Rh3BG203600

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000650
Physical Location & Seq
Forward (+)
18187047 .. 18190947
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG203600.1

Sequence Viewer

Length: 2736 bp
ATGAGAGTTATGGCATCTATTATGGGCGTAACTCTGGTAGCTCATGATTTCAATCCCCTTTGTTCAAAACCAAGAGCCTTAAGCATCCAAAAACTTCCTTCTCCTGCCAGTTTGTTTTCTTCGACGACCAAGACAAGGAGAGTCGAGTTACAATGGAAGAAGAAGAAGATGGCAAACGTAGCGGTAGTGAATCTTAATACAACAACCAATGGTGCTCTTGATCATGTGGACATGGTAACATCCTCTCTTGCTCTTACCGCAGAGAAGCCTGCAGTGACTTTCGAACTCATTGCCATAATCACTGTAAAGAATATTCATCAGAAGGTAAATATCAATGTCGACACAATGCTTCATTGGTTCGGCGACAGAAGACACGATGATTACAAGGGTGGGGTACTTCTACAGCTTGTTAGTACTCAAACTGCCCCAAAGGGAGTGAAGCCGAAACTAAGCCAGGAAGCTGTATTGGATTGGACAAAGAATCCGAAAATGGGTGATGAGAAGAACAGTTACCAGGTCAAGTTTGTGGTGGACTCAACATTTGGGATGCCAGGAGCCATTACAGTGAGTAACAGATATGATGATGAATTCTATTTAGATAGCATTAACATTGAAGGTCTAGTTCACTTTGCCTGCAACTCTTGGGTCCAACCAGATCAGAAGTCTAACGCGCCAAAAAGAATCTTCTTCTCTACTAGGGCATACTTACCCAATGAGACACCAGCTGGGCTGAAAGAGCTAAGAGAAATAGAGCTGATTCAACTGAGGGGCGATGGGACTGGGCTTAGAGTGCAATCTGATAGAATATACGACTACGACAGTTACAATGACATTGGAAATCCAGATAAGGGAATTGAGTACATGAGACCTACCCTTGGAGGCAATGTTCACCCACACCCTAGACGCTGTCGAACTGGACGCCCTCCAACCAAGACAGATGAGAATATGGAGTCACCGGTGAGCGAATTCGAGACAATCTATGTGCCTAGAGATGAAGAGTTTGAGCAGCCCAAACAAGAAGCTCTAAATGTCGGAAAGTTGAAAGGAACTGTCCGCAATATAACTCATGCACTTTCAACAATTACTGCAGATAGAAATGTCAAGGGGTATTCGGACATCAATGGTCTGTATACAGATTCTTCTTCTCTTCAATCCAAGACCCGGCCGGGAACTCAAATTTTGAACAAAGTCCACGAATTCCTCAAATTTGACCCCCCAAAATTAAAATCAAGGGAGATATATTGTCTGCCAGATGACCAATTTGGGCGCCAAACCATTGCAGGCATAAACCCTTTAAGCATAGAAAGGCTCGAGGTTTTCCCACCTGTAAGCAAACTAGATACCTCCATTTATGGTCCTCAAGAATCAGCACTCAAGGAAGAGCATATAATAGGCCAACTAAATGGCATGTCCATACAACAGGCATTGGAAGAAAACAAGCTTTTCATACTAGACTACCATGACATTTTTCTTCCATTTCTCAACAAAATAAACGCTCTAGATGACCGGAAAGCTTATGGAACACGAACAATTTTTTTCCTGACATCATTAGGAACTTTGAAGCCCATTGCTATTGAGCTCAGTCTTTCAGATTCAGCATCCAAGCAGGTTCTCACTCCTCCAATTGATGCTACGACAAGTTGGCTTTGGCAGCTTGGCAAGGCTCATGTATGCTCCAATGATGCCAGTGTTCATCAACTCGTTCATCACTGGTTACGCACCCACGCTTGCATAGAACCGACTACAATAGCAACTCATAGACAACTGAGTGTTATGCATCCTATCTGCAAGCTTCTCAAACCTCACTTGCGCTACACCTTGAAGGTAAATGCTATGGCCCGTAAGGATCTCATCAACGCCGGAGGGACAGTCGAGTCCAATTTTACTGCTGCTAAATACTGCATGGAGTTCAGTTGTGCTGCTTATCGAGATTGGTGGCGCTTTGACCTTGAAGGTCTTCCTGCAGATCTCATTAGAAGAGGAATAGCTGTACCAGACACAAGTCAAGTGCATGGGCTAAAACTACTCATTCAAGACTACCCTTATGCAACAGACGGGCTCCTCATATGGTCAGCAATTGAGACATTGGTTCAAACCTATGTTAATTACTACTACCCTAATGCAAGTTTGGTCACTTCAGATACTGAACTCCAATCCTGGTACAATGAATTTATCAATTTGGGACATGCTGATCTTCGCAACGCTAGCTGGTGGCCAAAACTCTCTACTCCGGTGGATCTCATCTCCATTCTCACCACCATCATTTGGCTCACATCAGCTCAACACGCTGCCCTAAACTTCGGGCAATACCCTTATGGTGGCTATGTCCCAACCCGCCCACCACACATGAGGAGACTAATTCCAAAAAGCAATGACCCGGAGTATGCTTCTTTCATTAGGGATCCTCAGCAGTACTTCATATACTCATTGCCGAGTTTATTTGAAGCAACGAAGTACATGGCTGTAATTGATATAATCTCGGCACATTCACCGGATGAAGAGTACATTGGGGAGAGAAAAGACTTGTCAAACTGGTCAGCTGACACTGAGATTAGTGAGGCATTTTACAGATTTGCAGTGGAGATGAGGAGGATTGAGAAAGAGATTGCACGAAGAAACGGGGATTTAAGTCTCCGGAATAGATGTGGGGCTGGGGTTTCACCATACGAGCTTCTCATGCCTAGTTCAGAACCTGGGGTTACTTGCAGAGGTGTTCCAAATAGTATAACAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

911

Amino Acids

102.81

Weight (kDa)

6.95

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 147 - 230 2.1e-06 PLAT/LH2 domain
Lipoxygenase PF00305 243 - 894 7.4e-279 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1873
Acc36I ACCTGC 1 cut(s) 1597
AccB1I GGYRCC 1 cut(s) 1266
AccB7I CCANNNNNTGG 1 cut(s) 2265
AccI GTMKAC 2 cut(s) 339, 1130
AccII CGCG 1 cut(s) 671
AccIII TCCGGA 1 cut(s) 2634
AciI CCGC 4 cut(s) 182, 258, 1054, 2335
AclWI GGATC 4 cut(s) 1854, 2244, 2396, 2409
AcoI YGGCCR 2 cut(s) 1163, 2213
AcsI RAATTY 6 cut(s) 587, 965, 1176, 1196, 1205, 2168
AcuI CTGAAG 1 cut(s) 2121
AcyI GRCGYC 2 cut(s) 919, 1267
AfaI GTAC 8 cut(s) 396, 415, 860, 1992, 2162, 2414, 2456, 2504
AfiI CCNNNNNNNGG 7 cut(s) 135, 491, 848, 875, 1161, 2265, 2318
AflII CTTAAG 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 955
AjnI CCWGG 5 cut(s) 453, 513, 550, 2156, 2692
AjuI GAANNNNNNNTTGG 2 cut(s) 2490, 2522
AloI GAACNNNNNNTCC 2 cut(s) 870, 902
Alw21I GWGCWC 2 cut(s) 217, 1581
Alw26I GTCTC 6 cut(s) 710, 859, 965, 2075, 2347, 2636
AlwI GGATC 4 cut(s) 1854, 2244, 2396, 2409
AlwNI CAGNNNCTG 2 cut(s) 2144, 2693
Ama87I CYCGRG 1 cut(s) 1310
Aor13HI TCCGGA 1 cut(s) 2634
AoxI GGCC 4 cut(s) 1163, 1393, 1836, 2213
ApeKI GCWGC 5 cut(s) 1006, 1651, 1889, 1919, 2288
ApoI RAATTY 6 cut(s) 587, 965, 1176, 1196, 1205, 2168
ArsI GACNNNNNNTTYG 2 cut(s) 524, 556
AsiGI ACCGGT 1 cut(s) 955
Asp700I GAANNNNTTC 1 cut(s) 1956
AspLEI GCGC 4 cut(s) 673, 1269, 1812, 1941
AspS9I GGNCC 3 cut(s) 646, 1355, 1837
AsuC2I CCSGG 3 cut(s) 1162, 1167, 2378
AsuHPI GGTGA 7 cut(s) 506, 881, 945, 970, 2245, 2481, 2652
AsuII TTCGAA 1 cut(s) 282
AsuNHI GCTAGC 1 cut(s) 2204
AvaI CYCGRG 1 cut(s) 1310
AvaII GGWCC 2 cut(s) 646, 1355
BalI TGGCCA 1 cut(s) 2215
