Rh5CG072600

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000650
Physical Location & Seq
Forward (+)
5423808 .. 5425245
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG072600.1

Sequence Viewer

Length: 1089 bp
ATGCCTTTGGAACTTGCAGCAGGATCCGATGATGTAGCAGTTGATGCAGCTTCAGAGAATGCGAAGCGGCAGCCTGCACTGCCTTTGGAACTCATTGCTCTAGTCACTGTCAAAAGGAAAAGTGAAAATAAGTTAAATACTATGAAAGACATGATGCTTAGGCTGCTTGGCAATTATGCTTCACCTAATGGCCAGGGTGATCATCATAATCACAAGGGTGTTGTCCTACAGCTTGTTAGTACACAAATCCACACAAAGGAAATGAAGCCAAAGCTGAGTGAGGAAGCAATATTACATTGGACAGAGACTTTGAAAATGGGTGCTGGGAAGTGCATTACTTACCAAGTTAAATTTGTGGTGGATTCAAACTTTGGGATGCCAGGAGCCATCACAGTCAGCAACAGATACAACAGCGAATTTTATTTAGATAGTATCAACATCGAAGGTGTTGTTCATTTTGCCTGCAACTCTTGGGTTCAATCAGAGCATGCTAACCCTGCAAAAAGAGTCTTCTTTTCTACCAAGCCATACTTACCTAGTGAGACACCAGCAGGGGTTAAAGAGCTGAGAGAAATGGAGCTAATTCAACTAAGGGGTGATGGGACAGGACTTCGAAAGCCATCTGATAGAATATACGACTACGATACTTACAGCAACATTGGAAATCCAAACAAGGGAATTGAATACATTAGACCCATTCTTGGAGGCAGTAATCACCCATACCCTAGACACTGTCGAACTGGAGGTCCTCCAACCAAGACAGATGAGAAACTGGAGTCACCAGTAAATGAATTCTCGACACTTTATGTGCCTAGAGATGAAGAGTTTGAAGAGTCCAAGAGAGAAGCTTTTGATCTTGGAAGGTTAAAGGCAATTATGAGGCACATTATTCCTGCACTAACAAAAGTTGCCAGGGATAGTGATGAATTCAAGGCATATTCAGACATAACTGGTCTGTATAGAGACGGCATGCCTTCAATAACAAAGAATATGAGGAATCTTCCCTTGCCAAATATTTTGAACAAAGTCCAGGAATACCTAAAATTTGACCCAACAAAATTAAACTTAAGTAAGGACCGTCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

362

Amino Acids

40.78

Weight (kDa)

