Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003415

Physical Location & Seq

Genomic Coordinates Reverse (-)

1731648 .. 1733839

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1018400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCGAAGGTAAAGACTAACCGAGTTAATTACCCAGAAGGTTGGGAACTGATTGAGCCTACGCTTCGCGAACTACAAGCTAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGAAAATGTGAGACCTTGTGGCCTATTTTCAAAGTAGCACATCAAAAGAGCCGCTACATTTTCGACCTTTACCACCGGAGGAATGAAATTTCCAAGGAGTTATATGAGTTTTGCCTGGACCAAGGCTACGCTGACCGCAATCTAATTGCAAAATGGAAAAAGCCTGGTTATGAACGGCTCTGCTGTTTAAGATGCATGCAGCCCCGGGACCATAACTTTGCCACCACATGCGTTTGCCGAGTTCCCAAGCATCTGAGGGAGGAGAAGGTTATAGAGTGTGTGCACTGCGGCTGTCGGGGCTGCGCCAGTGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

G10

Protein Analysis

146

Amino Acids

17.22

Weight (kDa)

8.76

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BUD31	PF01125	1 - 143	8.3e-65	Pre-mRNA-splicing factor BUD31

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21110 AT4G21110
fragaria_vesca	FvH4_5g19590 FvH4_6g18160
malus_domestica	MD00G1001900.v1.1 MD06G1015500.v1.1 MD12G1021200.v1.1 MD14G1018400.v1.1
prunus_persica	Prupe.7G115100_v2.0.a1
pyrus_communis	pycom06g01250 pycom12g01990 pycom14g01740
rosa_chinensis	RchiOBHm_Chr3g0472461 RchiOBHm_Chr6g0267281
rosa_laevigata	RLG00000014017
rosa_multiflora	Rmu_sc0001805.1_g000001 Rmu_sc0002145.1_g000004 Rmu_ssc0000388.1_g000057
rosa_roxburghii	Rroxscaffold_6G00408890 Rroxscaffold_7G00200950
rosa_rugosa	Rorug03G0125700 Rorug03G0125800 Rorug03G0125900 Rorug06G0031100 Rorug06G0031100 Rorug06G0031200 Rorug07G0081500
rosa_samantha	Rh3AG177600 Rh3BG203500 Rh3CG193900 Rh3CG201000 Rh3DG171600 Rh6AG152800 Rh6DG137200
rosa_wichuraiana	Rw3G016390 Rw6G013170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	3 cut(s)	172, 256, 408
AcsI	RAATTY	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	234, 283
AluBI	AGCT	2 cut(s)	80, 95
AluI	AGCT	2 cut(s)	80, 95
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	125
Alw44I	GTGCAC	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	324
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	401
ApeKI	GCWGC	2 cut(s)	319, 420
ApoI	RAATTY	1 cut(s)	207
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	2 cut(s)	238, 328
AsuC2I	CCSGG	2 cut(s)	325, 326
AvaI	CYCGRG	1 cut(s)	324
AvaII	GGWCC	2 cut(s)	238, 328
BaeGI	GKGCMC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	331, 407
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	236, 285
BcnI	CCSGG	2 cut(s)	325, 326
BcoDI	GTCTC	1 cut(s)	125
BisI	GCNGC	4 cut(s)	172, 320, 409, 421
BlsI	GCNGC	4 cut(s)	173, 321, 410, 422
Bme1390I	CCNGG	4 cut(s)	236, 285, 325, 326
Bme18I	GGWCC	2 cut(s)	238, 328
BmeT110I	CYCGRG	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	238, 328
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	4 cut(s)	236, 285, 325, 326
BmsI	GCATC	2 cut(s)	302, 379
BpuMI	CCSGG	2 cut(s)	325, 326
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	213, 241, 323, 324
BsaWI	WCCGGW	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	236, 285
BseDI	CCNNGG	4 cut(s)	213, 241, 323, 324
BseMII	CTCAG	2 cut(s)	87, 365
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	331, 407
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	324
BsiSI	CCGG	2 cut(s)	196, 325
BslFI	GGGAC	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp68I	TCGCGA	1 cut(s)	69
BspACI	CCGC	3 cut(s)	172, 256, 408
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	88, 366
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	4 cut(s)	213, 241, 323, 324
BssT1I	CCWWGG	2 cut(s)	213, 241
Bst2UI	CCWGG	2 cut(s)	236, 285
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	3 cut(s)	81, 96, 374
