Rorug03G0125900

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000650
Physical Location & Seq
Reverse (-)
10146652 .. 10149722
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0125900.1

Sequence Viewer

Length: 1014 bp
ATGACCCAAGGACTTCTCCAATGGAGTCCTTGCCACCACTCTCTCTCCCTCCTCCCCATCTCCATCCCCACAACCAAACACACCCACCTCCCTCTCTCAATCTCCGCCACTCTAGAATCTTCCACCCAACAACAGCAGCAGCAGCAGCTCTCCGCCAGAGAGAGAAGGCAGCTCAGAAACGAGAGGAGAGAGAGCAAAGCCGGCACCAGCTGGAAAGAAAAGGTCGAGGAGAAGCTTCTGGAGAAGCCCACCCAGAAATTCGCTCACTGGAAAGAAGAGCTCAACATCAACAACCTCGCTCGCGAGGGCCCACAGTGGTGGATCGTTCGAGTTTCTAGAGTCAAGGGCCAGGAGACCGCTCAGTTAATCGCTCGGTTGCTCGCTAGGAACTACCCACATATGGATTTCAAGGTTTATGCTCCAACGATACCGGGGAGGAGGAAATTGAAGAATGGTACCTACTCGGTTAAAGCAAAGCCACTGTTTCCGGGGTGTGTTTTTTTTAGGTGTGTGTTGGACAAGGAGATACATGATTTCGTGACGGAGTTGGATGGAGTTGGAGGCTTTATTGGTGCCAAGGTTGGAAATACGAAGAGACAGATCAACAGACCCAGGCCAGTATCTGAGTTTGACATGGAAGCTATCTTTGCAAAGGCAAAGGAAGAACAAGAAAAAGCTGAACTAGCTTTTCAACAAGAGCAGCAACTCAGCTCTGGGCTGAATATTGATGATCTGAATTCTAGTGATGCTGCAAAATCTGCTGGAGATGCTAAATCCAAAGGGAGATCCAGAAAAGCTTCTGATCCTCTGATAAATGGTTCATCTAAGGCAAAGGATAAGAAACTTGTCCTAGGTTCTACTGTTCAAGTTGTATCTGGGACTTTTGCTGAATATGAAGGCTGCCTGAAGAAGCTGAACCGCAGAACCAAAAAGGCAACCGTGGCATTTACGTTATTTGGGAAAGAAAGCTTAGTAGATTTAGATGTCAGTGAAATTGTTTCAGAGACCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

337

Amino Acids

37.84

Weight (kDa)

