Rh3DG171500

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000650
Physical Location & Seq
Reverse (-)
15048964 .. 15060290
11327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG171500.1

Sequence Viewer

Length: 2568 bp
ATGGCAAACGTAGCGGTAGTGAATCTTAATACAACAACCAATGGTGCTCTTGATCATGTGGACATGGTAACATCCTCTCTTGCTCTTACCGCAGAGAAGCCTGCAGTGACTTTCGAACTCATTGCCATAATCACTGTAAAGAATATTCATCAGAAGGTAAATATCAATGTCGACACAATGCTTCATTGGTTCGGCGACAGAAGACACGATGATTACAAGGGTGGGGTACTTCTACAGCTTGTTAGTACTCAAACTGCCCCAAAGGGAGTGAAGCCGAAACTAAGCCAGGAAGCTGTATTGGATTGGACAAAGAATCCGAAAATGGGTGATGAGAAGAACAGTTACCAGGTCAAGTTTGTGGTGGACTCAACATTTGGGATGCCAGGAGCCATTACAGTGAGTAACAGATATGATGATGAGTTCTATTTAGATAGCATTAACATTGAAGGTCTAGTTCACTTTGCCTGCAACTCTTGGGTCCAACCAGATCAGAAGTCTAACGCGCCAAAAAGAATCTTCTTCCCTACTAGGGCATACTTACCCAATGAGACACCAGCTGGGCTGAAAGAGCTAAGAGAAATAGAGCTGATTCAACTGAGGGGCGATGGGACTGGGCTTAGAGTGCAATCTGATAGAATATACGACTACGACAGTTACAATGACATTGGAAATCCAGATAAGGGAATTGAGTACATGAGACCTACCCTTGGAGGCAATGTTCACCCACACCCTAGACGCTGTCGAACTGGACGCCCTCCAACCAAGACAGATGAGAATATGGAGTCACCGGTGAGCGAATTCGAGACAATCTATGTGCCTAGAGATGAAGAGTTTGAGCAGCCCAAACAAGAAGCTCTAAATGTCGGAAAGTTGAAAGGAACTGTCCGCAATATAACTCATGCACTTTCAACAATTACTGCAGATAGAAATGTCAAGGGGTATTCGGACATCAATGGTCTGTATACAGATTCTTCTTCTCTTCAATCCAAGACCCGGCCGGGAACTCAAATTTTGAACAAAGTCCACGAATTCCTCAAATTTGACCCCCCAAAATTAAAATCAAGGGAGATATATTGTCTGCCAGATGACCAATTTGGGCGCCAAACCATTGCAGGCATAAACCCTTTAAGCATAGAAAGGCTCGAGGTTTTCCCACCTGTAAGCAAACTAGATACCTCCATTTATGGTCCTCAAGAATCAGCACTCAAGGAAGAGCATATAATAGGCCAACTAAATGGCATGTCCATACAACAGGCATTGGAAGAAAACAAGCTTTTCATACTAGACTACCATGACATTTTTCTTCCATTTCTCAACAAAATAAACGCTCTAGATGACCGGAAAGCTTATGGAACACGAACAATTTTTTTCCTGACATCATTAGGAACTTTGAAGCCCATTGCTATTGAGCTCAGTCTTTCAGATTCAGCATCCAAGCAGGTTCTCACTCCTCCAATTGATGCTACGACAAGTTGGCTTTGGCAGCTTGGCAAGGCTCATGTATGCTCCAATGATGCCAGTGTTCATCAACTCGTTCATCACTGGTTACGCACCCACGCTTGCATAGAACCGATTACAATAGCAACTCATAGACAACTGAGTGTTATGCATCCTATCTGCAAGCTTCTCAAACCTCACTTGCGCTACACCTTGAAGGTAAATGCTATGGCCCGTAAGGATCTCATCAACGCCGGAGGGACAGTCGAGTCCAATTTTACTGCTGCTAAATACTGCATGGAGTTCAGTTGTGCTGCTTATCGAGATTGGTGGCGCTTTGACCTTGAAGGTCTTCCTGCAGATCTCATTAGAAGAGGAATAGCTGTACCAGACACAAGTCAAGTGCATGGGCTAAAACTACTCATTCAAGACTACCCTTATGCAACAGACGGGCTCCTCATATGGTCAGCAATTGAGACATTGGTTCAAACCTATGTTAATTACTACTACCCTAATGCAAGTTTGGTCACTTCAGATACTGAACTCCAATCCTGGTACAATGAATTTATCAATTTGGGACATGCTGATCTTCGCAACGCTAGCTGGTGGCCAAAACTCTCTACTCCGGTGGATCTCATCTCCATTCTCACCACCATCATTTGGCTCACATCAGCTCAACACGCTGCCCTAAACTTCGGGCAATACCCTTATGGTGGCTATGTCCCAACCCGCCCACCACACATGAGGAGACTAATTCCAAAAAGCAATGACCCGGAGTATGCTTCTTTCATTAGGGATCCTCAGCAGTACTTCATATACTCATTGCCGAGTTTATTTGAAGCAACGAAGTACATGGCTGTAATTGATATAATCTCGGCACATTCACCGGATGAAGAGTACATTGGGGAGAGAAAAGACTTGTCAAACTGGTCAGCTGACACTGAGATTAGTGAGGCATTTTACAGATTTGCAGTGGAGATGAGGAGGATTGAGAAAGAGATTGCACGAAGAAACGGGGATTTAAGTCTCCGGAATAGATGTGGGGCTGGGGTTTCACCATACGAGCTTCTCATGCCTAGTTCAGAACCTGGGGTTACTTGCAGAGGTGTTCCAAATAGTATAACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

855

Amino Acids

96.54

Weight (kDa)

6.14

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 91 - 174 2e-06 PLAT/LH2 domain
Lipoxygenase PF00305 187 - 838 3.1e-279 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1705
Acc36I ACCTGC 1 cut(s) 1429
AccB1I GGYRCC 1 cut(s) 1098
AccB7I CCANNNNNTGG 1 cut(s) 2097
AccI GTMKAC 2 cut(s) 171, 962
AccII CGCG 1 cut(s) 503
AccIII TCCGGA 1 cut(s) 2466
AciI CCGC 4 cut(s) 14, 90, 886, 2167
AclWI GGATC 4 cut(s) 1686, 2076, 2228, 2241
AcoI YGGCCR 2 cut(s) 995, 2045
AcsI RAATTY 5 cut(s) 797, 1008, 1028, 1037, 2000
AcuI CTGAAG 1 cut(s) 1953
AcyI GRCGYC 2 cut(s) 751, 1099
AfaI GTAC 8 cut(s) 228, 247, 692, 1824, 1994, 2246, 2288, 2336
AfiI CCNNNNNNNGG 7 cut(s) 323, 529, 680, 707, 993, 2097, 2150
AgeI ACCGGT 1 cut(s) 787
AjnI CCWGG 5 cut(s) 285, 345, 382, 1988, 2524
AjuI GAANNNNNNNTTGG 2 cut(s) 2322, 2354
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
Alw21I GWGCWC 2 cut(s) 49, 1413
Alw26I GTCTC 6 cut(s) 542, 691, 797, 1907, 2179, 2468
AlwI GGATC 4 cut(s) 1686, 2076, 2228, 2241
AlwNI CAGNNNCTG 2 cut(s) 1976, 2525
Ama87I CYCGRG 1 cut(s) 1142
Aor13HI TCCGGA 1 cut(s) 2466
AoxI GGCC 4 cut(s) 995, 1225, 1668, 2045
ApeKI GCWGC 5 cut(s) 838, 1483, 1721, 1751, 2120
ApoI RAATTY 5 cut(s) 797, 1008, 1028, 1037, 2000
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AsiGI ACCGGT 1 cut(s) 787
Asp700I GAANNNNTTC 1 cut(s) 1788
AspLEI GCGC 4 cut(s) 505, 1101, 1644, 1773
AspS9I GGNCC 3 cut(s) 478, 1187, 1669
AsuC2I CCSGG 3 cut(s) 994, 999, 2210
AsuHPI GGTGA 7 cut(s) 338, 713, 777, 802, 2077, 2313, 2484
AsuII TTCGAA 1 cut(s) 114
AsuNHI GCTAGC 1 cut(s) 2036
AvaI CYCGRG 1 cut(s) 1142
AvaII GGWCC 2 cut(s) 478, 1187
BalI TGGCCA 1 cut(s) 2047
BamHI GGATCC 1 cut(s) 2233
BanI GGYRCC 1 cut(s) 1098