BamHI GGATCC 1 cut(s) 2401
BanI GGYRCC 1 cut(s) 1266
BanII GRGCYC 2 cut(s) 1581, 2061
BarI GAAGNNNNNNTAC 2 cut(s) 494, 526
BbsI GAAGAC 2 cut(s) 376, 1949
Bbv12I GWGCWC 2 cut(s) 217, 1581
BbvCI CCTCAGC 1 cut(s) 2406
BbvI GCAGC 5 cut(s) 1018, 1663, 1876, 1906, 2275
BccI CCATC 3 cut(s) 163, 767, 2267
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 5 cut(s) 455, 515, 552, 2158, 2694
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 3 cut(s) 1162, 1167, 2378
BcoDI GTCTC 6 cut(s) 710, 859, 965, 2075, 2347, 2636
BfaI CTAG 9 cut(s) 620, 696, 900, 987, 1337, 1451, 1499, 2205, 2682
BfmI CTRYAG 4 cut(s) 270, 401, 1086, 1962
BfoI RGCGCY 2 cut(s) 1270, 1942
BfrI CTTAAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 1597
BglII AGATCT 1 cut(s) 1966
BisI GCNGC 5 cut(s) 1007, 1652, 1890, 1920, 2289
BlsI GCNGC 5 cut(s) 1008, 1653, 1891, 1921, 2290
BmcAI AGTACT 2 cut(s) 415, 2414
Bme1390I CCNGG 8 cut(s) 455, 515, 552, 1162, 1167, 2158, 2378, 2694
Bme18I GGWCC 2 cut(s) 646, 1355
BmeT110I CYCGRG 1 cut(s) 1310
BmgT120I GGNCC 3 cut(s) 646, 1355, 1837
BmiI GGNNCC 5 cut(s) 556, 647, 1268, 2060, 2403
BmrFI CCNGG 8 cut(s) 455, 515, 552, 1162, 1167, 2158, 2378, 2694
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 7 cut(s) 23, 93, 537, 1607, 1618, 1672, 1786
BmtI GCTAGC 1 cut(s) 2208
BmuI ACTGGG 1 cut(s) 789
BoxI GACNNNNGTC 1 cut(s) 2001
BpiI GAAGAC 2 cut(s) 376, 1949
Bpu10I CCTNAGC 1 cut(s) 2406
Bpu14I TTCGAA 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 1344, 1358
BpuMI CCSGG 3 cut(s) 1162, 1167, 2378
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 2 cut(s) 919, 1267
BsaI GGTCTC 1 cut(s) 859
BsaJI CCNNGG 2 cut(s) 874, 2693
BsaWI WCCGGW 5 cut(s) 955, 1506, 2230, 2491, 2634
BsaXI ACNNNNNCTCC 4 cut(s) 870, 900, 1854, 1884
Bsc4I CCNNNNNNNGG 7 cut(s) 135, 491, 848, 875, 1161, 2265, 2318
Bse118I RCCGGY 1 cut(s) 955
Bse1I ACTGG 6 cut(s) 108, 784, 919, 1686, 1715, 2537
Bse3DI GCAATG 6 cut(s) 288, 889, 1275, 1566, 2377, 2426
Bse8I GATNNNNATC 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 2634
BseBI CCWGG 5 cut(s) 455, 515, 552, 2158, 2694
BseDI CCNNGG 2 cut(s) 874, 2693
BseGI GGATG 6 cut(s) 84, 239, 552, 1598, 1777, 2500
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 7 cut(s) 135, 491, 848, 875, 1161, 2265, 2318
BseMI GCAATG 6 cut(s) 288, 889, 1275, 1566, 2377, 2426
BseMII CTCAG 5 cut(s) 755, 1594, 1757, 2420, 2538