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	425
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNI	CCWGG	2 cut(s)	236, 285
BstNSI	RCATGY	2 cut(s)	319, 351
BstSCI	CCNGG	4 cut(s)	234, 283, 323, 324
BstSLI	GKGCMC	1 cut(s)	405
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	331, 407
BstXI	CCANNNNNNTGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	403, 433
BtuMI	TCGCGA	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	317
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	238, 328
Cfr9I	CCCGGG	1 cut(s)	324
CviAII	CATG	3 cut(s)	110, 316, 348
DdeI	CTNAG	3 cut(s)	81, 96, 374
Eco130I	CCWWGG	2 cut(s)	213, 241
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	238, 328
Eco88I	CYCGRG	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	234, 283
EcoT14I	CCWWGG	2 cut(s)	213, 241
EcoT22I	ATGCAT	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	213, 241
FaeI	CATG	3 cut(s)	113, 319, 351
FaiI	YATR	8 cut(s)	111, 223, 225, 291, 317, 333, 349, 392
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	109, 315, 347
Fnu4HI	GCNGC	4 cut(s)	172, 320, 409, 421
Fsp4HI	GCNGC	4 cut(s)	172, 320, 409, 421
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	4 cut(s)	172, 320, 409, 421
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	2 cut(s)	196, 325
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	3 cut(s)	113, 319, 351
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HpaII	CCGG	2 cut(s)	196, 325
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	68, 110
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	32, 379
HpyCH4V	TGCA	4 cut(s)	269, 315, 319, 403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	3 cut(s)	81, 96, 374
Hsp92II	CATG	3 cut(s)	113, 319, 351
HspAI	GCGC	1 cut(s)	423
LpnPI	CCDG	7 cut(s)	48, 209, 221, 248, 270, 297, 338
Lsp1109I	GCAGC	2 cut(s)	331, 407
LweI	GCATC	2 cut(s)	302, 379
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	3 cut(s)	28, 207, 264
MnlI	CCTC	3 cut(s)	192, 369, 373
Mph1103I	ATGCAT	1 cut(s)	317
MseI	TTAA	2 cut(s)	27, 308
MspI	CCGG	2 cut(s)	196, 325
MspR9I	CCNGG	4 cut(s)	236, 285, 325, 326
MvaI	CCWGG	2 cut(s)	236, 285
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	417
NciI	CCSGG	2 cut(s)	325, 326
NlaIII	CATG	3 cut(s)	113, 319, 351
NlaIV	GGNNCC	1 cut(s)	329
NmeAIII	GCCGAG	1 cut(s)	383
NruI	TCGCGA	1 cut(s)	69
NsiI	ATGCAT	1 cut(s)	317
NspI	RCATGY	2 cut(s)	319, 351
PaeI	GCATGC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	109
PkrI	GCNGC	4 cut(s)	173, 321, 410, 422
Psp6I	CCWGG	2 cut(s)	234, 283
PspGI	CCWGG	2 cut(s)	234, 283
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	238, 328
RruI	TCGCGA	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	27, 308
SatI	GCNGC	4 cut(s)	172, 320, 409, 421
Sau96I	GGNCC	2 cut(s)	238, 328
ScrFI	CCNGG	4 cut(s)	236, 285, 325, 326
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	7 cut(s)	12, 43, 82, 97, 137, 189, 390
SfaNI	GCATC	2 cut(s)	302, 379
SinI	GGWCC	2 cut(s)	238, 328
SmaI	CCCGGG	1 cut(s)	326
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	28, 207, 264
SsiI	CCGC	3 cut(s)	172, 256, 408
StyD4I	CCNGG	4 cut(s)	234, 283, 323, 324
StyI	CCWWGG	2 cut(s)	213, 241
TaqI	TCGA	1 cut(s)	183
TasI	AATT	3 cut(s)	28, 207, 264
TauI	GCSGC	2 cut(s)	174, 411
Tru1I	TTAA	2 cut(s)	27, 308
Tru9I	TTAA	2 cut(s)	27, 308
TscAI	CASTG	2 cut(s)	410, 433
TseI	GCWGC	2 cut(s)	319, 420
TspDTI	ATGAA	2 cut(s)	219, 306
TspMI	CCCGGG	1 cut(s)	324
TspRI	CASTG	2 cut(s)	410, 433
VneI	GTGCAC	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	238, 328
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	2 cut(s)	319, 351
XmaI	CCCGGG	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.