BanII GRGCYC 2 cut(s) 1413, 1893
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbsI GAAGAC 2 cut(s) 208, 1781
Bbv12I GWGCWC 2 cut(s) 49, 1413
BbvCI CCTCAGC 1 cut(s) 2238
BbvI GCAGC 5 cut(s) 850, 1495, 1708, 1738, 2107
BccI CCATC 2 cut(s) 599, 2099
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 5 cut(s) 287, 347, 384, 1990, 2526
BclI TGATCA 1 cut(s) 52
BcnI CCSGG 3 cut(s) 994, 999, 2210
BcoDI GTCTC 6 cut(s) 542, 691, 797, 1907, 2179, 2468
BfaI CTAG 9 cut(s) 452, 528, 732, 819, 1169, 1283, 1331, 2037, 2514
BfmI CTRYAG 4 cut(s) 102, 233, 918, 1794
BfoI RGCGCY 2 cut(s) 1102, 1774
BfuAI ACCTGC 1 cut(s) 1429
BglII AGATCT 1 cut(s) 1798
BisI GCNGC 5 cut(s) 839, 1484, 1722, 1752, 2121
BlsI GCNGC 5 cut(s) 840, 1485, 1723, 1753, 2122
BmcAI AGTACT 2 cut(s) 247, 2246
Bme1390I CCNGG 8 cut(s) 287, 347, 384, 994, 999, 1990, 2210, 2526
Bme18I GGWCC 2 cut(s) 478, 1187
BmeT110I CYCGRG 1 cut(s) 1142
BmgT120I GGNCC 3 cut(s) 478, 1187, 1669
BmiI GGNNCC 5 cut(s) 388, 479, 1100, 1892, 2235
BmrFI CCNGG 8 cut(s) 287, 347, 384, 994, 999, 1990, 2210, 2526
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 5 cut(s) 369, 1439, 1450, 1504, 1618
BmtI GCTAGC 1 cut(s) 2040
BmuI ACTGGG 1 cut(s) 621
BoxI GACNNNNGTC 1 cut(s) 1833
BpiI GAAGAC 2 cut(s) 208, 1781
Bpu10I CCTNAGC 1 cut(s) 2238
Bpu14I TTCGAA 1 cut(s) 114
BpuEI CTTGAG 2 cut(s) 1176, 1190
BpuMI CCSGG 3 cut(s) 994, 999, 2210
BsaHI GRCGYC 2 cut(s) 751, 1099
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 2 cut(s) 706, 2525
BsaWI WCCGGW 5 cut(s) 787, 1338, 2062, 2323, 2466
BsaXI ACNNNNNCTCC 4 cut(s) 702, 732, 1686, 1716
Bsc4I CCNNNNNNNGG 7 cut(s) 323, 529, 680, 707, 993, 2097, 2150
Bse118I RCCGGY 1 cut(s) 787
Bse1I ACTGG 5 cut(s) 616, 751, 1518, 1547, 2369
Bse3DI GCAATG 6 cut(s) 120, 721, 1107, 1398, 2209, 2258
BseAI TCCGGA 1 cut(s) 2466
BseBI CCWGG 5 cut(s) 287, 347, 384, 1990, 2526
BseDI CCNNGG 2 cut(s) 706, 2525
BseGI GGATG 5 cut(s) 71, 384, 1430, 1609, 2332
BseLI CCNNNNNNNGG 7 cut(s) 323, 529, 680, 707, 993, 2097, 2150
BseMI GCAATG 6 cut(s) 120, 721, 1107, 1398, 2209, 2258
BseMII CTCAG 5 cut(s) 587, 1426, 1589, 2252, 2370
BseNI ACTGG 5 cut(s) 616, 751, 1518, 1547, 2369
BseRI GAGGAG 4 cut(s) 1440, 1883, 2197, 2434
BseX3I CGGCCG 1 cut(s) 995
BseXI GCAGC 5 cut(s) 850, 1495, 1708, 1738, 2107