BseNI ACTGG 6 cut(s) 108, 784, 919, 1686, 1715, 2537
BseRI GAGGAG 4 cut(s) 1608, 2051, 2365, 2602
BseX3I CGGCCG 1 cut(s) 1163
BseXI GCAGC 5 cut(s) 1018, 1663, 1876, 1906, 2275
BseYI CCCAGC 2 cut(s) 725, 2651
Bsh1236I CGCG 1 cut(s) 671
Bsh1285I CGRYCG 1 cut(s) 1166
BshFI GGCC 4 cut(s) 1165, 1395, 1838, 2215
BshNI GGYRCC 1 cut(s) 1266
BshTI ACCGGT 1 cut(s) 955
BsiEI CGRYCG 1 cut(s) 1166
BsiHKAI GWGCWC 2 cut(s) 217, 1581
BsiHKCI CYCGRG 1 cut(s) 1310
BsiSI CCGG 9 cut(s) 956, 1162, 1166, 1507, 1860, 2231, 2378, 2492, 2635
BslFI GGGAC 4 cut(s) 790, 1879, 2196, 2312
BslI CCNNNNNNNGG 7 cut(s) 135, 491, 848, 875, 1161, 2265, 2318
BsmAI GTCTC 6 cut(s) 710, 859, 965, 2075, 2347, 2636
BsmFI GGGAC 4 cut(s) 790, 1879, 2196, 2312
BsnI GGCC 4 cut(s) 1165, 1395, 1838, 2215
Bso31I GGTCTC 1 cut(s) 859
BsoBI CYCGRG 1 cut(s) 1310
Bsp119I TTCGAA 1 cut(s) 282
Bsp1286I GDGCHC 3 cut(s) 217, 1581, 2061
Bsp13I TCCGGA 1 cut(s) 2634
Bsp143I GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
BspACI CCGC 4 cut(s) 182, 258, 1054, 2335
BspANI GGCC 4 cut(s) 1165, 1395, 1838, 2215
BspCNI CTCAG 5 cut(s) 756, 1593, 1758, 2419, 2539
BspEI TCCGGA 1 cut(s) 2634
BspFNI CGCG 1 cut(s) 671
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 5 cut(s) 556, 647, 1268, 2060, 2403
BspMAI CTGCAG 3 cut(s) 274, 1090, 1966
BspMI ACCTGC 1 cut(s) 1597
BspOI GCTAGC 1 cut(s) 2208
BspPI GGATC 4 cut(s) 1854, 2244, 2396, 2409
BspQI GCTCTTC 1 cut(s) 1374
BspT104I TTCGAA 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 1266
BspTI CTTAAG 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 859
BsrDI GCAATG 6 cut(s) 288, 889, 1275, 1566, 2377, 2426
BsrFI RCCGGY 1 cut(s) 955
BsrI ACTGG 6 cut(s) 108, 784, 919, 1686, 1715, 2537
BssAI RCCGGY 1 cut(s) 955
BssECI CCNNGG 2 cut(s) 874, 2693
BssMI GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
BssNAI GTATAC 1 cut(s) 1131
BssNI GRCGYC 2 cut(s) 919, 1267
BssT1I CCWWGG 1 cut(s) 874
Bst1107I GTATAC 1 cut(s) 1131
Bst2UI CCWGG 5 cut(s) 455, 515, 552, 2158, 2694
Bst4CI ACNGT 7 cut(s) 304, 509, 565, 821, 1051, 1870, 2731
Bst6I CTCTTC 5 cut(s) 990, 1152, 1374, 1972, 2493
BstACI GRCGYC 2 cut(s) 919, 1267
BstAFI CTTAAG 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 282
BstC8I GCNNGC 6 cut(s) 270, 634, 1282, 1729, 1790, 2206
BstDEI CTNAG 8 cut(s) 449, 740, 764, 785, 1580, 1766, 2406, 2547
BstF5I GGATG 6 cut(s) 84, 239, 552, 1598, 1777, 2500
