Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000650

Physical Location & Seq

Genomic Coordinates Reverse (-)

46034936 .. 46035610

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1339400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTGCATGGATCTTTCTTTATGCATGGGCTGGATCCATTGTCTTTGGGCTGGTGTTATACTTTTAACAGCAACAAAGTATATGGCAGTGATCGACATCATTTCAACTCACTCGCCTGATGAAGAGTATATTGGAGAAAGGAAGGATTTGTCGACGTGGTCAGCTAACACTGAGATTGTTGAAGCATTTTATAGGTTTTCAATGGAGATGAAGAAAATTGACAAGGAGATTGAAAGAAGAAATGTTGATTCAAATCTGAGGAACAGATGTGGGGCTGGGGTCTCACCATATGAGCTGCTCATGCCAAGCTCGAAGCCTGTGGTTACATGCAGAGGAGTTCCTAATAGTATAACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0016165 GO:0016491 GO:0016701 GO:0016702 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051213 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

120

Amino Acids

13.48

Weight (kDa)

5.65

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipoxygenase	PF00305	22 - 102	7.8e-26	Lipoxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000650)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17420 AT1G72520
fragaria_vesca	FvH4_4g01390 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970 FvH4_6g34970
malus_domestica	MD05G1339200.v1.1 MD05G1339300.v1.1 MD05G1339400.v1.1 MD09G1180900.v1.1 MD10G1294000.v1.1 MD17G1167100.v1.1
prunus_persica	Prupe.3G039200_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1 Prupe.4G047800_v2.0.a1
pyrus_communis	pycom09g09820 pycom09g09830 pycom10g24590 pycom17g15900
rosa_chinensis	RchiOBHm_Chr2g0145961 RchiOBHm_Chr3g0472481 RchiOBHm_Chr5g0008481 RchiOBHm_Chr5g0008501 RchiOBHm_Chr5g0008511
rosa_laevigata	RLG00000020179 RLG00000024076 RLG00000031573 RLG00000031574 RLG00000031576
rosa_multiflora	Rmu_sc0001665.1_g000013 Rmu_sc0001702.1_g000033 Rmu_sc0002145.1_g000002 Rmu_sc0034682.1_g000002
rosa_roxburghii	Rroxscaffold_152G00434820 Rroxscaffold_2G00100350
rosa_rugosa	Rorug02G0393500 Rorug03G0125900 Rorug04G0435900.1 Rorug04G0436000 Rorug04G0436400 Rorug04G0436400 Rorug04G0436500
rosa_samantha	Rh2BG460800 Rh2DG470100 Rh3AG177700 Rh3BG203600 Rh3CG194000 Rh3CG201100 Rh3DG171500 Rh5AG064800 Rh5AG064900 Rh5AG065200 Rh5BG061900 Rh5BG062100 Rh5BG062300 Rh5BG062400 Rh5BG062500 Rh5CG072000 Rh5CG072200 Rh5CG072300 Rh5CG072400 Rh5CG072600 Rh5CG072800 Rh5DG063500 Rh5DG063700 Rh5DG063900
rosa_wichuraiana	Rw2G036640 Rw3G016380 Rw5G005580 Rw5G005590 Rw5G005600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	152
AclWI	GGATC	3 cut(s)	18, 28, 41
AgsI	TTSAA	5 cut(s)	105, 182, 201, 233, 252
AjiI	CACGTC	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	3 cut(s)	164, 295, 309
AluI	AGCT	3 cut(s)	164, 295, 309
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	3 cut(s)	18, 28, 41
ApeKI	GCWGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	35
BsaBI	GATNNNNATC	2 cut(s)	95, 252
BsaI	GGTCTC	1 cut(s)	286
Bse8I	GATNNNNATC	2 cut(s)	95, 252
BseJI	GATNNNNATC	2 cut(s)	95, 252
BseMII	CTCAG	2 cut(s)	162, 248
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	282
BseYI	CCCAGC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	286
Bsp143I	GATC	3 cut(s)	10, 33, 90
BspCNI	CTCAG	2 cut(s)	163, 249
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	3 cut(s)	18, 28, 41
BspTNI	GGTCTC	1 cut(s)	286
BssMI	GATC	3 cut(s)	10, 33, 90
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	171, 257
BstKTI	GATC	3 cut(s)	13, 36, 93
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	3 cut(s)	10, 33, 90
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNSI	RCATGY	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	2 cut(s)	10, 33
BstYI	RGATCY	2 cut(s)	10, 33
BtrI	CACGTC	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 168
CviAII	CATG	4 cut(s)	7, 25, 301, 327
CviJI	RGCY	7 cut(s)	30, 50, 164, 275, 295, 309, 316
CviKI_1	RGCY	7 cut(s)	30, 50, 164, 275, 295, 309, 316
DdeI	CTNAG	2 cut(s)	171, 257
DpnI	GATC	3 cut(s)	12, 35, 92
DpnII	GATC	3 cut(s)	10, 33, 90
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	26
FaeI	CATG	4 cut(s)	10, 28, 304, 330
FatI	CATG	4 cut(s)	6, 24, 300, 326
FauNDI	CATATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	296
GsaI	CCCAGC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	10, 28, 304, 330
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	248
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	2 cut(s)	258, 359
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	6, 24, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	171, 257
HpySE526I	ACGT	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	10, 28, 304, 330
Kzo9I	GATC	3 cut(s)	10, 33, 90
LpnPI	CCDG	5 cut(s)	16, 36, 129, 261, 330
Lsp1109I	GCAGC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	3 cut(s)	12, 35, 92
MboI	GATC	3 cut(s)	10, 33, 90
MboII	GAAGA	3 cut(s)	134, 223, 249
MflI	RGATCY	2 cut(s)	10, 33
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	2 cut(s)	252, 326
Mph1103I	ATGCAT	1 cut(s)	26
MseI	TTAA	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	10, 33, 90
NlaIII	CATG	4 cut(s)	10, 28, 304, 330
NlaIV	GGNNCC	1 cut(s)	35
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	297
PspFI	CCCAGC	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	10, 33
PsyI	GACNNNGTC	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	3 cut(s)	10, 33, 90
SetI	ASST	5 cut(s)	158, 166, 197, 297, 311
Sse9I	AATT	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	93, 152, 311
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	93, 175
TseI	GCWGC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	135, 224
TspRI	CASTG	2 cut(s)	93, 175
Tth111I	GACNNNGTC	1 cut(s)	157
XceI	RCATGY	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.