Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000650

Physical Location & Seq

Genomic Coordinates Reverse (-)

46022086 .. 46022394

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1339200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTTGCTGTTGCATATCAGTCTGATACCCTTAAAATATGGCAGGTATGTCTCGGCCCGCCCACCATACATGCGGCGATTATTGCCGCAAGAGCATGACCCAGAGTATGCTGCTTTCATAAGGGATCCACAGAAATACTTCCTAGCATCAGTGTCAGGTTTATTTGAAGCAACCAAGTACATGGCTGTAATAGAGATCCTTTCAACGCACTCACCGGATGAGGAGTATATTGGGGGGAGAAAAGACTTCTCAACCTGGTCAGCTGGCATGGTGATCACTGAGGCTTTCTACAGATTTCCAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

103

Amino Acids

11.89

Weight (kDa)

8.0

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	12 - 100	3e-23	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17420 AT1G72520
fragaria_vesca	FvH4_4g01390 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970
malus_domestica	MD05G1339200.v1.1 MD05G1339300.v1.1 MD05G1339400.v1.1 MD09G1180900.v1.1 MD10G1294000.v1.1 MD17G1167100.v1.1
prunus_persica	Prupe.3G039200_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1
pyrus_communis	pycom09g09820 pycom09g09830 pycom10g24590 pycom17g15900
rosa_chinensis	RchiOBHm_Chr2g0145961 RchiOBHm_Chr3g0472481 RchiOBHm_Chr5g0008481 RchiOBHm_Chr5g0008501 RchiOBHm_Chr5g0008511
rosa_laevigata	RLG00000020179 RLG00000024076 RLG00000031573 RLG00000031574 RLG00000031576
rosa_multiflora	Rmu_sc0001665.1_g000013 Rmu_sc0001702.1_g000033 Rmu_sc0002145.1_g000002 Rmu_sc0034682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434820 Rroxscaffold_2G00100350
rosa_rugosa	Rorug02G0393500 Rorug03G0125900 Rorug04G0435900.1 Rorug04G0436000 Rorug04G0436400 Rorug04G0436400 Rorug04G0436500
rosa_samantha	Rh2BG460800 Rh2DG470100 Rh3AG177700 Rh3BG203600 Rh3CG194000 Rh3CG201100 Rh3DG171500 Rh5AG064800 Rh5AG064900 Rh5AG065200 Rh5BG061900 Rh5BG062100 Rh5BG062300 Rh5BG062400 Rh5BG062500 Rh5CG072000 Rh5CG072200 Rh5CG072300 Rh5CG072400 Rh5CG072600 Rh5CG072800 Rh5DG063500 Rh5DG063700 Rh5DG063900
rosa_wichuraiana	Rw2G036640 Rw3G016380 Rw5G005580 Rw5G005590 Rw5G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AciI	CCGC	3 cut(s)	58, 73, 86
AclWI	GGATC	3 cut(s)	119, 132, 190
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	167, 204
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	119, 132, 190
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	204, 283
BamHI	GGATCC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	256
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	33
BisI	GCNGC	3 cut(s)	74, 86, 111
BlsI	GCNGC	3 cut(s)	75, 87, 112
Bme1390I	CCNGG	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	155
BsaWI	WCCGGW	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	124, 195, 273
BspACI	CCGC	3 cut(s)	58, 73, 86
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	126
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	3 cut(s)	119, 132, 190
BssMI	GATC	3 cut(s)	124, 195, 273
Bst2UI	CCWGG	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	58, 265
BstDEI	CTNAG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	3 cut(s)	127, 198, 276
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	124, 195, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 91
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	254
BstSFI	CTRYAG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	124, 195
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	2 cut(s)	124, 195
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	156, 276
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	58, 265
Cfr13I	GGNCC	1 cut(s)	55
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	4 cut(s)	70, 95, 181, 268
CviJI	RGCY	4 cut(s)	56, 185, 263, 284
CviKI_1	RGCY	4 cut(s)	56, 185, 263, 284
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	126, 197, 275
DpnII	GATC	3 cut(s)	124, 195, 273
EcoRII	CCWGG	1 cut(s)	254
FaeI	CATG	4 cut(s)	73, 98, 184, 271
FatI	CATG	4 cut(s)	69, 94, 180, 267
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	74, 86, 111
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	74, 86, 111
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	3 cut(s)	74, 86, 111
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	4 cut(s)	73, 98, 184, 271
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	2 cut(s)	204, 283
Hpy188I	TCNGA	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 91
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	73, 98, 184, 271
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	124, 195, 273
LpnPI	CCDG	7 cut(s)	28, 114, 141, 228, 241, 249, 268
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	155
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	1 cut(s)	143
MalI	GATC	3 cut(s)	126, 197, 275
MboI	GATC	3 cut(s)	124, 195, 273
MflI	RGATCY	2 cut(s)	124, 195
MnlI	CCTC	2 cut(s)	214, 274
MroXI	GAANNNNTTC	1 cut(s)	137
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	82, 91
NdeII	GATC	3 cut(s)	124, 195, 273
NlaIII	CATG	4 cut(s)	73, 98, 184, 271
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	1 cut(s)	32
NspI	RCATGY	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	75, 87, 112
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	124, 195
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	3 cut(s)	74, 86, 111
Sau3AI	GATC	3 cut(s)	124, 195, 273
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	256
SetI	ASST	4 cut(s)	47, 160, 257, 265
SexAI	ACCWGGT	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	155
SfcI	CTRYAG	1 cut(s)	289
SsiI	CCGC	3 cut(s)	58, 73, 86
SspMI	CTAG	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	254
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	2 cut(s)	76, 88
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	2 cut(s)	156, 283
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	156, 283
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.