BstFNI CGCG 1 cut(s) 671
BstH2I RGCGCY 2 cut(s) 1270, 1942
BstHHI GCGC 4 cut(s) 673, 1269, 1812, 1941
BstKTI GATC 7 cut(s) 223, 658, 1849, 1969, 2194, 2239, 2404
BstMAI GTCTC 6 cut(s) 710, 859, 965, 2075, 2347, 2636
BstMBI GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
BstMCI CGRYCG 1 cut(s) 1166
BstMWI GCNNNNNNNGC 8 cut(s) 179, 257, 736, 790, 1651, 2205, 2285, 2677
BstNI CCWGG 5 cut(s) 455, 515, 552, 2158, 2694
BstNSI RCATGY 2 cut(s) 1411, 2189
BstPAI GACNNNNGTC 1 cut(s) 2001
BstSCI CCNGG 8 cut(s) 453, 513, 550, 1160, 1165, 2156, 2376, 2692
BstSFI CTRYAG 4 cut(s) 270, 401, 1086, 1962
BstUI CGCG 1 cut(s) 671
BstV1I GCAGC 5 cut(s) 1018, 1663, 1876, 1906, 2275
BstV2I GAAGAC 2 cut(s) 376, 1949
BstX2I RGATCY 4 cut(s) 1846, 1966, 2236, 2401
BstXI CCANNNNNNTGG 1 cut(s) 1403
BstYI RGATCY 4 cut(s) 1846, 1966, 2236, 2401
BstZ17I GTATAC 1 cut(s) 1131
BstZI CGGCCG 1 cut(s) 1163
BsuRI GGCC 4 cut(s) 1165, 1395, 1838, 2215
BtgZI GCGATG 1 cut(s) 786
BtsCI GGATG 6 cut(s) 84, 239, 552, 1598, 1777, 2500
BtsI GCAGTG 2 cut(s) 279, 2583
BtsIMutI CAGTG 7 cut(s) 279, 300, 570, 1693, 1708, 2544, 2583
BveI ACCTGC 1 cut(s) 1597
Cac8I GCNNGC 6 cut(s) 270, 634, 1282, 1729, 1790, 2206
CaiI CAGNNNCTG 2 cut(s) 2144, 2693
CciI TCATGA 1 cut(s) 43
CfoI GCGC 4 cut(s) 673, 1269, 1812, 1941
Cfr10I RCCGGY 1 cut(s) 955
Cfr13I GGNCC 3 cut(s) 646, 1355, 1837
CseI GACGC 2 cut(s) 912, 927
CsiI ACCWGGT 1 cut(s) 513
Csp6I GTAC 8 cut(s) 395, 414, 859, 1991, 2161, 2413, 2455, 2503
CspAI ACCGGT 1 cut(s) 955
CviQI GTAC 8 cut(s) 395, 414, 859, 1991, 2161, 2413, 2455, 2503
DdeI CTNAG 8 cut(s) 449, 740, 764, 785, 1580, 1766, 2406, 2547
DinI GGCGCC 1 cut(s) 1268
DpnI GATC 7 cut(s) 222, 657, 1848, 1968, 2193, 2238, 2403
DpnII GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
DrdI GACNNNNNNGTC 1 cut(s) 1873
DseDI GACNNNNNNGTC 1 cut(s) 1873
EaeI YGGCCR 2 cut(s) 1163, 2213
EagI CGGCCG 1 cut(s) 1163
Eam1104I CTCTTC 5 cut(s) 990, 1152, 1374, 1972, 2493
EarI CTCTTC 5 cut(s) 990, 1152, 1374, 1972, 2493
Ecl136II GAGCTC 1 cut(s) 1579
EclXI CGGCCG 1 cut(s) 1163
Eco130I CCWWGG 1 cut(s) 874
Eco24I GRGCYC 2 cut(s) 1581, 2061
Eco31I GGTCTC 1 cut(s) 859
Eco47I GGWCC 2 cut(s) 646, 1355
Eco52I CGGCCG 1 cut(s) 1163
Eco53kI GAGCTC 1 cut(s) 1579
Eco57I CTGAAG 1 cut(s) 2121
Eco88I CYCGRG 1 cut(s) 1310
EcoICRI GAGCTC 1 cut(s) 1579
EcoRI GAATTC 3 cut(s) 587, 965, 1196