BseYI CCCAGC 2 cut(s) 557, 2483
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 998
BshFI GGCC 4 cut(s) 997, 1227, 1670, 2047
BshNI GGYRCC 1 cut(s) 1098
BshTI ACCGGT 1 cut(s) 787
BsiEI CGRYCG 1 cut(s) 998
BsiHKAI GWGCWC 2 cut(s) 49, 1413
BsiHKCI CYCGRG 1 cut(s) 1142
BsiSI CCGG 9 cut(s) 788, 994, 998, 1339, 1692, 2063, 2210, 2324, 2467
BslFI GGGAC 4 cut(s) 622, 1711, 2028, 2144
BslI CCNNNNNNNGG 7 cut(s) 323, 529, 680, 707, 993, 2097, 2150
BsmAI GTCTC 6 cut(s) 542, 691, 797, 1907, 2179, 2468
BsmFI GGGAC 4 cut(s) 622, 1711, 2028, 2144
BsnI GGCC 4 cut(s) 997, 1227, 1670, 2047
Bso31I GGTCTC 1 cut(s) 691
BsoBI CYCGRG 1 cut(s) 1142
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 3 cut(s) 49, 1413, 1893
Bsp13I TCCGGA 1 cut(s) 2466
Bsp143I GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
BspACI CCGC 4 cut(s) 14, 90, 886, 2167
BspANI GGCC 4 cut(s) 997, 1227, 1670, 2047
BspCNI CTCAG 5 cut(s) 588, 1425, 1590, 2251, 2371
BspEI TCCGGA 1 cut(s) 2466
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 5 cut(s) 388, 479, 1100, 1892, 2235
BspMAI CTGCAG 3 cut(s) 106, 922, 1798
BspMI ACCTGC 1 cut(s) 1429
BspOI GCTAGC 1 cut(s) 2040
BspPI GGATC 4 cut(s) 1686, 2076, 2228, 2241
BspQI GCTCTTC 1 cut(s) 1206
BspT104I TTCGAA 1 cut(s) 114
BspT107I GGYRCC 1 cut(s) 1098
BspTNI GGTCTC 1 cut(s) 691
BsrDI GCAATG 6 cut(s) 120, 721, 1107, 1398, 2209, 2258
BsrFI RCCGGY 1 cut(s) 787
BsrI ACTGG 5 cut(s) 616, 751, 1518, 1547, 2369
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 2 cut(s) 706, 2525
BssMI GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
BssNAI GTATAC 1 cut(s) 963
BssNI GRCGYC 2 cut(s) 751, 1099
BssT1I CCWWGG 1 cut(s) 706
Bst1107I GTATAC 1 cut(s) 963
Bst2UI CCWGG 5 cut(s) 287, 347, 384, 1990, 2526
Bst4CI ACNGT 7 cut(s) 136, 341, 397, 653, 883, 1702, 2563
Bst6I CTCTTC 5 cut(s) 822, 984, 1206, 1804, 2325
BstACI GRCGYC 2 cut(s) 751, 1099
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 6 cut(s) 102, 466, 1114, 1561, 1622, 2038
BstDEI CTNAG 8 cut(s) 281, 572, 596, 617, 1412, 1598, 2238, 2379
BstF5I GGATG 5 cut(s) 71, 384, 1430, 1609, 2332
BstFNI CGCG 1 cut(s) 503
BstH2I RGCGCY 2 cut(s) 1102, 1774
BstHHI GCGC 4 cut(s) 505, 1101, 1644, 1773
BstKTI GATC 7 cut(s) 55, 490, 1681, 1801, 2026, 2071, 2236
BstMAI GTCTC 6 cut(s) 542, 691, 797, 1907, 2179, 2468
