Rh5AG065200

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000650
Physical Location & Seq
Forward (+)
5454979 .. 5456416
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG065200.1

Sequence Viewer

Length: 885 bp
ATGCCTTTGGAACTTGCAGCAGGATCCGATGATGTAGCAGTTGATGCAGCTTCAGAGAATGCGAAGCGGCAGCCTGCACTGCCTTTGGAACTCATTGCTCTAGTCACTGTCAAAAGGAAAAGTGAAAATAAGTTAAATACTATGAAAGACATGATGCTTAGGCTGCTTGGCAATTATGCTTCACCTAATGGCCAGGGTGATCATCATCATCACAAGGGTGTTGTCCTACAGCTTGTTAGTACACAAATCCACACAAAGGAAATGAAGCCAAAGCTGAGTGAGGAAGCAATATTACATTGGACAGAGACTTTGAAAATGGGTGCTGGGAAGTGCATTACTTACCAAGTTAAATTTGTGGTGGATTCAAACTTTGGGATGCCAGGAGCCATCACAGTCAGCAACAGATACAACAGCGAATTTTATTTAGATAGTATCAACATCGAAGGTGTTGTTCATTTTGCCTGCAACTCTTGGGTTCAATCAGAGCATGCTAACCCTGCAAAAAGAGTCTTCTTTTCTACCAAGCTAGCATTTGACATCCAAGTTCTTAATTCAACAGATGAGAAACTGGAGTCACCAGTAAATGAATTCTCGACACTTTATGTGCCTAGAGATGAAGAGTTTGAAGAGTCCAAGAGAGAAGCTTTTGATCTTGGAAGGTTAAAGGCAATTATGAGGCACATTATTCCTGCACTAACAAAAGTTGCCAGGGATAGTGATGAATTCAAGGCATATTCAGACATAACTGGTCTGTATAGAGACGGCATGCCTTCAATAACAAAGAATATGAGGAATCTTCCCTTGCCAAATATTTTGAACAAAGTCCAGGAATACCTAAAATTTGACCCAACAAAATTAAACTCAAGTAAGGACCGTCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

294

Amino Acids

33.17

Weight (kDa)

