pycom10g24590

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000650
Physical Location & Seq
Reverse (-)
26416075 .. 26416734
660 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g24590.1

Sequence Viewer

Length: 660 bp
ATGGAGACATTGGTTCGGACCTATGTCGATTACTACTATCCTGATGCAAGTGTGGTTCATTGTGATACAGAACTCCAGGCGTGGTACAACGAGTCAATCAATGTAGGCCATGGTGATCTTCACCATGCTAGCTGGTGGCCGAAACTCTCAACTCCAGATGATCTTATCTCCATCCTCACCACCATGATTTGGGTCTCATCAGCACAGCACGCAGCACTGAACTATGGGCAATATCCATATGGTGGGTATGTCCCGAACCGCCCACCACACATGCGGAGACTATTGCCGCAGGAGCATGATCCAGAGTATGCTGCTTTCATTAGGGATCCACAGAAATACTTTCTATCATCCCTGCCAGGTTTATTTGAAGCAACGAAGTACATGGCTATAATAGATATCCTTTCAACGCACTCACCGGATGAGGAATATATCGGGGGGAGAAAAGACTTGTCAACCTGGTCAGCTGACACGGTGATCACCGAGGCATTCTACAGATTTTCAATGGAGATGAAGCGGATTGAGAAAGAGATTGAACAAAGAAATGCCGACTTAAACCTTCGGAACAGATGCGGGGCTGGAGTATCACCATACCAGCTGCTCATGCCAAGCTCGGAACCAGGGGTTACGTGCAGAGGAGTGCCGAATAGTATATCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

220

Amino Acids

25.03

Weight (kDa)