BstMBI GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
BstMCI CGRYCG 1 cut(s) 998
BstMWI GCNNNNNNNGC 8 cut(s) 11, 89, 568, 622, 1483, 2037, 2117, 2509
BstNI CCWGG 5 cut(s) 287, 347, 384, 1990, 2526
BstNSI RCATGY 2 cut(s) 1243, 2021
BstPAI GACNNNNGTC 1 cut(s) 1833
BstSCI CCNGG 8 cut(s) 285, 345, 382, 992, 997, 1988, 2208, 2524
BstSFI CTRYAG 4 cut(s) 102, 233, 918, 1794
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 5 cut(s) 850, 1495, 1708, 1738, 2107
BstV2I GAAGAC 2 cut(s) 208, 1781
BstX2I RGATCY 4 cut(s) 1678, 1798, 2068, 2233
BstXI CCANNNNNNTGG 1 cut(s) 1235
BstYI RGATCY 4 cut(s) 1678, 1798, 2068, 2233
BstZ17I GTATAC 1 cut(s) 963
BstZI CGGCCG 1 cut(s) 995
BsuRI GGCC 4 cut(s) 997, 1227, 1670, 2047
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 5 cut(s) 71, 384, 1430, 1609, 2332
BtsI GCAGTG 2 cut(s) 111, 2415
BtsIMutI CAGTG 7 cut(s) 111, 132, 402, 1525, 1540, 2376, 2415
BveI ACCTGC 1 cut(s) 1429
Cac8I GCNNGC 6 cut(s) 102, 466, 1114, 1561, 1622, 2038
CaiI CAGNNNCTG 2 cut(s) 1976, 2525
CfoI GCGC 4 cut(s) 505, 1101, 1644, 1773
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 3 cut(s) 478, 1187, 1669
CseI GACGC 2 cut(s) 744, 759
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 8 cut(s) 227, 246, 691, 1823, 1993, 2245, 2287, 2335
CspAI ACCGGT 1 cut(s) 787
CviQI GTAC 8 cut(s) 227, 246, 691, 1823, 1993, 2245, 2287, 2335
DdeI CTNAG 8 cut(s) 281, 572, 596, 617, 1412, 1598, 2238, 2379
DinI GGCGCC 1 cut(s) 1100
DpnI GATC 7 cut(s) 54, 489, 1680, 1800, 2025, 2070, 2235
DpnII GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
DrdI GACNNNNNNGTC 1 cut(s) 1705
DseDI GACNNNNNNGTC 1 cut(s) 1705
EaeI YGGCCR 2 cut(s) 995, 2045
EagI CGGCCG 1 cut(s) 995
Eam1104I CTCTTC 5 cut(s) 822, 984, 1206, 1804, 2325
EarI CTCTTC 5 cut(s) 822, 984, 1206, 1804, 2325
Ecl136II GAGCTC 1 cut(s) 1411
EclXI CGGCCG 1 cut(s) 995
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 2 cut(s) 1413, 1893
Eco31I GGTCTC 1 cut(s) 691
Eco47I GGWCC 2 cut(s) 478, 1187
Eco52I CGGCCG 1 cut(s) 995
Eco53kI GAGCTC 1 cut(s) 1411
Eco57I CTGAAG 1 cut(s) 1953
Eco88I CYCGRG 1 cut(s) 1142
EcoICRI GAGCTC 1 cut(s) 1411
EcoRI GAATTC 2 cut(s) 797, 1028
EcoRII CCWGG 5 cut(s) 285, 345, 382, 1988, 2524
EcoT14I CCWWGG 1 cut(s) 706
EcoT22I ATGCAT 1 cut(s) 1611
EcoT38I GRGCYC 2 cut(s) 1413, 1893