EcoRII CCWGG 5 cut(s) 453, 513, 550, 2156, 2692
EcoT14I CCWWGG 1 cut(s) 874
EcoT22I ATGCAT 1 cut(s) 1779
EcoT38I GRGCYC 2 cut(s) 1581, 2061
EgeI GGCGCC 1 cut(s) 1268
EheI GGCGCC 1 cut(s) 1268
ErhI CCWWGG 1 cut(s) 874
FaqI GGGAC 4 cut(s) 790, 1879, 2196, 2312
FauI CCCGC 1 cut(s) 2342
FauNDI CATATG 1 cut(s) 2066
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 2 cut(s) 339, 1130
Fnu4HI GCNGC 5 cut(s) 1007, 1652, 1890, 1920, 2289
FokI GGATG 6 cut(s) 71, 226, 559, 1585, 1764, 2507
FriOI GRGCYC 2 cut(s) 1581, 2061
Fsp4HI GCNGC 5 cut(s) 1007, 1652, 1890, 1920, 2289
FspBI CTAG 9 cut(s) 620, 696, 900, 987, 1337, 1451, 1499, 2205, 2682
GlaI GCGC 4 cut(s) 672, 1268, 1811, 1940
GluI GCNGC 5 cut(s) 1007, 1652, 1890, 1920, 2289
GsaI CCCAGC 2 cut(s) 729, 2655
HaeII RGCGCY 2 cut(s) 1270, 1942
HaeIII GGCC 4 cut(s) 1165, 1395, 1838, 2215
HapII CCGG 9 cut(s) 956, 1162, 1166, 1507, 1860, 2231, 2378, 2492, 2635
HgaI GACGC 2 cut(s) 912, 927
HhaI GCGC 4 cut(s) 673, 1269, 1812, 1941
Hin1I GRCGYC 2 cut(s) 919, 1267
Hin6I GCGC 4 cut(s) 671, 1267, 1810, 1939
HinP1I GCGC 4 cut(s) 671, 1267, 1810, 1939
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 3 cut(s) 1439, 1512, 1790
HpaII CCGG 9 cut(s) 956, 1162, 1166, 1507, 1860, 2231, 2378, 2492, 2635
HphI GGTGA 7 cut(s) 506, 881, 945, 970, 2245, 2481, 2652
Hpy166II GTNNAC 7 cut(s) 229, 340, 532, 625, 889, 1131, 1192
Hpy188I TCNGA 9 cut(s) 321, 486, 660, 799, 1034, 1114, 1591, 2140, 2689
Hpy8I GTNNAC 7 cut(s) 229, 340, 532, 625, 889, 1131, 1192
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 5 cut(s) 108, 316, 608, 1816, 1946
HpyCH4III ACNGT 7 cut(s) 304, 509, 565, 821, 1051, 1870, 2731
HpyCH4IV ACGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 8 cut(s) 179, 257, 736, 790, 1651, 2205, 2285, 2677
HpyF3I CTNAG 8 cut(s) 449, 740, 764, 785, 1580, 1766, 2406, 2547
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 2 cut(s) 919, 1267
HspAI GCGC 4 cut(s) 671, 1267, 1810, 1939
KasI GGCGCC 1 cut(s) 1266
Kpn2I TCCGGA 1 cut(s) 2634
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
LguI GCTCTTC 1 cut(s) 1374
LmnI GCTCC 3 cut(s) 554, 1679, 2064
Lsp1109I GCAGC 5 cut(s) 1018, 1663, 1876, 1906, 2275
LweI GCATC 7 cut(s) 23, 93, 537, 1607, 1618, 1672, 1786
MabI ACCWGGT 1 cut(s) 513
MaeI CTAG 9 cut(s) 620, 696, 900, 987, 1337, 1451, 1499, 2205, 2682
MaeII ACGT 1 cut(s) 177
MalI GATC 7 cut(s) 222, 657, 1848, 1968, 2193, 2238, 2403