6.77

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 93 - 172 3.8e-08 PLAT/LH2 domain
Lipoxygenase PF00305 185 - 275 3e-12 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 18, 31
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 5 cut(s) 350, 416, 587, 722, 839
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 8 cut(s) 313, 366, 479, 555, 626, 727, 774, 817
AjnI CCWGG 4 cut(s) 192, 379, 707, 825
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 5 cut(s) 50, 232, 274, 526, 644
AluI AGCT 5 cut(s) 50, 232, 274, 526, 644
Alw26I GTCTC 2 cut(s) 299, 753
AlwI GGATC 2 cut(s) 18, 31
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 4 cut(s) 17, 47, 70, 163
ApoI RAATTY 5 cut(s) 350, 416, 587, 722, 839
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AspS9I GGNCC 1 cut(s) 871
AsuHPI GGTGA 3 cut(s) 174, 209, 567
AsuNHI GCTAGC 1 cut(s) 526
AvaII GGWCC 1 cut(s) 871
BalI TGGCCA 1 cut(s) 192
BamHI GGATCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 276, 308
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 29, 59, 82, 150
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 778
BciT130I CCWGG 4 cut(s) 194, 381, 709, 827
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 299, 753
BfaI CTAG 3 cut(s) 101, 527, 609
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 5 cut(s) 18, 48, 68, 71, 164
BlsI GCNGC 5 cut(s) 19, 49, 69, 72, 165
Bme1390I CCNGG 4 cut(s) 194, 381, 709, 827
Bme18I GGWCC 1 cut(s) 871
BmgT120I GGNCC 1 cut(s) 871
BmiI GGNNCC 2 cut(s) 25, 385
BmrFI CCNGG 4 cut(s) 194, 381, 709, 827
BmsI GCATC 3 cut(s) 34, 144, 366
BmtI GCTAGC 1 cut(s) 530
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 590
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 193, 708
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 3 cut(s) 573, 578, 751
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 4 cut(s) 194, 381, 709, 827
BseDI CCNNGG 2 cut(s) 193, 708
BseGI GGATG 2 cut(s) 381, 537
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 3 cut(s) 573, 578, 751
BseXI GCAGC 4 cut(s) 29, 59, 82, 150
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 2 cut(s) 60, 675
BshFI GGCC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 299, 753
BsmBI CGTCTC 1 cut(s) 753
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 23, 199, 649
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 25, 385
BspOI GCTAGC 1 cut(s) 530
BspPI GGATC 2 cut(s) 18, 31
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 3 cut(s) 573, 578, 751
BssECI CCNNGG 2 cut(s) 193, 708
BssMI GATC 3 cut(s) 23, 199, 649
Bst2UI CCWGG 4 cut(s) 194, 381, 709, 827
Bst4CI ACNGT 3 cut(s) 109, 394, 875
Bst6I CTCTTC 2 cut(s) 612, 621
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 5 cut(s) 75, 463, 489, 528, 767
BstDEI CTNAG 2 cut(s) 158, 275
BstF5I GGATG 2 cut(s) 381, 537
BstKTI GATC 3 cut(s) 26, 202, 652
BstMAI GTCTC 2 cut(s) 299, 753
BstMBI GATC 3 cut(s) 23, 199, 649
BstMWI GCNNNNNNNGC 4 cut(s) 44, 79, 163, 497
BstNI CCWGG 4 cut(s) 194, 381, 709, 827
BstNSI RCATGY 2 cut(s) 491, 769
BstSCI CCNGG 4 cut(s) 192, 379, 707, 825
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 29, 59, 82, 150
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 381, 537
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 2 cut(s) 77, 105
Cac8I GCNNGC 5 cut(s) 75, 463, 489, 528, 767
Cfr13I GGNCC 1 cut(s) 871
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 151, 488, 766
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 158, 275
DpnI GATC 3 cut(s) 25, 201, 651
DpnII GATC 3 cut(s) 23, 199, 649
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 612, 621
EarI CTCTTC 2 cut(s) 612, 621
Eco47I GGWCC 1 cut(s) 871
Eco57I CTGAAG 1 cut(s) 36
EcoRI GAATTC 2 cut(s) 587, 722
EcoRII CCWGG 4 cut(s) 192, 379, 707, 825
Esp3I CGTCTC 1 cut(s) 753
FaeI CATG 3 cut(s) 154, 491, 769
FatI CATG 3 cut(s) 150, 487, 765
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FokI GGATG 2 cut(s) 388, 524
Fsp4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FspBI CTAG 3 cut(s) 101, 527, 609
GluI GCNGC 5 cut(s) 18, 48, 68, 71, 164
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 590
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 3 cut(s) 154, 491, 769
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 5 cut(s) 362, 507, 572, 629, 793
HphI GGTGA 3 cut(s) 174, 209, 567
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 4 cut(s) 28, 55, 484, 739
Hpy188III TCNNGA 1 cut(s) 592
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 437, 651, 780
HpyCH4III ACNGT 3 cut(s) 109, 394, 875
HpyCH4V TGCA 7 cut(s) 17, 47, 77, 333, 465, 500, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 79, 163, 497
HpyF3I CTNAG 2 cut(s) 158, 275
Hsp92II CATG 3 cut(s) 154, 491, 769
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 23, 199, 649
LmnI GCTCC 1 cut(s) 383
Lsp1109I GCAGC 4 cut(s) 29, 59, 82, 150
LweI GCATC 3 cut(s) 34, 144, 366
MaeI CTAG 3 cut(s) 101, 527, 609
MaeIII GTNAC 2 cut(s) 103, 573
MalI GATC 3 cut(s) 25, 201, 651
MboI GATC 3 cut(s) 23, 199, 649
MboII GAAGA 4 cut(s) 502, 629, 638, 788
MflI RGATCY 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 9 cut(s) 172, 350, 416, 550, 587, 669, 722, 839, 854
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 3 cut(s) 516, 581, 638
MnlI CCTC 3 cut(s) 274, 669, 783
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 5 cut(s) 134, 348, 549, 662, 857
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 192
MspR9I CCNGG 4 cut(s) 194, 381, 709, 827
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 4 cut(s) 194, 381, 709, 827
MwoI GCNNNNNNNGC 4 cut(s) 44, 79, 163, 497
NdeII GATC 3 cut(s) 23, 199, 649
NheI GCTAGC 1 cut(s) 526
NlaIII CATG 3 cut(s) 154, 491, 769
NlaIV GGNNCC 2 cut(s) 25, 385
NmuCI GTSAC 2 cut(s) 103, 573
NspI RCATGY 2 cut(s) 491, 769
OliI CACNNNNGTG 1 cut(s) 216
PaeI GCATGC 2 cut(s) 491, 769
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 362, 793
PfoI TCCNGGA 1 cut(s) 825
PkrI GCNGC 5 cut(s) 19, 49, 69, 72, 165
PleI GAGTC 3 cut(s) 515, 580, 637
PpsI GAGTC 3 cut(s) 515, 580, 637
Psp6I CCWGG 4 cut(s) 192, 379, 707, 825
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 4 cut(s) 192, 379, 707, 825
PspN4I GGNNCC 2 cut(s) 25, 385
PspPI GGNCC 1 cut(s) 871
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 5 cut(s) 134, 348, 549, 662, 857
SatI GCNGC 5 cut(s) 18, 48, 68, 71, 164
Sau3AI GATC 3 cut(s) 23, 199, 649
Sau96I GGNCC 1 cut(s) 871
SchI GAGTC 3 cut(s) 516, 581, 638
ScrFI CCNGG 4 cut(s) 194, 381, 709, 827
SetI ASST 9 cut(s) 52, 187, 234, 276, 448, 528, 646, 662, 837
SfaNI GCATC 3 cut(s) 34, 144, 366
SfcI CTRYAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 871
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SphI GCATGC 2 cut(s) 491, 769
Sse9I AATT 9 cut(s) 172, 350, 416, 550, 587, 669, 722, 839, 854
SsiI CCGC 1 cut(s) 67
SspI AATATT 2 cut(s) 291, 811
SspMI CTAG 3 cut(s) 101, 527, 609
StyD4I CCNGG 4 cut(s) 192, 379, 707, 825
TaaI ACNGT 3 cut(s) 109, 394, 875
TaqI TCGA 2 cut(s) 441, 593
TasI AATT 9 cut(s) 172, 350, 416, 550, 587, 669, 722, 839, 854
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 362, 793
Tru1I TTAA 5 cut(s) 134, 348, 549, 662, 857
Tru9I TTAA 5 cut(s) 134, 348, 549, 662, 857
TscAI CASTG 2 cut(s) 84, 112
TseFI GTSAC 2 cut(s) 103, 573
TseI GCWGC 4 cut(s) 17, 47, 70, 163
Tsp45I GTSAC 2 cut(s) 103, 573
TspDTI ATGAA 6 cut(s) 158, 278, 443, 600, 630, 735
TspRI CASTG 2 cut(s) 84, 112
VpaK11BI GGWCC 1 cut(s) 871
XapI RAATTY 5 cut(s) 350, 416, 587, 722, 839
XceI RCATGY 2 cut(s) 491, 769
XspI CTAG 3 cut(s) 101, 527, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.