Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1277248 .. 1279077

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCGTCCATGGAATCTAACGGTCGTGTCGGGAGACCGCAGATATATTTCGAAAACCCTAAACCCCCTTTCCGCTCTGCTCCGCCTGTCTTCCCGCCACCTTCACCGCCTCCGCCACCACAGCGTTCTCTTCTCTCCATCAGGTATAAAATGCCGAAGGTGAAGACTAACCGAGTCAATTACCCAGAAGGTTGGGAACTGATTGAGCCTACGCTACGCGAACTACAAGCTAAGATGAGAGAAGCCGAGAATGATACCCATGATGGTAAGAGAAAATGTGAGACCTTGTGGCCTATTTTCAAAGTTGCACATCAAAAGAGCCGCTACATTTTTGACCTTTACCACCGGAGAAATGAAATTTCCAAGGAGTTATATGAGTTTTGCCTGGACCAAGGCTATGCTGACCGCAATCTAATTGCTAAATGGAAAAAGCCTGGTTATGAACGGCTCTGCTGTTTAAGATGCATGCAGCCCCGGGACCATAACTTTGCCACCACATGCGTTTGCCGAGTTCCCAAGCATCTGAGGGAGGAGAAGGTTATAGAGTGTGTGCACTGTGGCTGTCGGGGCTGTGCCAGTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

196

Amino Acids

22.84

Weight (kDa)