5.31

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 2 - 202 7.5e-84 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 189, 242
AciI CCGC 5 cut(s) 259, 274, 287, 514, 570
AclWI GGATC 3 cut(s) 293, 320, 333
AcoI YGGCCR 1 cut(s) 137
AfaI GTAC 2 cut(s) 86, 380
AfiI CCNNNNNNNGG 2 cut(s) 189, 242
AgsI TTSAA 4 cut(s) 368, 405, 501, 533
AjnI CCWGG 4 cut(s) 75, 355, 455, 616
AluBI AGCT 4 cut(s) 132, 464, 595, 609
AluI AGCT 4 cut(s) 132, 464, 595, 609
Alw26I GTCTC 2 cut(s) 199, 271
AlwI GGATC 3 cut(s) 293, 320, 333
AoxI GGCC 2 cut(s) 106, 137
ApeKI GCWGC 3 cut(s) 212, 311, 595
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 7 cut(s) 113, 125, 169, 405, 469, 484, 576
AsuNHI GCTAGC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 18
BamHI GGATCC 1 cut(s) 325
BbvI GCAGC 3 cut(s) 224, 298, 582
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 4 cut(s) 77, 357, 457, 618
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 199, 271
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 490
BisI GCNGC 4 cut(s) 213, 287, 312, 596
BlsI GCNGC 4 cut(s) 214, 288, 313, 597
Bme1390I CCNGG 4 cut(s) 77, 357, 457, 618
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 327, 615
BmrFI CCNGG 4 cut(s) 77, 357, 457, 618
BmsI GCATC 2 cut(s) 34, 557
BmtI GCTAGC 1 cut(s) 132
BoxI GACNNNNGTC 1 cut(s) 23
BpmI CTGGAG 3 cut(s) 59, 138, 597
BsaAI YACGTR 1 cut(s) 627
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 109, 480, 617
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 242
BseBI CCWGG 4 cut(s) 77, 357, 457, 618
BseDI CCNNGG 3 cut(s) 109, 480, 617
BseGI GGATG 3 cut(s) 171, 347, 424
BseLI CCNNNNNNNGG 2 cut(s) 189, 242
BseRI GAGGAG 1 cut(s) 648
BseXI GCAGC 3 cut(s) 224, 298, 582
BsgI GTGCAG 1 cut(s) 649
BshFI GGCC 2 cut(s) 108, 139
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 189, 242
BsmAI GTCTC 2 cut(s) 199, 271
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 485
BsnI GGCC 2 cut(s) 108, 139
Bso31I GGTCTC 1 cut(s) 199
Bsp143I GATC 5 cut(s) 115, 160, 298, 325, 474
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 5 cut(s) 259, 274, 287, 514, 570
BspANI GGCC 2 cut(s) 108, 139
BspLI GGNNCC 2 cut(s) 327, 615
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 3 cut(s) 293, 320, 333
BspTNI GGTCTC 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 109, 480, 617
BssMI GATC 5 cut(s) 115, 160, 298, 325, 474
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 4 cut(s) 77, 357, 457, 618
Bst4CI ACNGT 1 cut(s) 472
BstBAI YACGTR 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 130, 210
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 171, 347, 424
BstKTI GATC 5 cut(s) 118, 163, 301, 328, 477
BstMAI GTCTC 2 cut(s) 199, 271
BstMBI GATC 5 cut(s) 115, 160, 298, 325, 474
BstMWI GCNNNNNNNGC 3 cut(s) 209, 292, 601
BstNI CCWGG 4 cut(s) 77, 357, 457, 618
BstNSI RCATGY 1 cut(s) 274
BstPAI GACNNNNGTC 1 cut(s) 23
BstSCI CCNGG 4 cut(s) 75, 355, 455, 616
BstSFI CTRYAG 1 cut(s) 490
BstV1I GCAGC 3 cut(s) 224, 298, 582
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 108, 139
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 3 cut(s) 171, 347, 424
BtsIMutI CAGTG 1 cut(s) 215
Cac8I GCNNGC 2 cut(s) 130, 210
Cfr13I GGNCC 1 cut(s) 18
CsiI ACCWGGT 1 cut(s) 455
Csp6I GTAC 2 cut(s) 85, 379
CviAII CATG 7 cut(s) 110, 125, 184, 271, 296, 382, 601
CviJI RGCY 8 cut(s) 108, 132, 139, 386, 464, 575, 595, 609
CviKI_1 RGCY 8 cut(s) 108, 132, 139, 386, 464, 575, 595, 609
CviQI GTAC 2 cut(s) 85, 379
DpnI GATC 5 cut(s) 117, 162, 300, 327, 476
DpnII GATC 5 cut(s) 115, 160, 298, 325, 474
EaeI YGGCCR 1 cut(s) 137
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 199
Eco32I GATATC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 18
EcoRII CCWGG 4 cut(s) 75, 355, 455, 616
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 7 cut(s) 113, 128, 187, 274, 299, 385, 604
FaqI GGGAC 1 cut(s) 236
FatI CATG 7 cut(s) 109, 124, 183, 270, 295, 381, 600
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 474
Fnu4HI GCNGC 4 cut(s) 213, 287, 312, 596
FokI GGATG 3 cut(s) 158, 334, 431
Fsp4HI GCNGC 4 cut(s) 213, 287, 312, 596
FspBI CTAG 1 cut(s) 129
GluI GCNGC 4 cut(s) 213, 287, 312, 596
GsuI CTGGAG 3 cut(s) 59, 138, 597
HaeIII GGCC 2 cut(s) 108, 139
HapII CCGG 1 cut(s) 416
Hin1II CATG 7 cut(s) 113, 128, 187, 274, 299, 385, 604
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 1 cut(s) 92
HpaII CCGG 1 cut(s) 416
HphI GGTGA 7 cut(s) 113, 125, 169, 405, 469, 484, 576
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 4 cut(s) 18, 561, 613, 659
Hpy188III TCNNGA 4 cut(s) 41, 155, 253, 302
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 2 cut(s) 47, 630
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 292, 601
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 7 cut(s) 113, 128, 187, 274, 299, 385, 604
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 5 cut(s) 115, 160, 298, 325, 474
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 3 cut(s) 224, 298, 582
LweI GCATC 2 cut(s) 34, 557
MabI ACCWGGT 1 cut(s) 455
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 1 cut(s) 622
MalI GATC 5 cut(s) 117, 162, 300, 327, 476
MboI GATC 5 cut(s) 115, 160, 298, 325, 474
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 325
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 4 cut(s) 185, 415, 475, 626
MseI TTAA 1 cut(s) 551
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 2 cut(s) 464, 595
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 4 cut(s) 77, 357, 457, 618
Mva1269I GAATGC 1 cut(s) 485
MvaI CCWGG 4 cut(s) 77, 357, 457, 618
MwoI GCNNNNNNNGC 3 cut(s) 209, 292, 601
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 238
NdeII GATC 5 cut(s) 115, 160, 298, 325, 474
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 7 cut(s) 113, 128, 187, 274, 299, 385, 604
NlaIV GGNNCC 2 cut(s) 327, 615
NspI RCATGY 1 cut(s) 274
PctI GAATGC 1 cut(s) 485
PflMI CCANNNNNTGG 2 cut(s) 189, 242
PkrI GCNGC 4 cut(s) 214, 288, 313, 597
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 627
PshAI GACNNNNGTC 1 cut(s) 23
Psp6I CCWGG 4 cut(s) 75, 355, 455, 616
PspGI CCWGG 4 cut(s) 75, 355, 455, 616
PspN4I GGNNCC 2 cut(s) 327, 615
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 325
PvuII CAGCTG 2 cut(s) 464, 595
RsaI GTAC 2 cut(s) 86, 380
RsaNI GTAC 2 cut(s) 85, 379
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 551
SatI GCNGC 4 cut(s) 213, 287, 312, 596
Sau3AI GATC 5 cut(s) 115, 160, 298, 325, 474
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 4 cut(s) 77, 357, 457, 618
SetI ASST 9 cut(s) 23, 134, 361, 458, 466, 558, 597, 611, 629
SexAI ACCWGGT 1 cut(s) 455
SfaNI GCATC 2 cut(s) 34, 557
SfcI CTRYAG 1 cut(s) 490
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 182
SsiI CCGC 5 cut(s) 259, 274, 287, 514, 570
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 4 cut(s) 75, 355, 455, 616
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 629
TaqI TCGA 1 cut(s) 27
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 289
Tru1I TTAA 1 cut(s) 551
Tru9I TTAA 1 cut(s) 551
TscAI CASTG 1 cut(s) 222
TseI GCWGC 3 cut(s) 212, 311, 595
TspDTI ATGAA 3 cut(s) 47, 307, 524
TspRI CASTG 1 cut(s) 222
Van91I CCANNNNNTGG 2 cut(s) 189, 242
VpaK11BI GGWCC 1 cut(s) 18
XceI RCATGY 1 cut(s) 274
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.