8.22

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 93 - 172 5.5e-08 PLAT/LH2 domain
Lipoxygenase PF00305 186 - 342 5.3e-45 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 18, 31
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 5 cut(s) 350, 416, 791, 926, 1043
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 3 cut(s) 256, 674, 701
AflII CTTAAG 1 cut(s) 1066
AgsI TTSAA 9 cut(s) 313, 366, 479, 587, 683, 830, 931, 978, 1021
AjnI CCWGG 4 cut(s) 192, 379, 911, 1029
AleI CACNNNNGTG 1 cut(s) 216
AloI GAACNNNNNNTCC 2 cut(s) 730, 762
AluBI AGCT 6 cut(s) 50, 232, 274, 565, 580, 848
AluI AGCT 6 cut(s) 50, 232, 274, 565, 580, 848
Alw26I GTCTC 3 cut(s) 299, 536, 957
AlwI GGATC 2 cut(s) 18, 31
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 4 cut(s) 17, 47, 70, 163
ApoI RAATTY 5 cut(s) 350, 416, 791, 926, 1043
ArsI GACNNNNNNTTYG 4 cut(s) 292, 324, 730, 762
AspS9I GGNCC 2 cut(s) 746, 1075
AsuHPI GGTGA 5 cut(s) 174, 209, 608, 707, 771
AsuII TTCGAA 1 cut(s) 613
AvaII GGWCC 2 cut(s) 746, 1075
BalI TGGCCA 1 cut(s) 192
BamHI GGATCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 276, 308
BbsI GAAGAC 1 cut(s) 502
BbvI GCAGC 4 cut(s) 29, 59, 82, 150
BccI CCATC 3 cut(s) 395, 593, 628
BceAI ACGGC 1 cut(s) 982
BciT130I CCWGG 4 cut(s) 194, 381, 913, 1031
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 299, 536, 957
BfaI CTAG 4 cut(s) 101, 537, 726, 813
BfmI CTRYAG 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 1066
BisI GCNGC 5 cut(s) 18, 48, 68, 71, 164
BlsI GCNGC 5 cut(s) 19, 49, 69, 72, 165
Bme1390I CCNGG 4 cut(s) 194, 381, 913, 1031
Bme18I GGWCC 2 cut(s) 746, 1075
BmgT120I GGNCC 2 cut(s) 746, 1075
BmiI GGNNCC 2 cut(s) 25, 385
BmrFI CCNGG 4 cut(s) 194, 381, 913, 1031
BmsI GCATC 3 cut(s) 34, 144, 366
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 2 cut(s) 762, 794
Bpu10I CCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 193, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 674, 701
Bse1I ACTGG 4 cut(s) 745, 777, 782, 955
Bse3DI GCAATG 1 cut(s) 93
BseBI CCWGG 4 cut(s) 194, 381, 913, 1031
BseDI CCNNGG 2 cut(s) 193, 912
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 3 cut(s) 256, 674, 701
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 266, 557
BseNI ACTGG 4 cut(s) 745, 777, 782, 955
BseXI GCAGC 4 cut(s) 29, 59, 82, 150
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 2 cut(s) 60, 879
BshFI GGCC 1 cut(s) 192
BslFI GGGAC 1 cut(s) 616
BslI CCNNNNNNNGG 3 cut(s) 256, 674, 701
BsmAI GTCTC 3 cut(s) 299, 536, 957
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 613
Bsp143I GATC 3 cut(s) 23, 199, 853
BspACI CCGC 1 cut(s) 67
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 267, 558
BspLI GGNNCC 2 cut(s) 25, 385
BspPI GGATC 2 cut(s) 18, 31
BspT104I TTCGAA 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 1066
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 4 cut(s) 745, 777, 782, 955
BssECI CCNNGG 2 cut(s) 193, 912
BssMI GATC 3 cut(s) 23, 199, 853
Bst2UI CCWGG 4 cut(s) 194, 381, 913, 1031
Bst4CI ACNGT 4 cut(s) 109, 394, 734, 1079
Bst6I CTCTTC 2 cut(s) 816, 825
BstAFI CTTAAG 1 cut(s) 1066
BstAPI GCANNNNNTGC 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 4 cut(s) 75, 463, 489, 971
BstDEI CTNAG 4 cut(s) 158, 275, 566, 590
BstF5I GGATG 1 cut(s) 381
BstKTI GATC 3 cut(s) 26, 202, 856
BstMAI GTCTC 3 cut(s) 299, 536, 957
BstMBI GATC 3 cut(s) 23, 199, 853
BstMWI GCNNNNNNNGC 4 cut(s) 44, 79, 163, 497
BstNI CCWGG 4 cut(s) 194, 381, 913, 1031
BstNSI RCATGY 2 cut(s) 491, 973
BstSCI CCNGG 4 cut(s) 192, 379, 911, 1029
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 29, 59, 82, 150
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 381
BtsI GCAGTG 1 cut(s) 77
BtsIMutI CAGTG 3 cut(s) 77, 105, 730
Cac8I GCNNGC 4 cut(s) 75, 463, 489, 971
Cfr13I GGNCC 2 cut(s) 746, 1075
Csp6I GTAC 1 cut(s) 240
CviAII CATG 3 cut(s) 151, 488, 970
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 4 cut(s) 158, 275, 566, 590
DpnI GATC 3 cut(s) 25, 201, 855
DpnII GATC 3 cut(s) 23, 199, 853
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 816, 825
EarI CTCTTC 2 cut(s) 816, 825
Eco47I GGWCC 2 cut(s) 746, 1075
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 746
EcoRI GAATTC 2 cut(s) 791, 926
