Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

23864181 .. 23866698

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG152800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTGCCACTGATGACAGGTAAAAAAATGCCTAAGGTCAAGACTAATCGAGTCAACTACCCAGAAGGTTGGGAACTAATCGAGCCTACTCTTCGCGAACTGCAAGCAAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGAAAATGTGAAACCGTATGGCCTATTTTCAAAATAGCACATCAAAAGAGCCGCTACATTTTTGACCTTTACCATCGGAGAAAAGAAATTTCCAAGGAATTGTATGAGTTCTGCCTGGACCAAGGTTATGCTGACCGCAATCTAATTGCAAAGTGGAAGAAGCCTGGTTATGAACGCCTCTGCTGTTTGAGGTGCATGCAGCCTCGGGATCACAACTTTGCCACCACATGCGTCTGCCGAGTGCCCAAGCATCTGAGGGAGGAGAAGGTTATAGAGTGTGTGCATTGTGGCTGCAGGGGCTGTGCCAGTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

154

Amino Acids

18.24

Weight (kDa)

9.05

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	10 - 152	4.9e-65	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	199, 283
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	261, 310
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	447
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	346, 438
ApoI	RAATTY	1 cut(s)	234
AspS9I	GGNCC	1 cut(s)	265
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	358, 425
BccI	CCATC	2 cut(s)	134, 228
BciT130I	CCWGG	2 cut(s)	263, 312
BfmI	CTRYAG	1 cut(s)	439
BisI	GCNGC	3 cut(s)	199, 347, 439
BlsI	GCNGC	3 cut(s)	200, 348, 440
Bme1390I	CCNGG	2 cut(s)	263, 312
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	263, 312
BmsI	GCATC	1 cut(s)	406
BsaJI	CCNNGG	3 cut(s)	240, 268, 350
Bse1I	ACTGG	1 cut(s)	453
Bse21I	CCTNAGG	1 cut(s)	33
BseBI	CCWGG	2 cut(s)	263, 312
BseDI	CCNNGG	3 cut(s)	240, 268, 350
BseMII	CTCAG	2 cut(s)	114, 392
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	358, 425
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	351
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	355
Bsp68I	TCGCGA	1 cut(s)	96
BspACI	CCGC	2 cut(s)	199, 283
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	115, 393
BspFNI	CGCG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	443
BspPI	GGATC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	240, 268, 350
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	2 cut(s)	240, 268
Bst2UI	CCWGG	2 cut(s)	263, 312
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	105, 344
BstDEI	CTNAG	3 cut(s)	33, 123, 401
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	2 cut(s)	263, 312
BstNSI	RCATGY	2 cut(s)	346, 378
BstSCI	CCNGG	2 cut(s)	261, 310
BstSFI	CTRYAG	1 cut(s)	439
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	358, 425
BstXI	CCANNNNNNTGG	1 cut(s)	69
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	8, 460
BtuMI	TCGCGA	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	105, 344
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	367
CviAII	CATG	3 cut(s)	137, 343, 375
CviJI	RGCY	8 cut(s)	85, 122, 169, 198, 310, 349, 438, 447
CviKI_1	RGCY	8 cut(s)	85, 122, 169, 198, 310, 349, 438, 447
DdeI	CTNAG	3 cut(s)	33, 123, 401
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	240, 268
Eco47I	GGWCC	1 cut(s)	265
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	1 cut(s)	351
EcoRII	CCWGG	2 cut(s)	261, 310
EcoT14I	CCWWGG	2 cut(s)	240, 268
ErhI	CCWWGG	2 cut(s)	240, 268
FaeI	CATG	3 cut(s)	140, 346, 378
FaiI	YATR	8 cut(s)	138, 166, 252, 276, 318, 344, 376, 419
FatI	CATG	3 cut(s)	136, 342, 374
Fnu4HI	GCNGC	3 cut(s)	199, 347, 439
Fsp4HI	GCNGC	3 cut(s)	199, 347, 439
GluI	GCNGC	3 cut(s)	199, 347, 439
HaeIII	GGCC	1 cut(s)	169
HgaI	GACGC	1 cut(s)	367
Hin1II	CATG	3 cut(s)	140, 346, 378
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	225, 402
Hpy188III	TCNNGA	4 cut(s)	40, 95, 137, 353
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	59, 406
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	103, 296, 342, 346, 430, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	3 cut(s)	33, 123, 401
Hsp92II	CATG	3 cut(s)	140, 346, 378
Kzo9I	GATC	1 cut(s)	355
LpnPI	CCDG	7 cut(s)	3, 75, 248, 275, 297, 324, 427
Lsp1109I	GCAGC	2 cut(s)	358, 425
LweI	GCATC	1 cut(s)	406
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	83, 316
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	3 cut(s)	234, 245, 291
MlyI	GAGTC	1 cut(s)	60
MnlI	CCTC	5 cut(s)	330, 335, 360, 396, 400
MspR9I	CCNGG	2 cut(s)	263, 312
MvaI	CCWGG	2 cut(s)	263, 312
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	140, 346, 378
NmeAIII	GCCGAG	1 cut(s)	410
NruI	TCGCGA	1 cut(s)	96
NspI	RCATGY	2 cut(s)	346, 378
PaeI	GCATGC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	200, 348, 440
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	261, 310
PspGI	CCWGG	2 cut(s)	261, 310
PspPI	GGNCC	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	447
RruI	TCGCGA	1 cut(s)	96
SatI	GCNGC	3 cut(s)	199, 347, 439
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	263, 312
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	22, 39, 70, 124, 216, 274, 341, 417
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	265
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	3 cut(s)	234, 245, 291
SsiI	CCGC	2 cut(s)	199, 283
StyD4I	CCNGG	2 cut(s)	261, 310
StyI	CCWWGG	2 cut(s)	240, 268
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	2 cut(s)	49, 81
TasI	AATT	3 cut(s)	234, 245, 291
TauI	GCSGC	1 cut(s)	201
TscAI	CASTG	2 cut(s)	15, 460
TseI	GCWGC	2 cut(s)	346, 438
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	15, 460
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	2 cut(s)	346, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.