9.61

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NusG PF02357 105 - 213 3.8e-07 Transcription termination factor nusG
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 3 cut(s) 203, 455, 572
AccBSI CCGCTC 1 cut(s) 359
AccII CGCG 1 cut(s) 303
AciI CCGC 4 cut(s) 105, 153, 357, 919
AclWI GGATC 3 cut(s) 329, 780, 797
AcsI RAATTY 2 cut(s) 257, 736
AcuI CTGAAG 1 cut(s) 926
AfaI GTAC 1 cut(s) 457
AfiI CCNNNNNNNGG 1 cut(s) 400
AgsI TTSAA 4 cut(s) 409, 448, 692, 866
AjnI CCWGG 2 cut(s) 348, 611
AleI CACNNNNGTG 1 cut(s) 316
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 3 cut(s) 347, 589, 998
AlwI GGATC 3 cut(s) 329, 780, 797
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 3 cut(s) 307, 346, 614
ApaI GGGCCC 1 cut(s) 311
ApeKI GCWGC 8 cut(s) 136, 139, 142, 145, 169, 700, 749, 900
ApoI RAATTY 2 cut(s) 257, 736
Asp700I GAANNNNTTC 1 cut(s) 796
Asp718I GGTACC 1 cut(s) 455
AspA2I CCTAGG 1 cut(s) 850
AspS9I GGNCC 3 cut(s) 307, 308, 346
AsuC2I CCSGG 2 cut(s) 432, 489
AvrII CCTAGG 1 cut(s) 850
BaeGI GKGCMC 1 cut(s) 311
BanI GGYRCC 3 cut(s) 203, 455, 572
BanII GRGCYC 2 cut(s) 282, 311
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 8 cut(s) 148, 151, 154, 157, 181, 712, 736, 887
BccI CCATC 3 cut(s) 65, 71, 545
BciT130I CCWGG 2 cut(s) 350, 613
BcnI CCSGG 2 cut(s) 432, 489
BcoDI GTCTC 3 cut(s) 347, 589, 998
BfaI CTAG 6 cut(s) 113, 336, 384, 683, 741, 851
BisI GCNGC 8 cut(s) 137, 140, 143, 146, 170, 701, 750, 901
BlnI CCTAGG 1 cut(s) 850
BlsI GCNGC 8 cut(s) 138, 141, 144, 147, 171, 702, 751, 902
Bme1390I CCNGG 4 cut(s) 350, 432, 489, 613
BmgT120I GGNCC 3 cut(s) 307, 308, 346
BmiI GGNNCC 4 cut(s) 205, 309, 457, 574
BmrFI CCNGG 4 cut(s) 350, 432, 489, 613
BmsI GCATC 2 cut(s) 736, 757
BpmI CTGGAG 2 cut(s) 260, 783
BpuMI CCSGG 2 cut(s) 432, 489
BsaI GGTCTC 2 cut(s) 347, 998
BsaJI CCNNGG 7 cut(s) 7, 431, 488, 576, 611, 850, 939
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 400
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 2 cut(s) 272, 617
BseBI CCWGG 2 cut(s) 350, 613
BseDI CCNNGG 7 cut(s) 7, 431, 488, 576, 611, 850, 939
BseGI GGATG 2 cut(s) 63, 556
BseLI CCNNNNNNNGG 1 cut(s) 400
BseMII CTCAG 4 cut(s) 187, 374, 615, 721
BseNI ACTGG 2 cut(s) 272, 617
BseRI GAGGAG 4 cut(s) 41, 199, 242, 451
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 8 cut(s) 148, 151, 154, 157, 181, 712, 736, 887
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 309, 348, 616
BshNI GGYRCC 3 cut(s) 203, 455, 572
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 3 cut(s) 201, 431, 488
BslFI GGGAC 1 cut(s) 892
BslI CCNNNNNNNGG 1 cut(s) 400
BsmAI GTCTC 3 cut(s) 347, 589, 998
BsmFI GGGAC 1 cut(s) 892
BsnI GGCC 3 cut(s) 309, 348, 616
Bso31I GGTCTC 2 cut(s) 347, 998
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 282, 311
Bsp143I GATC 5 cut(s) 321, 600, 730, 785, 802
Bsp68I TCGCGA 1 cut(s) 303
BspACI CCGC 4 cut(s) 105, 153, 357, 919
BspANI GGCC 3 cut(s) 309, 348, 616
BspCNI CTCAG 4 cut(s) 186, 373, 616, 720
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 205, 309, 457, 574
BspPI GGATC 3 cut(s) 329, 780, 797
BspQI GCTCTTC 1 cut(s) 270
BspT107I GGYRCC 3 cut(s) 203, 455, 572
BspTNI GGTCTC 2 cut(s) 347, 998