EgeI GGCGCC 1 cut(s) 1100
EheI GGCGCC 1 cut(s) 1100
ErhI CCWWGG 1 cut(s) 706
FaqI GGGAC 4 cut(s) 622, 1711, 2028, 2144
FauI CCCGC 1 cut(s) 2174
FauNDI CATATG 1 cut(s) 1898
FbaI TGATCA 1 cut(s) 52
FblI GTMKAC 2 cut(s) 171, 962
Fnu4HI GCNGC 5 cut(s) 839, 1484, 1722, 1752, 2121
FokI GGATG 5 cut(s) 58, 391, 1417, 1596, 2339
FriOI GRGCYC 2 cut(s) 1413, 1893
Fsp4HI GCNGC 5 cut(s) 839, 1484, 1722, 1752, 2121
FspBI CTAG 9 cut(s) 452, 528, 732, 819, 1169, 1283, 1331, 2037, 2514
GlaI GCGC 4 cut(s) 504, 1100, 1643, 1772
GluI GCNGC 5 cut(s) 839, 1484, 1722, 1752, 2121
GsaI CCCAGC 2 cut(s) 561, 2487
HaeII RGCGCY 2 cut(s) 1102, 1774
HaeIII GGCC 4 cut(s) 997, 1227, 1670, 2047
HapII CCGG 9 cut(s) 788, 994, 998, 1339, 1692, 2063, 2210, 2324, 2467
HgaI GACGC 2 cut(s) 744, 759
HhaI GCGC 4 cut(s) 505, 1101, 1644, 1773
Hin1I GRCGYC 2 cut(s) 751, 1099
Hin6I GCGC 4 cut(s) 503, 1099, 1642, 1771
HinP1I GCGC 4 cut(s) 503, 1099, 1642, 1771
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HindIII AAGCTT 3 cut(s) 1271, 1344, 1622
HpaII CCGG 9 cut(s) 788, 994, 998, 1339, 1692, 2063, 2210, 2324, 2467
HphI GGTGA 7 cut(s) 338, 713, 777, 802, 2077, 2313, 2484
Hpy166II GTNNAC 7 cut(s) 61, 172, 364, 457, 721, 963, 1024
Hpy188I TCNGA 9 cut(s) 153, 318, 492, 631, 866, 946, 1423, 1972, 2521
Hpy188III TCNNGA 9 cut(s) 50, 674, 802, 1193, 1331, 1372, 1760, 1865, 2467
Hpy8I GTNNAC 7 cut(s) 61, 172, 364, 457, 721, 963, 1024
HpyAV CCTTC 4 cut(s) 148, 440, 1648, 1778
HpyCH4III ACNGT 7 cut(s) 136, 341, 397, 653, 883, 1702, 2563
HpyCH4IV ACGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 89, 568, 622, 1483, 2037, 2117, 2509
HpyF3I CTNAG 8 cut(s) 281, 572, 596, 617, 1412, 1598, 2238, 2379
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 2 cut(s) 751, 1099
HspAI GCGC 4 cut(s) 503, 1099, 1642, 1771
KasI GGCGCC 1 cut(s) 1098
Kpn2I TCCGGA 1 cut(s) 2466
Ksp22I TGATCA 1 cut(s) 52
Kzo9I GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
LguI GCTCTTC 1 cut(s) 1206
LmnI GCTCC 3 cut(s) 386, 1511, 1896
Lsp1109I GCAGC 5 cut(s) 850, 1495, 1708, 1738, 2107
LweI GCATC 5 cut(s) 369, 1439, 1450, 1504, 1618
MabI ACCWGGT 1 cut(s) 345
MaeI CTAG 9 cut(s) 452, 528, 732, 819, 1169, 1283, 1331, 2037, 2514
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 9 cut(s) 67, 106, 341, 401, 653, 783, 1545, 1963, 2530
