Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1707515 .. 1708454

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGAAAATGTGAGACCTTGTGGCCTATTTTCAAAATAGCACATCAAAAGAGCCGCTACATTTTCGACCTTTACCACCGGAGAAAAGAAATTTCCAAGGAGTTATATGAGTTTTGTCTGGACCAAGGCTATGCTGATCGCAATCTAATTGCAAAGTGGAAAAAGCCTGGTTACGAACGGCTCTGCTGTTTAAGATGCATGCAGCCCCGGGACCATAACTTTGCCACCACATGCGTTTGCCGAGTTCCCAAGCATCTGAGGGAGGAGAAGGTTATCGAGTGTGTGCATTGTGGCTGTAGGGGCTGTGCCAGCGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

118

Amino Acids

13.93

Weight (kDa)

8.78

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 345
AcsI	RAATTY	1 cut(s)	123
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	1 cut(s)	123
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspS9I	GGNCC	2 cut(s)	154, 244
AsuC2I	CCSGG	2 cut(s)	241, 242
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	154, 244
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	2 cut(s)	241, 242
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	328
BisI	GCNGC	2 cut(s)	88, 236
BlsI	GCNGC	2 cut(s)	89, 237
Bme1390I	CCNGG	3 cut(s)	201, 241, 242
Bme18I	GGWCC	2 cut(s)	154, 244
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	154, 244
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	3 cut(s)	201, 241, 242
BmsI	GCATC	2 cut(s)	218, 295
BpuMI	CCSGG	2 cut(s)	241, 242
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	4 cut(s)	129, 157, 239, 240
BsaWI	WCCGGW	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	4 cut(s)	129, 157, 239, 240
BseJI	GATNNNNATC	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	112, 241
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	2 cut(s)	88, 345
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	4, 282
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	129, 157, 239, 240
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	2 cut(s)	129, 157
Bst2UI	CCWGG	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	233, 343
BstDEI	CTNAG	2 cut(s)	12, 290
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 342
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	2 cut(s)	235, 267
BstSCI	CCNGG	3 cut(s)	199, 239, 240
BstSFI	CTRYAG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	233, 343
CciI	TCATGA	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	154, 244
Cfr9I	CCCGGG	1 cut(s)	240
CviAII	CATG	3 cut(s)	26, 232, 264
CviJI	RGCY	9 cut(s)	11, 58, 87, 162, 199, 214, 238, 327, 336
CviKI_1	RGCY	9 cut(s)	11, 58, 87, 162, 199, 214, 238, 327, 336
DdeI	CTNAG	2 cut(s)	12, 290
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	129, 157
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	2 cut(s)	154, 244
Eco88I	CYCGRG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	2 cut(s)	129, 157
EcoT22I	ATGCAT	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	129, 157
FaeI	CATG	3 cut(s)	29, 235, 267
FaiI	YATR	7 cut(s)	27, 139, 141, 165, 233, 249, 265
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	25, 231, 263
Fnu4HI	GCNGC	2 cut(s)	88, 236
Fsp4HI	GCNGC	2 cut(s)	88, 236
GluI	GCNGC	2 cut(s)	88, 236
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	2 cut(s)	112, 241
Hin1II	CATG	3 cut(s)	29, 235, 267
HpaII	CCGG	2 cut(s)	112, 241
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	2 cut(s)	26, 152
HpyAV	CCTTC	1 cut(s)	295
HpyCH4V	TGCA	4 cut(s)	185, 231, 235, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 342
HpyF3I	CTNAG	2 cut(s)	12, 290
Hsp92II	CATG	3 cut(s)	29, 235, 267
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	125, 137, 186, 213, 254
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	2 cut(s)	218, 295
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MluCI	AATT	2 cut(s)	123, 180
MnlI	CCTC	2 cut(s)	285, 289
Mph1103I	ATGCAT	1 cut(s)	233
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	2 cut(s)	112, 241
MspR9I	CCNGG	3 cut(s)	201, 241, 242
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	333, 342
NciI	CCSGG	2 cut(s)	241, 242
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	29, 235, 267
NlaIV	GGNNCC	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	2 cut(s)	235, 267
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	89, 237
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	154, 244
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	2 cut(s)	88, 236
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	154, 244
ScrFI	CCNGG	3 cut(s)	201, 241, 242
SetI	ASST	4 cut(s)	13, 53, 105, 306
SfaNI	GCATC	2 cut(s)	218, 295
SfcI	CTRYAG	1 cut(s)	328
SinI	GGWCC	2 cut(s)	154, 244
SmaI	CCCGGG	1 cut(s)	242
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	2 cut(s)	123, 180
SsiI	CCGC	2 cut(s)	88, 345
StyD4I	CCNGG	3 cut(s)	199, 239, 240
StyI	CCWWGG	2 cut(s)	129, 157
TaqI	TCGA	2 cut(s)	99, 309
TasI	AATT	2 cut(s)	123, 180
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseI	GCWGC	1 cut(s)	235
TspMI	CCCGGG	1 cut(s)	240
VpaK11BI	GGWCC	2 cut(s)	154, 244
XapI	RAATTY	1 cut(s)	123
XceI	RCATGY	2 cut(s)	235, 267
XmaI	CCCGGG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.