BsrBI CCGCTC 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 2 cut(s) 272, 617
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 7 cut(s) 7, 431, 488, 576, 611, 850, 939
BssMI GATC 5 cut(s) 321, 600, 730, 785, 802
BssT1I CCWWGG 3 cut(s) 7, 576, 850
Bst2UI CCWGG 2 cut(s) 350, 613
Bst4CI ACNGT 4 cut(s) 315, 483, 862, 940
Bst6I CTCTTC 2 cut(s) 270, 587
BstAPI GCANNNNNTGC 1 cut(s) 758
BstC8I GCNNGC 3 cut(s) 202, 301, 381
BstDEI CTNAG 6 cut(s) 173, 360, 624, 707, 825, 970
BstDSI CCRYGG 1 cut(s) 939
BstF5I GGATG 2 cut(s) 63, 556
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 5 cut(s) 324, 603, 733, 788, 805
BstMAI GTCTC 3 cut(s) 347, 589, 998
BstMBI GATC 5 cut(s) 321, 600, 730, 785, 802
BstMWI GCNNNNNNNGC 8 cut(s) 142, 145, 201, 647, 683, 758, 767, 941
BstNI CCWGG 2 cut(s) 350, 613
BstSCI CCNGG 4 cut(s) 348, 430, 487, 611
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 8 cut(s) 148, 151, 154, 157, 181, 712, 736, 887
BstX2I RGATCY 1 cut(s) 785
BstXI CCANNNNNNTGG 1 cut(s) 318
BstYI RGATCY 1 cut(s) 785
BsuRI GGCC 3 cut(s) 309, 348, 616
BtgI CCRYGG 1 cut(s) 939
BtsCI GGATG 2 cut(s) 63, 556
BtsIMutI CAGTG 4 cut(s) 265, 320, 479, 994
BtuMI TCGCGA 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 202, 301, 381
CaiI CAGNNNCTG 1 cut(s) 623
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 307, 308, 346
Csp6I GTAC 1 cut(s) 456
CviAII CATG 2 cut(s) 530, 634
CviQI GTAC 1 cut(s) 456
DdeI CTNAG 6 cut(s) 173, 360, 624, 707, 825, 970
DpnI GATC 5 cut(s) 323, 602, 732, 787, 804
DpnII GATC 5 cut(s) 321, 600, 730, 785, 802
Eam1104I CTCTTC 2 cut(s) 270, 587
EarI CTCTTC 2 cut(s) 270, 587
EciI GGCGGA 2 cut(s) 94, 142
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 3 cut(s) 7, 576, 850
Eco24I GRGCYC 2 cut(s) 282, 311
Eco31I GGTCTC 2 cut(s) 347, 998
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 926
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 348, 611
EcoT14I CCWWGG 3 cut(s) 7, 576, 850
EcoT38I GRGCYC 2 cut(s) 282, 311
ErhI CCWWGG 3 cut(s) 7, 576, 850
FaeI CATG 2 cut(s) 533, 637
FaiI YATR 6 cut(s) 399, 401, 417, 531, 635, 894
FaqI GGGAC 1 cut(s) 892
FatI CATG 2 cut(s) 529, 633
FauNDI CATATG 1 cut(s) 399
Fnu4HI GCNGC 8 cut(s) 137, 140, 143, 146, 170, 701, 750, 901
FokI GGATG 2 cut(s) 50, 563
FriOI GRGCYC 2 cut(s) 282, 311
Fsp4HI GCNGC 8 cut(s) 137, 140, 143, 146, 170, 701, 750, 901
FspBI CTAG 6 cut(s) 113, 336, 384, 683, 741, 851
GluI GCNGC 8 cut(s) 137, 140, 143, 146, 170, 701, 750, 901
GsuI CTGGAG 2 cut(s) 260, 783
HaeIII GGCC 3 cut(s) 309, 348, 616
HapII CCGG 3 cut(s) 201, 431, 488
Hin1II CATG 2 cut(s) 533, 637
HindIII AAGCTT 3 cut(s) 233, 795, 967
HinfI GANTC 3 cut(s) 25, 116, 339
HpaII CCGG 3 cut(s) 201, 431, 488
Hpy188I TCNGA 6 cut(s) 176, 625, 735, 802, 810, 1003
Hpy188III TCNNGA 6 cut(s) 113, 239, 302, 336, 538, 789
HpyAV CCTTC 2 cut(s) 159, 890
HpyCH4III ACNGT 4 cut(s) 315, 483, 862, 940
HpyCH4IV ACGT 1 cut(s) 950
HpyCH4V TGCA 2 cut(s) 650, 752
HpyF10VI GCNNNNNNNGC 8 cut(s) 142, 145, 201, 647, 683, 758, 767, 941
HpyF3I CTNAG 6 cut(s) 173, 360, 624, 707, 825, 970
HpySE526I ACGT 1 cut(s) 950
Hsp92II CATG 2 cut(s) 533, 637
KpnI GGTACC 1 cut(s) 459
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 5 cut(s) 321, 600, 730, 785, 802
