Rh5DG063900

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000650
Physical Location & Seq
Reverse (-)
5475053 .. 5477017
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG063900.1

Sequence Viewer

Length: 771 bp
ATGCCTTCGGAACTCGCAGCAGGATCCGTTGATGTTGCAGTTGATGCGGCTTCAGAGAATGCGAAGCAGCAGCCTGCACTGACTTTGGAACTCACTGCGCTAGTAACTATCAAAAGGAAAAGTGAAAAGAAGTTAAATACTATGAAAGACATGATGCTTAGGCCGCTTGGCAATTATGCTTCACCAAATGGCCATGGTGATCATCATAAGCACTGGGGTGCTGTCCTACAGCTTGTTAGTACTCAAATCCACACAAAGGAAATGAAGCCAAACCTGAGTGAGGAAGCTATATTGGATTGGAATTTGAAAATGGGTGCCGGGAAGACCAGTACTTACCAAGTTAAATTTGTGGTGGATTCTAACCTTGGGATGCCAGGAGCCACCACGGTTAGCAACAGAGACCAGAGCGAGTTCTATTTGGATAGCATCAACATTGAAGGTGTTATTAATTTTGCCTGCAACTCTTGGGTTCAACCAGAGTGCAAAAACCCAGCAAAAAGAATCTTCTTCTCTACCAATAAGGCATACTTACCTAGTGAAACACCAGCAGGGCTGAAAGAACTAAGAAAAATGGAGCTAATTCAACAGAGGGGTGATGGAACAGGATTTCGAAAACCATCTGATAGAATATACGATTATGACACTTACAATGACATTGGAAATCCTGATATTGGATACATAAGGCCCATCCTTGGAGGCAACAGACACCCATACCCTAGACGCTGTCGAACTGGAAGGCCTCGAACCATGACAGGTGACGCCTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

256

Amino Acids

28.5

Weight (kDa)