MboI GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
MfeI CAATTG 2 cut(s) 1623, 2076
MflI RGATCY 4 cut(s) 1846, 1966, 2236, 2401
MhlI GDGCHC 3 cut(s) 217, 1581, 2061
MlsI TGGCCA 1 cut(s) 2215
MluNI TGGCCA 1 cut(s) 2215
Mly113I GGCGCC 1 cut(s) 1267
MlyI GAGTC 4 cut(s) 150, 527, 959, 1883
MmeI TCCRAC 3 cut(s) 673, 950, 1012
Mox20I TGGCCA 1 cut(s) 2215
Mph1103I ATGCAT 1 cut(s) 1779
MroI TCCGGA 1 cut(s) 2634
MroXI GAANNNNTTC 1 cut(s) 1956
MscI TGGCCA 1 cut(s) 2215
MseI TTAA 7 cut(s) 80, 195, 606, 1223, 1295, 2103, 2627
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 2215
MspA1I CMGCKG 2 cut(s) 725, 2540
MspCI CTTAAG 1 cut(s) 79
MspI CCGG 9 cut(s) 956, 1162, 1166, 1507, 1860, 2231, 2378, 2492, 2635
MspR9I CCNGG 8 cut(s) 455, 515, 552, 1162, 1167, 2158, 2378, 2694
MunI CAATTG 2 cut(s) 1623, 2076
MvaI CCWGG 5 cut(s) 455, 515, 552, 2158, 2694
MvnI CGCG 1 cut(s) 671
MwoI GCNNNNNNNGC 8 cut(s) 179, 257, 736, 790, 1651, 2205, 2285, 2677
NarI GGCGCC 1 cut(s) 1267
NciI CCSGG 3 cut(s) 1162, 1167, 2378
NdeI CATATG 1 cut(s) 2066
NdeII GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
NheI GCTAGC 1 cut(s) 2204
NlaIV GGNNCC 5 cut(s) 556, 647, 1268, 2060, 2403
NmeAIII GCCGAG 2 cut(s) 2457, 2459
NmuCI GTSAC 3 cut(s) 274, 951, 2131
NsiI ATGCAT 1 cut(s) 1779
NspI RCATGY 2 cut(s) 1411, 2189
NspV TTCGAA 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 1310
PagI TCATGA 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 1374
PdmI GAANNNNTTC 1 cut(s) 1956
PfeI GAWTC 7 cut(s) 190, 481, 681, 757, 1136, 1364, 1592
PflFI GACNNNGTC 1 cut(s) 906
PflMI CCANNNNNTGG 1 cut(s) 2265
PinAI ACCGGT 1 cut(s) 955
PkrI GCNGC 5 cut(s) 1008, 1653, 1891, 1921, 2290
PleI GAGTC 4 cut(s) 149, 527, 958, 1882
PluTI GGCGCC 1 cut(s) 1270
PpsI GAGTC 4 cut(s) 149, 527, 958, 1882
PshAI GACNNNNGTC 1 cut(s) 2001
Psp124BI GAGCTC 1 cut(s) 1581
Psp6I CCWGG 5 cut(s) 453, 513, 550, 2156, 2692
PspFI CCCAGC 2 cut(s) 725, 2651
PspGI CCWGG 5 cut(s) 453, 513, 550, 2156, 2692
PspN4I GGNNCC 5 cut(s) 556, 647, 1268, 2060, 2403
PspPI GGNCC 3 cut(s) 646, 1355, 1837
PspXI VCTCGAGB 1 cut(s) 1310
PstI CTGCAG 3 cut(s) 274, 1090, 1966
PstNI CAGNNNCTG 2 cut(s) 2144, 2693
PsuI RGATCY 4 cut(s) 1846, 1966, 2236, 2401
PsyI GACNNNGTC 1 cut(s) 906
PvuII CAGCTG 2 cut(s) 725, 2540
RsaI GTAC 8 cut(s) 396, 415, 860, 1992, 2162, 2414, 2456, 2504
RsaNI GTAC 8 cut(s) 395, 414, 859, 1991, 2161, 2413, 2455, 2503