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 8 cut(s) 148, 151, 154, 157, 181, 712, 736, 887
LweI GCATC 2 cut(s) 736, 757
MaeI CTAG 6 cut(s) 113, 336, 384, 683, 741, 851
MaeII ACGT 1 cut(s) 950
MaeIII GTNAC 1 cut(s) 538
MalI GATC 5 cut(s) 323, 602, 732, 787, 804
MbiI CCGCTC 1 cut(s) 359
MboI GATC 5 cut(s) 321, 600, 730, 785, 802
MboII GAAGA 6 cut(s) 111, 287, 460, 604, 674, 919
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 2 cut(s) 282, 311
MluCI AATT 4 cut(s) 257, 443, 736, 993
MlyI GAGTC 2 cut(s) 34, 348
MmeI TCCRAC 5 cut(s) 446, 495, 528, 538, 562
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 2 cut(s) 365, 468
MslI CAYNNNNRTG 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 3 cut(s) 201, 431, 488
MspR9I CCNGG 4 cut(s) 350, 432, 489, 613
MvaI CCWGG 2 cut(s) 350, 613
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 8 cut(s) 142, 145, 201, 647, 683, 758, 767, 941
NaeI GCCGGC 1 cut(s) 202
NciI CCSGG 2 cut(s) 432, 489
NdeI CATATG 1 cut(s) 399
NdeII GATC 5 cut(s) 321, 600, 730, 785, 802
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 533, 637
NlaIV GGNNCC 4 cut(s) 205, 309, 457, 574
NmuCI GTSAC 1 cut(s) 538
NruI TCGCGA 1 cut(s) 303
OliI CACNNNNGTG 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 270
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 8 cut(s) 138, 141, 144, 147, 171, 702, 751, 902
PleI GAGTC 2 cut(s) 33, 347
PpsI GAGTC 2 cut(s) 33, 347
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 2 cut(s) 348, 611
PspGI CCWGG 2 cut(s) 348, 611
PspN4I GGNNCC 4 cut(s) 205, 309, 457, 574
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 3 cut(s) 307, 308, 346
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 210
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 1 cut(s) 457
RsaNI GTAC 1 cut(s) 456
RseI CAYNNNNRTG 1 cut(s) 316
SacI GAGCTC 1 cut(s) 282
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 365, 468
SatI GCNGC 8 cut(s) 137, 140, 143, 146, 170, 701, 750, 901
Sau3AI GATC 5 cut(s) 321, 600, 730, 785, 802
Sau96I GGNCC 3 cut(s) 307, 308, 346
SchI GAGTC 2 cut(s) 34, 348
ScrFI CCNGG 4 cut(s) 350, 432, 489, 613
SduI GDGCHC 2 cut(s) 282, 311
SfaNI GCATC 2 cut(s) 736, 757
SmiMI CAYNNNNRTG 1 cut(s) 316
Sse9I AATT 4 cut(s) 257, 443, 736, 993
SsiI CCGC 4 cut(s) 105, 153, 357, 919
SspI AATATT 1 cut(s) 724
SspMI CTAG 6 cut(s) 113, 336, 384, 683, 741, 851
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 348, 430, 487, 611
StyI CCWWGG 3 cut(s) 7, 576, 850
TaaI ACNGT 4 cut(s) 315, 483, 862, 940
TaiI ACGT 1 cut(s) 953
TaqI TCGA 2 cut(s) 225, 328
TasI AATT 4 cut(s) 257, 443, 736, 993
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 365, 468
Tru9I TTAA 2 cut(s) 365, 468
TscAI CASTG 4 cut(s) 272, 320, 486, 994
TseFI GTSAC 1 cut(s) 538
TseI GCWGC 8 cut(s) 136, 139, 142, 145, 169, 700, 749, 900
Tsp45I GTSAC 1 cut(s) 538
TspDTI ATGAA 2 cut(s) 810, 909
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 4 cut(s) 272, 320, 486, 994
XapI RAATTY 2 cut(s) 257, 736
XbaI TCTAGA 2 cut(s) 112, 335
XmaJI CCTAGG 1 cut(s) 850
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 6 cut(s) 113, 336, 384, 683, 741, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.