9.21

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	75
AccII	CGCG	1 cut(s)	219
AciI	CCGC	8 cut(s)	38, 73, 83, 95, 107, 113, 322, 406
AcsI	RAATTY	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	2 cut(s)	384, 433
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	2 cut(s)	28, 275
Alw44I	GTGCAC	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	1 cut(s)	290
ApaLI	GTGCAC	1 cut(s)	551
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	1 cut(s)	357
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspS9I	GGNCC	2 cut(s)	388, 478
AsuC2I	CCSGG	2 cut(s)	475, 476
AsuHPI	GGTGA	2 cut(s)	96, 172
AsuII	TTCGAA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	2 cut(s)	388, 478
BaeGI	GKGCMC	1 cut(s)	555
BbsI	GAAGAC	2 cut(s)	82, 170
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	146, 257
BceAI	ACGGC	1 cut(s)	461
BciT130I	CCWGG	2 cut(s)	386, 435
BcnI	CCSGG	2 cut(s)	475, 476
BcoDI	GTCTC	2 cut(s)	28, 275
BisI	GCNGC	2 cut(s)	322, 470
BlsI	GCNGC	2 cut(s)	323, 471
Bme1390I	CCNGG	4 cut(s)	386, 435, 475, 476
Bme18I	GGWCC	2 cut(s)	388, 478
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	2 cut(s)	388, 478
BmiI	GGNNCC	1 cut(s)	479
BmrFI	CCNGG	4 cut(s)	386, 435, 475, 476
BmsI	GCATC	2 cut(s)	452, 529
BpiI	GAAGAC	2 cut(s)	82, 170
Bpu14I	TTCGAA	1 cut(s)	51
BpuMI	CCSGG	2 cut(s)	475, 476
BsaI	GGTCTC	2 cut(s)	28, 275
BsaJI	CCNNGG	5 cut(s)	9, 363, 391, 473, 474
BsaWI	WCCGGW	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	576
BseBI	CCWGG	2 cut(s)	386, 435
BseDI	CCNNGG	5 cut(s)	9, 363, 391, 473, 474
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	1 cut(s)	545
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	346, 475
BslFI	GGGAC	1 cut(s)	491
BsmAI	GTCTC	2 cut(s)	28, 275
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	2 cut(s)	28, 275
BsoBI	CYCGRG	1 cut(s)	474
Bsp119I	TTCGAA	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	8 cut(s)	38, 73, 83, 95, 107, 113, 322, 406
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	479
BspT104I	TTCGAA	1 cut(s)	51
BspTNI	GGTCTC	2 cut(s)	28, 275
BsrBI	CCGCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	5 cut(s)	9, 363, 391, 473, 474
BssT1I	CCWWGG	3 cut(s)	9, 363, 391
Bst2UI	CCWGG	2 cut(s)	386, 435
Bst4CI	ACNGT	2 cut(s)	23, 557
Bst6I	CTCTTC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	231, 524
BstDSI	CCRYGG	1 cut(s)	9
BstFNI	CGCG	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	28, 275
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 567
BstNI	CCWGG	2 cut(s)	386, 435
BstNSI	RCATGY	2 cut(s)	469, 501
BstSCI	CCNGG	4 cut(s)	384, 433, 473, 474
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	2 cut(s)	82, 170
BstXI	CCANNNNNNTGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	553, 583
Cac8I	GCNNGC	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	388, 478
Cfr9I	CCCGGG	1 cut(s)	474
CviAII	CATG	4 cut(s)	10, 260, 466, 498
DdeI	CTNAG	2 cut(s)	231, 524
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	2 cut(s)	72, 102
Eco130I	CCWWGG	3 cut(s)	9, 363, 391
Eco31I	GGTCTC	2 cut(s)	28, 275
Eco47I	GGWCC	2 cut(s)	388, 478
Eco88I	CYCGRG	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	384, 433
EcoT14I	CCWWGG	3 cut(s)	9, 363, 391
EcoT22I	ATGCAT	1 cut(s)	467
ErhI	CCWWGG	3 cut(s)	9, 363, 391
FaeI	CATG	4 cut(s)	13, 263, 469, 501
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	4 cut(s)	9, 259, 465, 497
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	322, 470
Fsp4HI	GCNGC	2 cut(s)	322, 470
GluI	GCNGC	2 cut(s)	322, 470
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	2 cut(s)	346, 475
Hin1II	CATG	4 cut(s)	13, 263, 469, 501
HinfI	GANTC	2 cut(s)	14, 174
HpaII	CCGG	2 cut(s)	346, 475
HphI	GGTGA	2 cut(s)	96, 172
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	1 cut(s)	525
Hpy188III	TCNNGA	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	4 cut(s)	111, 151, 182, 529
HpyCH4III	ACNGT	2 cut(s)	23, 557
HpyCH4V	TGCA	4 cut(s)	308, 465, 469, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 567
HpyF3I	CTNAG	2 cut(s)	231, 524
Hsp92II	CATG	4 cut(s)	13, 263, 469, 501
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	9 cut(s)	99, 127, 198, 359, 371, 398, 420, 447, 488
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	2 cut(s)	452, 529
MbiI	CCGCTC	1 cut(s)	75
MboII	GAAGA	3 cut(s)	82, 122, 175
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	3 cut(s)	178, 357, 414
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	3 cut(s)	120, 519, 523
Mph1103I	ATGCAT	1 cut(s)	467
MseI	TTAA	1 cut(s)	458
MspI	CCGG	2 cut(s)	346, 475
MspR9I	CCNGG	4 cut(s)	386, 435, 475, 476
MvaI	CCWGG	2 cut(s)	386, 435
MvnI	CGCG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	121, 567
NciI	CCSGG	2 cut(s)	475, 476
NcoI	CCATGG	1 cut(s)	9
NlaIII	CATG	4 cut(s)	13, 263, 469, 501
NlaIV	GGNNCC	1 cut(s)	479
NmeAIII	GCCGAG	2 cut(s)	271, 533
NsiI	ATGCAT	1 cut(s)	467
NspI	RCATGY	2 cut(s)	469, 501
NspV	TTCGAA	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	323, 471
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	2 cut(s)	384, 433
PspGI	CCWGG	2 cut(s)	384, 433
PspN4I	GGNNCC	1 cut(s)	479
PspPI	GGNCC	2 cut(s)	388, 478
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	2 cut(s)	322, 470
Sau96I	GGNCC	2 cut(s)	388, 478
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	4 cut(s)	386, 435, 475, 476
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	8 cut(s)	103, 146, 162, 193, 232, 287, 339, 540
SfaNI	GCATC	2 cut(s)	452, 529
SfuI	TTCGAA	1 cut(s)	51
SinI	GGWCC	2 cut(s)	388, 478
SmaI	CCCGGG	1 cut(s)	476
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	3 cut(s)	178, 357, 414
SsiI	CCGC	8 cut(s)	38, 73, 83, 95, 107, 113, 322, 406
StyD4I	CCNGG	4 cut(s)	384, 433, 473, 474
StyI	CCWWGG	3 cut(s)	9, 363, 391
TaaI	ACNGT	2 cut(s)	23, 557
TaqI	TCGA	1 cut(s)	51
TasI	AATT	3 cut(s)	178, 357, 414
TauI	GCSGC	1 cut(s)	324
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	560, 583
TseI	GCWGC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	369, 456
TspMI	CCCGGG	1 cut(s)	474
TspRI	CASTG	2 cut(s)	560, 583
VneI	GTGCAC	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	388, 478
XapI	RAATTY	1 cut(s)	357
XceI	RCATGY	2 cut(s)	469, 501
XmaI	CCCGGG	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.