Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034682.1

Orthogroup ID

OG0000650

Physical Location & Seq

Genomic Coordinates Reverse (-)

5559 .. 6333

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034682.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgaagccaaacctgagtgaggaagctatattggattggaatttgaaaatgggtgccgggaagaccagtacttaccaagttaaatttgtggtggattctaactttgggatgccaggagccaccacggttagcaacagagaccagagcgagttctatttggatagcatcaacattgaagggctgaaagaactaagaaaaatggagctaattcaacagaggggtgatggaacaggatttcgaaaaccatctgatagaatatacgattatgacacttacaatgacattggaaatcctgatattggatacataaggcccatccttggaggcaacagacacccataccctagacgctgtcgaactggaaggcctcgaaccatgacaggtgacgccttagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

8.71

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17420 AT1G72520
fragaria_vesca	FvH4_4g01390 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970
malus_domestica	MD05G1339200.v1.1 MD05G1339300.v1.1 MD05G1339400.v1.1 MD09G1180900.v1.1 MD10G1294000.v1.1 MD17G1167100.v1.1
prunus_persica	Prupe.3G039200_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1
pyrus_communis	pycom09g09820 pycom09g09830 pycom10g24590 pycom17g15900
rosa_chinensis	RchiOBHm_Chr2g0145961 RchiOBHm_Chr3g0472481 RchiOBHm_Chr5g0008481 RchiOBHm_Chr5g0008501 RchiOBHm_Chr5g0008511
rosa_laevigata	RLG00000020179 RLG00000024076 RLG00000031573 RLG00000031574 RLG00000031576
rosa_multiflora	Rmu_sc0001665.1_g000013 Rmu_sc0001702.1_g000033 Rmu_sc0002145.1_g000002 Rmu_sc0034682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434820 Rroxscaffold_2G00100350
rosa_rugosa	Rorug02G0393500 Rorug03G0125900 Rorug04G0435900.1 Rorug04G0436000 Rorug04G0436400 Rorug04G0436400 Rorug04G0436500
rosa_samantha	Rh2BG460800 Rh2DG470100 Rh3AG177700 Rh3BG203600 Rh3CG194000 Rh3CG201100 Rh3DG171500 Rh5AG064800 Rh5AG064900 Rh5AG065200 Rh5BG061900 Rh5BG062100 Rh5BG062300 Rh5BG062400 Rh5BG062500 Rh5CG072000 Rh5CG072200 Rh5CG072300 Rh5CG072400 Rh5CG072600 Rh5CG072800 Rh5DG063500 Rh5DG063700 Rh5DG063900
rosa_wichuraiana	Rw2G036640 Rw3G016380 Rw5G005580 Rw5G005590 Rw5G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AcsI	RAATTY	2 cut(s)	40, 83
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	3 cut(s)	19, 299, 320
AgsI	TTSAA	3 cut(s)	46, 176, 212
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	2 cut(s)	26, 205
AluI	AGCT	2 cut(s)	26, 205
Alw26I	GTCTC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	311, 365
ApoI	RAATTY	2 cut(s)	40, 83
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	233, 395
AsuII	TTCGAA	1 cut(s)	238
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	68
BccI	CCATC	3 cut(s)	218, 253, 323
BciT130I	CCWGG	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	296
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	58, 114
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	55, 118
BmrFI	CCNGG	2 cut(s)	58, 114
BmsI	GCATC	2 cut(s)	99, 174
BpiI	GAAGAC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	123, 319
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 299, 320
Bse1I	ACTGG	2 cut(s)	66, 364
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	123, 319
BseGI	GGATG	2 cut(s)	114, 315
BseLI	CCNNNNNNNGG	3 cut(s)	19, 299, 320
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	66, 364
BshFI	GGCC	2 cut(s)	313, 367
BshNI	GGYRCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	19, 299, 320
BsmAI	GTCTC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	313, 367
Bso31I	GGTCTC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	238
BspANI	GGCC	2 cut(s)	313, 367
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	55, 118
BspT104I	TTCGAA	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	66, 364
BssECI	CCNNGG	2 cut(s)	123, 319
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	14, 191, 391
BstDSI	CCRYGG	1 cut(s)	123
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	114, 315
BstMAI	GTCTC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	56, 112
BstV2I	GAAGAC	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	296
BsuRI	GGCC	2 cut(s)	313, 367
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	114, 315
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	7 cut(s)	7, 26, 119, 181, 205, 313, 367
CviKI_1	RGCY	7 cut(s)	7, 26, 119, 181, 205, 313, 367
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	3 cut(s)	14, 191, 391
Eco130I	CCWWGG	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	379
FaiI	YATR	6 cut(s)	29, 259, 267, 308, 340, 377
FatI	CATG	1 cut(s)	375
FokI	GGATG	2 cut(s)	121, 302
FspBI	CTAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	313, 367
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	357
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	233, 395
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	170, 357
HpyCH4III	ACNGT	1 cut(s)	127
HpyF3I	CTNAG	3 cut(s)	14, 191, 391
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	116, 202
LweI	GCATC	2 cut(s)	99, 174
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	383
MboII	GAAGA	1 cut(s)	73
MluCI	AATT	3 cut(s)	40, 83, 207
MnlI	CCTC	4 cut(s)	13, 210, 317, 378
MseI	TTAA	2 cut(s)	81, 397
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	58, 114
MvaI	CCWGG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	58
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	55, 118
NmuCI	GTSAC	1 cut(s)	383
NspV	TTCGAA	1 cut(s)	238
PceI	AGGCCT	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	55, 118
PspPI	GGNCC	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	351
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	81, 397
Sau96I	GGNCC	1 cut(s)	312
ScaI	AGTACT	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	58, 114
SetI	ASST	4 cut(s)	15, 28, 207, 385
SfaNI	GCATC	2 cut(s)	99, 174
SfuI	TTCGAA	1 cut(s)	238
Sse9I	AATT	3 cut(s)	40, 83, 207
SseBI	AGGCCT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	56, 112
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	238, 355, 370
TasI	AATT	3 cut(s)	40, 83, 207
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	81, 397
Tru9I	TTAA	2 cut(s)	81, 397
TseFI	GTSAC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	17
XapI	RAATTY	2 cut(s)	40, 83
XspI	CTAG	1 cut(s)	345
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.