EcoRII CCWGG 4 cut(s) 192, 379, 911, 1029
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 3 cut(s) 154, 491, 973
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 1 cut(s) 616
FatI CATG 3 cut(s) 150, 487, 969
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FokI GGATG 1 cut(s) 388
Fsp4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FspBI CTAG 4 cut(s) 101, 537, 726, 813
GluI GCNGC 5 cut(s) 18, 48, 68, 71, 164
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 2 cut(s) 762, 794
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 3 cut(s) 154, 491, 973
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 5 cut(s) 362, 507, 776, 833, 997
HphI GGTGA 5 cut(s) 174, 209, 608, 707, 771
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 5 cut(s) 28, 55, 484, 625, 943
Hpy188III TCNNGA 1 cut(s) 796
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 437, 855, 984
HpyCH4III ACNGT 4 cut(s) 109, 394, 734, 1079
HpyCH4V TGCA 7 cut(s) 17, 47, 77, 333, 465, 500, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 79, 163, 497
HpyF3I CTNAG 4 cut(s) 158, 275, 566, 590
Hsp92II CATG 3 cut(s) 154, 491, 973
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 23, 199, 853
LmnI GCTCC 2 cut(s) 383, 577
Lsp1109I GCAGC 4 cut(s) 29, 59, 82, 150
LweI GCATC 3 cut(s) 34, 144, 366
MaeI CTAG 4 cut(s) 101, 537, 726, 813
MaeIII GTNAC 2 cut(s) 103, 777
MalI GATC 3 cut(s) 25, 201, 855
MboI GATC 3 cut(s) 23, 199, 853
MboII GAAGA 4 cut(s) 502, 833, 842, 992
MflI RGATCY 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 192
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 3 cut(s) 516, 785, 842
MmeI TCCRAC 1 cut(s) 776
MnlI CCTC 6 cut(s) 274, 698, 737, 759, 873, 987
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 6 cut(s) 134, 348, 558, 866, 1061, 1067
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 1066
MspR9I CCNGG 4 cut(s) 194, 381, 913, 1031
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 4 cut(s) 194, 381, 913, 1031
MwoI GCNNNNNNNGC 4 cut(s) 44, 79, 163, 497
NdeII GATC 3 cut(s) 23, 199, 853
NlaIII CATG 3 cut(s) 154, 491, 973
NlaIV GGNNCC 2 cut(s) 25, 385
NmuCI GTSAC 2 cut(s) 103, 777
NspI RCATGY 2 cut(s) 491, 973
NspV TTCGAA 1 cut(s) 613
OliI CACNNNNGTG 1 cut(s) 216
PaeI GCATGC 2 cut(s) 491, 973
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 362, 997
PflFI GACNNNGTC 1 cut(s) 732
PfoI TCCNGGA 1 cut(s) 1029
PkrI GCNGC 5 cut(s) 19, 49, 69, 72, 165
PleI GAGTC 3 cut(s) 515, 784, 841
PpsI GAGTC 3 cut(s) 515, 784, 841
PpuMI RGGWCCY 1 cut(s) 746
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 4 cut(s) 192, 379, 911, 1029
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 4 cut(s) 192, 379, 911, 1029
PspN4I GGNNCC 2 cut(s) 25, 385
PspPI GGNCC 2 cut(s) 746, 1075
PspPPI RGGWCCY 1 cut(s) 746
PsuI RGATCY 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 732
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 6 cut(s) 134, 348, 558, 866, 1061, 1067
SatI GCNGC 5 cut(s) 18, 48, 68, 71, 164
Sau3AI GATC 3 cut(s) 23, 199, 853
Sau96I GGNCC 2 cut(s) 746, 1075
SchI GAGTC 3 cut(s) 516, 785, 842
ScrFI CCNGG 4 cut(s) 194, 381, 913, 1031
SfaNI GCATC 3 cut(s) 34, 144, 366
SfcI CTRYAG 1 cut(s) 227
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 2 cut(s) 746, 1075
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 1066
SmoI CTYRAG 1 cut(s) 1066
SphI GCATGC 2 cut(s) 491, 973
SsiI CCGC 1 cut(s) 67
SspI AATATT 2 cut(s) 291, 1015
SspMI CTAG 4 cut(s) 101, 537, 726, 813
StyD4I CCNGG 4 cut(s) 192, 379, 911, 1029
TaaI ACNGT 4 cut(s) 109, 394, 734, 1079
TaqI TCGA 4 cut(s) 441, 613, 736, 797
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 362, 997
Tru1I TTAA 6 cut(s) 134, 348, 558, 866, 1061, 1067
Tru9I TTAA 6 cut(s) 134, 348, 558, 866, 1061, 1067
TscAI CASTG 3 cut(s) 84, 112, 737
TseFI GTSAC 2 cut(s) 103, 777
TseI GCWGC 4 cut(s) 17, 47, 70, 163
Tsp45I GTSAC 2 cut(s) 103, 777
TspDTI ATGAA 6 cut(s) 158, 278, 443, 804, 834, 939
TspRI CASTG 3 cut(s) 84, 112, 737
Tth111I GACNNNGTC 1 cut(s) 732
Vha464I CTTAAG 1 cut(s) 1066
VpaK11BI GGWCC 2 cut(s) 746, 1075
XapI RAATTY 5 cut(s) 350, 416, 791, 926, 1043
XceI RCATGY 2 cut(s) 491, 973
XspI CTAG 4 cut(s) 101, 537, 726, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.