CCGC	6 cut(s)	161, 167, 173, 382, 618, 639
AcsI	RAATTY	2 cut(s)	112, 417
AcvI	CACGTG	1 cut(s)	558
AdeI	CACNNNGTG	1 cut(s)	558
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	46, 361
AjnI	CCWGG	1 cut(s)	493
AluBI	AGCT	2 cut(s)	290, 305
AluI	AGCT	2 cut(s)	290, 305
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	12, 335
Ama87I	CYCGRG	1 cut(s)	534
AoxI	GGCC	2 cut(s)	149, 350
ApeKI	GCWGC	1 cut(s)	529
ApoI	RAATTY	2 cut(s)	112, 417
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AspS9I	GGNCC	2 cut(s)	448, 538
AsuC2I	CCSGG	2 cut(s)	535, 536
AvaI	CYCGRG	1 cut(s)	534
AvaII	GGWCC	2 cut(s)	448, 538
BbrPI	CACGTG	1 cut(s)	558
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	1 cut(s)	495
BcnI	CCSGG	2 cut(s)	535, 536
BcoDI	GTCTC	2 cut(s)	12, 335
BfmI	CTRYAG	1 cut(s)	622
BisI	GCNGC	3 cut(s)	382, 530, 619
BlsI	GCNGC	3 cut(s)	383, 531, 620
Bme1390I	CCNGG	3 cut(s)	495, 535, 536
Bme18I	GGWCC	2 cut(s)	448, 538
BmeT110I	CYCGRG	1 cut(s)	534
BmgT120I	GGNCC	2 cut(s)	448, 538
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	3 cut(s)	495, 535, 536
BmsI	GCATC	2 cut(s)	512, 589
BpiI	GAAGAC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	576
BpuMI	CCSGG	2 cut(s)	535, 536
BsaAI	YACGTR	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	4 cut(s)	423, 451, 533, 534
BsaWI	WCCGGW	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	495
BseDI	CCNNGG	4 cut(s)	423, 451, 533, 534
BseJI	GATNNNNATC	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	297, 575
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	541
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	151, 352
BsiHKAI	GWGCWC	1 cut(s)	102
BsiHKCI	CYCGRG	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	406, 535
BslFI	GGGAC	1 cut(s)	551
BsmAI	GTCTC	2 cut(s)	12, 335
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	151, 352
Bso31I	GGTCTC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	463
Bsp68I	TCGCGA	1 cut(s)	279
BspACI	CCGC	6 cut(s)	161, 167, 173, 382, 618, 639
BspANI	GGCC	2 cut(s)	151, 352
BspCNI	CTCAG	2 cut(s)	298, 576
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	613
BssECI	CCNNGG	4 cut(s)	423, 451, 533, 534
BssMI	GATC	1 cut(s)	463
BssT1I	CCWWGG	2 cut(s)	423, 451
Bst2UI	CCWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	2 cut(s)	195, 200
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	4 cut(s)	102, 288, 527, 637
BstDEI	CTNAG	4 cut(s)	291, 306, 576, 584
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	2 cut(s)	12, 335
BstMBI	GATC	1 cut(s)	463
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 627, 636
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	1 cut(s)	529
BstSCI	CCNGG	3 cut(s)	493, 533, 534
BstSFI	CTRYAG	1 cut(s)	622
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	17
BstXI	CCANNNNNNTGG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	151, 352
BtuMI	TCGCGA	1 cut(s)	279
Cac8I	GCNNGC	4 cut(s)	102, 288, 527, 637
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	448, 538
Cfr9I	CCCGGG	1 cut(s)	534
CviAII	CATG	2 cut(s)	320, 526
DdeI	CTNAG	4 cut(s)	291, 306, 576, 584
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DraIII	CACNNNGTG	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	195, 200
EarI	CTCTTC	2 cut(s)	195, 200
Eco130I	CCWWGG	2 cut(s)	423, 451
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	448, 538
Eco72I	CACGTG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	423, 451
EcoT22I	ATGCAT	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	423, 451
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	323, 529
FaiI	YATR	9 cut(s)	110, 207, 321, 433, 435, 459, 501, 527, 543
FaqI	GGGAC	1 cut(s)	551
FatI	CATG	2 cut(s)	319, 525
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	382, 530, 619
Fsp4HI	GCNGC	3 cut(s)	382, 530, 619
GluI	GCNGC	3 cut(s)	382, 530, 619
HaeIII	GGCC	2 cut(s)	151, 352
HapII	CCGG	2 cut(s)	406, 535
Hin1II	CATG	2 cut(s)	323, 529
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	2 cut(s)	406, 535
Hpy188I	TCNGA	1 cut(s)	585
Hpy188III	TCNNGA	3 cut(s)	278, 320, 446
HpyAV	CCTTC	4 cut(s)	195, 211, 242, 589
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	5 cut(s)	286, 479, 525, 529, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 627, 636
HpyF3I	CTNAG	4 cut(s)	291, 306, 576, 584
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	2 cut(s)	323, 529
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	7 cut(s)	187, 258, 419, 431, 480, 507, 548
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	512, 589
MaeII	ACGT	1 cut(s)	557
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	3 cut(s)	17, 182, 187
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	112, 261, 417, 474
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	162, 579, 583
Mph1103I	ATGCAT	1 cut(s)	527
MseI	TTAA	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	639
MspI	CCGG	2 cut(s)	406, 535
MspR9I	CCNGG	3 cut(s)	495, 535, 536
MvaI	CCWGG	1 cut(s)	495
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	181, 627, 636
NciI	CCSGG	2 cut(s)	535, 536
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	2 cut(s)	323, 529
NlaIV	GGNNCC	1 cut(s)	539
NmeAIII	GCCGAG	2 cut(s)	127, 593
NruI	TCGCGA	1 cut(s)	279
NsiI	ATGCAT	1 cut(s)	527
NspI	RCATGY	1 cut(s)	529
PaeI	GCATGC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	383, 531, 620
PleI	GAGTC	1 cut(s)	242
PmaCI	CACGTG	1 cut(s)	558
PmlI	CACGTG	1 cut(s)	558
PpsI	GAGTC	1 cut(s)	242
Ppu21I	YACGTR	1 cut(s)	558
Psp6I	CCWGG	1 cut(s)	493
PspCI	CACGTG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	448, 538
RruI	TCGCGA	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	3 cut(s)	382, 530, 619
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	2 cut(s)	448, 538
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	3 cut(s)	495, 535, 536
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	9 cut(s)	206, 222, 253, 292, 307, 347, 399, 560, 600
SfaNI	GCATC	2 cut(s)	512, 589
SfcI	CTRYAG	1 cut(s)	622
SinI	GGWCC	2 cut(s)	448, 538
SmaI	CCCGGG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	4 cut(s)	112, 261, 417, 474
SsiI	CCGC	6 cut(s)	161, 167, 173, 382, 618, 639
StyD4I	CCNGG	3 cut(s)	493, 533, 534
StyI	CCWWGG	2 cut(s)	423, 451
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	393, 603
TasI	AATT	4 cut(s)	112, 261, 417, 474
TauI	GCSGC	2 cut(s)	384, 621
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TseI	GCWGC	1 cut(s)	529
TspDTI	ATGAA	1 cut(s)	516
TspMI	CCCGGG	1 cut(s)	534
VpaK11BI	GGWCC	2 cut(s)	448, 538
XapI	RAATTY	2 cut(s)	112, 417
XceI	RCATGY	1 cut(s)	529
XmaI	CCCGGG	1 cut(s)	534
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.