MalI GATC 7 cut(s) 54, 489, 1680, 1800, 2025, 2070, 2235
MboI GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
MfeI CAATTG 2 cut(s) 1455, 1908
MflI RGATCY 4 cut(s) 1678, 1798, 2068, 2233
MhlI GDGCHC 3 cut(s) 49, 1413, 1893
MlsI TGGCCA 1 cut(s) 2047
MluNI TGGCCA 1 cut(s) 2047
Mly113I GGCGCC 1 cut(s) 1099
MlyI GAGTC 3 cut(s) 359, 791, 1715
MmeI TCCRAC 3 cut(s) 505, 782, 844
Mox20I TGGCCA 1 cut(s) 2047
Mph1103I ATGCAT 1 cut(s) 1611
MroI TCCGGA 1 cut(s) 2466
MroXI GAANNNNTTC 1 cut(s) 1788
MscI TGGCCA 1 cut(s) 2047
MseI TTAA 6 cut(s) 27, 438, 1055, 1127, 1935, 2459
MslI CAYNNNNRTG 1 cut(s) 395
Msp20I TGGCCA 1 cut(s) 2047
MspA1I CMGCKG 2 cut(s) 557, 2372
MspI CCGG 9 cut(s) 788, 994, 998, 1339, 1692, 2063, 2210, 2324, 2467
MspR9I CCNGG 8 cut(s) 287, 347, 384, 994, 999, 1990, 2210, 2526
MunI CAATTG 2 cut(s) 1455, 1908
MvaI CCWGG 5 cut(s) 287, 347, 384, 1990, 2526
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 8 cut(s) 11, 89, 568, 622, 1483, 2037, 2117, 2509
NarI GGCGCC 1 cut(s) 1099
NciI CCSGG 3 cut(s) 994, 999, 2210
NdeI CATATG 1 cut(s) 1898
NdeII GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
NheI GCTAGC 1 cut(s) 2036
NlaIV GGNNCC 5 cut(s) 388, 479, 1100, 1892, 2235
NmeAIII GCCGAG 2 cut(s) 2289, 2291
NmuCI GTSAC 3 cut(s) 106, 783, 1963
NsiI ATGCAT 1 cut(s) 1611
NspI RCATGY 2 cut(s) 1243, 2021
NspV TTCGAA 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 1142
PciSI GCTCTTC 1 cut(s) 1206
PdmI GAANNNNTTC 1 cut(s) 1788
PfeI GAWTC 7 cut(s) 22, 313, 513, 589, 968, 1196, 1424
PflFI GACNNNGTC 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 2097
PinAI ACCGGT 1 cut(s) 787
PkrI GCNGC 5 cut(s) 840, 1485, 1723, 1753, 2122
PleI GAGTC 3 cut(s) 359, 790, 1714
PluTI GGCGCC 1 cut(s) 1102
PpsI GAGTC 3 cut(s) 359, 790, 1714
PshAI GACNNNNGTC 1 cut(s) 1833
Psp124BI GAGCTC 1 cut(s) 1413
Psp6I CCWGG 5 cut(s) 285, 345, 382, 1988, 2524
PspFI CCCAGC 2 cut(s) 557, 2483
PspGI CCWGG 5 cut(s) 285, 345, 382, 1988, 2524
PspN4I GGNNCC 5 cut(s) 388, 479, 1100, 1892, 2235
PspPI GGNCC 3 cut(s) 478, 1187, 1669
PspXI VCTCGAGB 1 cut(s) 1142
PstI CTGCAG 3 cut(s) 106, 922, 1798
PstNI CAGNNNCTG 2 cut(s) 1976, 2525
PsuI RGATCY 4 cut(s) 1678, 1798, 2068, 2233
PsyI GACNNNGTC 1 cut(s) 738
PvuII CAGCTG 2 cut(s) 557, 2372
RsaI GTAC 8 cut(s) 228, 247, 692, 1824, 1994, 2246, 2288, 2336