9.01

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 98 - 170 2.1e-07 PLAT/LH2 domain
Lipoxygenase PF00305 184 - 251 2.5e-25 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 2 cut(s) 47, 164
AclWI GGATC 2 cut(s) 18, 31
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 301, 344
AcuI CTGAAG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 759
AfaI GTAC 2 cut(s) 241, 331
AfiI CCNNNNNNNGG 4 cut(s) 256, 280, 671, 692
AgsI TTSAA 4 cut(s) 307, 437, 473, 584
AjnI CCWGG 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 3 cut(s) 232, 287, 577
AluI AGCT 3 cut(s) 232, 287, 577
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 2 cut(s) 18, 31
AoxI GGCC 4 cut(s) 161, 190, 683, 737
ApeKI GCWGC 3 cut(s) 17, 67, 70
ApoI RAATTY 2 cut(s) 301, 344
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 684
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 4 cut(s) 174, 209, 605, 767
AsuII TTCGAA 1 cut(s) 610
BalI TGGCCA 1 cut(s) 192
BamHI GGATCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 29, 79, 82
BccI CCATC 3 cut(s) 590, 625, 695
BciT130I CCWGG 1 cut(s) 375
BciVI GTATCC 1 cut(s) 668
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 3 cut(s) 101, 534, 717
BfmI CTRYAG 1 cut(s) 227
BfuI GTATCC 1 cut(s) 668
BisI GCNGC 5 cut(s) 18, 48, 68, 71, 164
BlsI GCNGC 5 cut(s) 19, 49, 69, 72, 165
BmcAI AGTACT 2 cut(s) 241, 331
Bme1390I CCNGG 2 cut(s) 319, 375
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 3 cut(s) 25, 316, 379
BmrFI CCNGG 2 cut(s) 319, 375
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 4 cut(s) 34, 144, 360, 435
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 329
Bpu10I CCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 319
BsaHI GRCGYC 1 cut(s) 759
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 4 cut(s) 193, 364, 384, 691
Bsc4I CCNNNNNNNGG 4 cut(s) 256, 280, 671, 692
Bse1I ACTGG 3 cut(s) 218, 327, 736
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 4 cut(s) 193, 364, 384, 691
BseGI GGATG 2 cut(s) 375, 687
BseLI CCNNNNNNNGG 4 cut(s) 256, 280, 671, 692
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 3 cut(s) 218, 327, 736
BseXI GCAGC 3 cut(s) 29, 79, 82
BseYI CCCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 4 cut(s) 163, 192, 685, 739
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 4 cut(s) 256, 280, 671, 692
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 4 cut(s) 163, 192, 685, 739
Bso31I GGTCTC 1 cut(s) 393
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 2 cut(s) 23, 199
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 2 cut(s) 47, 164
BspANI GGCC 4 cut(s) 163, 192, 685, 739
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 25, 316, 379
BspPI GGATC 2 cut(s) 18, 31
BspT104I TTCGAA 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 393
BsrI ACTGG 3 cut(s) 218, 327, 736
BssECI CCNNGG 4 cut(s) 193, 364, 384, 691
BssMI GATC 2 cut(s) 23, 199
BssNI GRCGYC 1 cut(s) 759
BssT1I CCWWGG 3 cut(s) 193, 364, 691
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 388
BstACI GRCGYC 1 cut(s) 759
BstAPI GCANNNNNTGC 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 2 cut(s) 75, 457
BstDEI CTNAG 4 cut(s) 158, 275, 563, 763
BstDSI CCRYGG 2 cut(s) 193, 384
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 375, 687
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 26, 202
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 2 cut(s) 23, 199
BstMWI GCNNNNNNNGC 2 cut(s) 44, 163
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 317, 373
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 29, 79, 82
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 4 cut(s) 163, 192, 685, 739
BtgI CCRYGG 2 cut(s) 193, 384
BtsCI GGATG 2 cut(s) 375, 687
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 3 cut(s) 77, 93, 211
Cac8I GCNNGC 2 cut(s) 75, 457
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 684
CseI GACGC 1 cut(s) 729
Csp6I GTAC 2 cut(s) 240, 330
CviAII CATG 3 cut(s) 151, 194, 748
CviQI GTAC 2 cut(s) 240, 330
DdeI CTNAG 4 cut(s) 158, 275, 563, 763
DpnI GATC 2 cut(s) 25, 201
DpnII GATC 2 cut(s) 23, 199
EaeI YGGCCR 1 cut(s) 190
Eco130I CCWWGG 3 cut(s) 193, 364, 691
Eco147I AGGCCT 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 193, 364, 691
ErhI CCWWGG 3 cut(s) 193, 364, 691
FaeI CATG 3 cut(s) 154, 197, 751
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FatI CATG 3 cut(s) 150, 193, 747
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FokI GGATG 2 cut(s) 382, 674
Fsp4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FspBI CTAG 3 cut(s) 101, 534, 717
GlaI GCGC 1 cut(s) 99
GluI GCNGC 5 cut(s) 18, 48, 68, 71, 164
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 4 cut(s) 163, 192, 685, 739
HapII CCGG 1 cut(s) 318
HgaI GACGC 1 cut(s) 729
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 759
Hin1II CATG 3 cut(s) 154, 197, 751
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 2 cut(s) 356, 501
HpaII CCGG 1 cut(s) 318
HphI GGTGA 4 cut(s) 174, 209, 605, 767
Hpy188I TCNGA 3 cut(s) 10, 55, 622
Hpy188III TCNNGA 1 cut(s) 665
HpyAV CCTTC 3 cut(s) 15, 431, 729
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 4 cut(s) 38, 77, 459, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 163
HpyF3I CTNAG 4 cut(s) 158, 275, 563, 763
Hsp92I GRCGYC 1 cut(s) 759
Hsp92II CATG 3 cut(s) 154, 197, 751
HspAI GCGC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 23, 199
LmnI GCTCC 2 cut(s) 377, 574
Lsp1109I GCAGC 3 cut(s) 29, 79, 82
LweI GCATC 4 cut(s) 34, 144, 360, 435
MaeI CTAG 3 cut(s) 101, 534, 717
MaeIII GTNAC 2 cut(s) 103, 755
MalI GATC 2 cut(s) 25, 201
MboI GATC 2 cut(s) 23, 199
MboII GAAGA 3 cut(s) 334, 496, 499
MflI RGATCY 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 5 cut(s) 172, 301, 344, 448, 579
MluNI TGGCCA 1 cut(s) 192
MnlI CCTC 4 cut(s) 274, 582, 689, 750
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 4 cut(s) 134, 342, 447, 769
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 319, 375
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 44, 163
NciI CCSGG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 193
NdeII GATC 2 cut(s) 23, 199
NlaIII CATG 3 cut(s) 154, 197, 751
NlaIV GGNNCC 3 cut(s) 25, 316, 379
NmuCI GTSAC 1 cut(s) 755
NspV TTCGAA 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 216
PceI AGGCCT 1 cut(s) 739
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 356, 501
PflFI GACNNNGTC 1 cut(s) 723
PkrI GCNGC 5 cut(s) 19, 49, 69, 72, 165
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 25, 316, 379
PspPI GGNCC 1 cut(s) 684
PsuI RGATCY 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 723
RsaI GTAC 2 cut(s) 241, 331
RsaNI GTAC 2 cut(s) 240, 330
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 4 cut(s) 134, 342, 447, 769
SatI GCNGC 5 cut(s) 18, 48, 68, 71, 164
Sau3AI GATC 2 cut(s) 23, 199
Sau96I GGNCC 1 cut(s) 684
ScaI AGTACT 2 cut(s) 241, 331
ScrFI CCNGG 2 cut(s) 319, 375
SetI ASST 8 cut(s) 234, 276, 289, 366, 442, 535, 579, 757
SfaNI GCATC 4 cut(s) 34, 144, 360, 435
SfcI CTRYAG 1 cut(s) 227
SfuI TTCGAA 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 5 cut(s) 172, 301, 344, 448, 579
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 2 cut(s) 47, 164
SspMI CTAG 3 cut(s) 101, 534, 717
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 2 cut(s) 317, 373
StyI CCWWGG 3 cut(s) 193, 364, 691
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 3 cut(s) 610, 727, 742
TasI AATT 5 cut(s) 172, 301, 344, 448, 579
TatI WGTACW 2 cut(s) 239, 329
TauI GCSGC 2 cut(s) 50, 166
TfiI GAWTC 2 cut(s) 356, 501
Tru1I TTAA 4 cut(s) 134, 342, 447, 769
Tru9I TTAA 4 cut(s) 134, 342, 447, 769
TscAI CASTG 3 cut(s) 84, 100, 218
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 3 cut(s) 17, 67, 70
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 2 cut(s) 158, 278
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 3 cut(s) 84, 100, 218
Tth111I GACNNNGTC 1 cut(s) 723
VspI ATTAAT 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 2 cut(s) 301, 344
XspI CTAG 3 cut(s) 101, 534, 717
ZrmI AGTACT 2 cut(s) 241, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.