RseI CAYNNNNRTG 1 cut(s) 563
SacI GAGCTC 1 cut(s) 1581
SalI GTCGAC 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 1374
SaqAI TTAA 7 cut(s) 80, 195, 606, 1223, 1295, 2103, 2627
SatI GCNGC 5 cut(s) 1007, 1652, 1890, 1920, 2289
Sau3AI GATC 7 cut(s) 220, 655, 1846, 1966, 2191, 2236, 2401
Sau96I GGNCC 3 cut(s) 646, 1355, 1837
ScaI AGTACT 2 cut(s) 415, 2414
SchI GAGTC 4 cut(s) 150, 527, 959, 1883
ScrFI CCNGG 8 cut(s) 455, 515, 552, 1162, 1167, 2158, 2378, 2694
SduI GDGCHC 3 cut(s) 217, 1581, 2061
SexAI ACCWGGT 1 cut(s) 513
SfaNI GCATC 7 cut(s) 23, 93, 537, 1607, 1618, 1672, 1786
SfcI CTRYAG 4 cut(s) 270, 401, 1086, 1962
SfoI GGCGCC 1 cut(s) 1268
Sfr274I CTCGAG 1 cut(s) 1310
SfuI TTCGAA 1 cut(s) 282
SgrAI CRCCGGYG 1 cut(s) 955
SinI GGWCC 2 cut(s) 646, 1355
SlaI CTCGAG 1 cut(s) 1310
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 4 cut(s) 79, 1310, 1359, 1373
SmoI CTYRAG 4 cut(s) 79, 1310, 1359, 1373
SsiI CCGC 4 cut(s) 182, 258, 1054, 2335
SspDI GGCGCC 1 cut(s) 1266
SspI AATATT 1 cut(s) 313
SspMI CTAG 9 cut(s) 620, 696, 900, 987, 1337, 1451, 1499, 2205, 2682
SstI GAGCTC 1 cut(s) 1581
StyD4I CCNGG 8 cut(s) 453, 513, 550, 1160, 1165, 2156, 2376, 2692
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 7 cut(s) 304, 509, 565, 821, 1051, 1870, 2731
TaiI ACGT 1 cut(s) 180
TaqI TCGA 9 cut(s) 122, 144, 282, 339, 910, 969, 1311, 1872, 1927
TatI WGTACW 5 cut(s) 413, 858, 2412, 2454, 2502
TfiI GAWTC 7 cut(s) 190, 481, 681, 757, 1136, 1364, 1592
Tru1I TTAA 7 cut(s) 80, 195, 606, 1223, 1295, 2103, 2627
Tru9I TTAA 7 cut(s) 80, 195, 606, 1223, 1295, 2103, 2627
TscAI CASTG 7 cut(s) 279, 307, 570, 1693, 1715, 2551, 2583
TseFI GTSAC 3 cut(s) 274, 951, 2131
TseI GCWGC 5 cut(s) 1006, 1651, 1889, 1919, 2288
Tsp45I GTSAC 3 cut(s) 274, 951, 2131
TspRI CASTG 7 cut(s) 279, 307, 570, 1693, 1715, 2551, 2583
Tth111I GACNNNGTC 1 cut(s) 906
Van91I CCANNNNNTGG 1 cut(s) 2265
Vha464I CTTAAG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 646, 1355
XapI RAATTY 6 cut(s) 587, 965, 1176, 1196, 1205, 2168
XbaI TCTAGA 1 cut(s) 1498
XceI RCATGY 2 cut(s) 1411, 2189
XhoI CTCGAG 1 cut(s) 1310
XmiI GTMKAC 2 cut(s) 339, 1130
XmnI GAANNNNTTC 1 cut(s) 1956
XspI CTAG 9 cut(s) 620, 696, 900, 987, 1337, 1451, 1499, 2205, 2682
ZrmI AGTACT 2 cut(s) 415, 2414
Zsp2I ATGCAT 1 cut(s) 1779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.