RsaNI GTAC 8 cut(s) 227, 246, 691, 1823, 1993, 2245, 2287, 2335
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 1413
SalI GTCGAC 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 1206
SaqAI TTAA 6 cut(s) 27, 438, 1055, 1127, 1935, 2459
SatI GCNGC 5 cut(s) 839, 1484, 1722, 1752, 2121
Sau3AI GATC 7 cut(s) 52, 487, 1678, 1798, 2023, 2068, 2233
Sau96I GGNCC 3 cut(s) 478, 1187, 1669
ScaI AGTACT 2 cut(s) 247, 2246
SchI GAGTC 3 cut(s) 359, 791, 1715
ScrFI CCNGG 8 cut(s) 287, 347, 384, 994, 999, 1990, 2210, 2526
SduI GDGCHC 3 cut(s) 49, 1413, 1893
SexAI ACCWGGT 1 cut(s) 345
SfaNI GCATC 5 cut(s) 369, 1439, 1450, 1504, 1618
SfcI CTRYAG 4 cut(s) 102, 233, 918, 1794
SfoI GGCGCC 1 cut(s) 1100
Sfr274I CTCGAG 1 cut(s) 1142
SfuI TTCGAA 1 cut(s) 114
SgrAI CRCCGGYG 1 cut(s) 787
SinI GGWCC 2 cut(s) 478, 1187
SlaI CTCGAG 1 cut(s) 1142
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 3 cut(s) 1142, 1191, 1205
SmoI CTYRAG 3 cut(s) 1142, 1191, 1205
SsiI CCGC 4 cut(s) 14, 90, 886, 2167
SspDI GGCGCC 1 cut(s) 1098
SspI AATATT 1 cut(s) 145
SspMI CTAG 9 cut(s) 452, 528, 732, 819, 1169, 1283, 1331, 2037, 2514
SstI GAGCTC 1 cut(s) 1413
StyD4I CCNGG 8 cut(s) 285, 345, 382, 992, 997, 1988, 2208, 2524
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 7 cut(s) 136, 341, 397, 653, 883, 1702, 2563
TaiI ACGT 1 cut(s) 12
TaqI TCGA 7 cut(s) 114, 171, 742, 801, 1143, 1704, 1759
TatI WGTACW 5 cut(s) 245, 690, 2244, 2286, 2334
TfiI GAWTC 7 cut(s) 22, 313, 513, 589, 968, 1196, 1424
Tru1I TTAA 6 cut(s) 27, 438, 1055, 1127, 1935, 2459
Tru9I TTAA 6 cut(s) 27, 438, 1055, 1127, 1935, 2459
TscAI CASTG 7 cut(s) 111, 139, 402, 1525, 1547, 2383, 2415
TseFI GTSAC 3 cut(s) 106, 783, 1963
TseI GCWGC 5 cut(s) 838, 1483, 1721, 1751, 2120
Tsp45I GTSAC 3 cut(s) 106, 783, 1963
TspRI CASTG 7 cut(s) 111, 139, 402, 1525, 1547, 2383, 2415
Tth111I GACNNNGTC 1 cut(s) 738
Van91I CCANNNNNTGG 1 cut(s) 2097
VpaK11BI GGWCC 2 cut(s) 478, 1187
XapI RAATTY 5 cut(s) 797, 1008, 1028, 1037, 2000
XbaI TCTAGA 1 cut(s) 1330
XceI RCATGY 2 cut(s) 1243, 2021
XhoI CTCGAG 1 cut(s) 1142
XmiI GTMKAC 2 cut(s) 171, 962
XmnI GAANNNNTTC 1 cut(s) 1788
XspI CTAG 9 cut(s) 452, 528, 732, 819, 1169, 1283, 1331, 2037, 2514
ZrmI AGTACT 2 cut(s) 247, 2246
Zsp2I ATGCAT 1 cut(s) 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.