Rh2DG470100

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
68108532 .. 68112720
4189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG470100.1

Sequence Viewer

Length: 1431 bp
ATGGCTCTGGCTAAAGAGATCGTGGGTTGTTCTATGATGGAGTACAAGTCTTCTTTGTCATCTCCATTTTTGAACCAAAACAAGTTTTTGATCAGACCCAGTTTGGTGAATCCTTCTAGGATGAGGAGGGATAATCTGGTGCATTTGAGGAAGGCTAAGAAGGGGGCTGTGGCTGCTATTAGTGAAGATTTGGTCAAAATTGTGCCTGTTTTCTCTGCAGCAGAGAAGCCTGTGAAGTTCAAGGTGAGAGCTGTGGTGACAGTTAGGAACAAGATCAAAGAGGATTTCAAAGAGGCCATTGCCAAACAGTTAGATGCTTTAACTGACAAAATTGGCAGAAATGTTGCTTTGGAGCTTGTCAGCACTGAGATTGACCCAAGAACAAAAGCAGCCAAGAAAAGCAGTGAAGGCGTTTTGAAGGACTGGTCAAAGAAATCAAATCTGAAAGCAGAGAGGGTGAATTACACAGCTGAGTTTGAGGTGGACTCCAATTTTGGAGTACCAGGAGCAATCACAGTTACTAATAAGCATCAAACAGAGTTCTTTTTGGAGACAATAACCATCGAAGGTTTCAACTGCGGTCCATTGCATTTCCCTTGTAATTCTTGGATGCAAGCCAAGAGAGATCACCCAGAAAAGAGAATTGTCTTCTGCAACAAGCCATATTTACCAAACCAGACTCCAGAGGGGCTTAAGGAATTGAGACAGAAAGAGCTGAAGAATCTTAGGGGTGATGGAAATGGAGTCAGAAAATTATCTGATAGGATCTATGACTATGCTTTGTATAATGACCTGGGGAACCCTGATAAGGGAATTGACCTTACTAGACCTACTCTTGGTGGTGAAAAAATTCCATATCCTAGAAGATGCCGCACCGGCCGTCTTCCAACTGATACTGATATGTTAACCGAGAGCAGGGTTGAGAAGCCACTACCAATGTATGTACCCAGAGATGAACAGTTTGAGGAGTCAAAAATGGACACATTTTCTTTTGGGAGGCTGAAGGGAGTGCTCCACAATTTGATCCCTTCCTTAATGTCAAGCTTCAAATCTGACAAAGACTTCCGTGGCTTTGCCGACATTGACAGCCTCTACAGCGAAGGCGTCCTTCTCAAACTGGGGTTACAAGAAGAAATCCTAAAGAAACTCCCATTGCCAAAAATGGTCAGCAAATTCCAGGACTACAACCAAGGAATTCTCAAATACGACATCCCTCAAATTCTTAGCAAGGACAAGTTCAGTTGGCTGCGAGATGACGAATTTGCCCGCCAAGCAGTGGCAGGGGTTAACCCATTGAGTATTGAGAGACTTGAATCTTTCCCACCAGTGAGCAAACTTGATCCTGAGGTTTATGGTCCAGTAGAATCTGCACTCAAAGAAGAACACATTTTACCTCATCTCTATGGCATGACTGTTCAACAGAAATTGTAA

Protein Analysis

476

Amino Acids

54.04

Weight (kDa)

9.18

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 133 - 217 1.4e-12 PLAT/LH2 domain
Lipoxygenase PF00305 230 - 475 4.8e-88 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1276
AciI CCGC 3 cut(s) 579, 871, 1267
AclWI GGATC 3 cut(s) 773, 1018, 1334
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 5 cut(s) 849, 1172, 1194, 1218, 1259
AcuI CTGAAG 2 cut(s) 737, 1022
AcyI GRCGYC 1 cut(s) 1104
AfaI GTAC 3 cut(s) 44, 501, 945
AfiI CCNNNNNNNGG 5 cut(s) 808, 809, 836, 915, 1276
AflII CTTAAG 1 cut(s) 692
AgsI TTSAA 8 cut(s) 73, 241, 289, 418, 574, 1048, 1313, 1418
AjnI CCWGG 3 cut(s) 502, 792, 1176
AluBI AGCT 5 cut(s) 251, 355, 470, 715, 1044
AluI AGCT 5 cut(s) 251, 355, 470, 715, 1044
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 3 cut(s) 545, 697, 1300
AlwI GGATC 3 cut(s) 773, 1018, 1334
AoxI GGCC 2 cut(s) 294, 877
ApeKI GCWGC 4 cut(s) 173, 218, 389, 1246
ApoI RAATTY 5 cut(s) 849, 1172, 1194, 1218, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
Asp700I GAANNNNTTC 1 cut(s) 849
AspS9I GGNCC 2 cut(s) 581, 1355
AsuHPI GGTGA 7 cut(s) 118, 256, 268, 469, 620, 743, 854
AvaII GGWCC 2 cut(s) 581, 1355
AxyI CCTNAGG 1 cut(s) 1344
BbsI GAAGAC 3 cut(s) 42, 640, 875
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 4 cut(s) 160, 230, 401, 1233
BccI CCATC 3 cut(s) 31, 569, 728
BceAI ACGGC 1 cut(s) 864
BciT130I CCWGG 3 cut(s) 504, 794, 1178
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 3 cut(s) 545, 697, 1300
BfaI CTAG 3 cut(s) 117, 825, 861
BfmI CTRYAG 2 cut(s) 216, 1093
BfrI CTTAAG 1 cut(s) 692
BglI GCCNNNNNGGC 1 cut(s) 876
BisI GCNGC 5 cut(s) 174, 219, 390, 871, 1247
BlsI GCNGC 5 cut(s) 175, 220, 391, 872, 1248
Bme1390I CCNGG 3 cut(s) 504, 794, 1178
Bme18I GGWCC 2 cut(s) 581, 1355
BmgT120I GGNCC 2 cut(s) 581, 1355
BmiI GGNNCC 1 cut(s) 800
BmrFI CCNGG 3 cut(s) 504, 794, 1178
BmrI ACTGGG 2 cut(s) 93, 1127
BmsI GCATC 4 cut(s) 304, 538, 600, 857
BmuI ACTGGG 2 cut(s) 93, 1127
BpiI GAAGAC 3 cut(s) 42, 640, 875
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpmI CTGGAG 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 1104
BsaJI CCNNGG 3 cut(s) 793, 1066, 1189
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 5 cut(s) 808, 809, 836, 915, 1276
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 5 cut(s) 99, 428, 1122, 1325, 1358
Bse21I CCTNAGG 1 cut(s) 1344
Bse3DI GCAATG 3 cut(s) 297, 584, 1151
BseBI CCWGG 3 cut(s) 504, 794, 1178
BseDI CCNNGG 3 cut(s) 793, 1066, 1189
BseGI GGATG 3 cut(s) 126, 615, 1209
BseLI CCNNNNNNNGG 5 cut(s) 808, 809, 836, 915, 1276
BseMI GCAATG 3 cut(s) 297, 584, 1151
BseMII CTCAG 3 cut(s) 357, 462, 1335
BseNI ACTGG 5 cut(s) 99, 428, 1122, 1325, 1358
BseRI GAGGAG 2 cut(s) 139, 980
BseX3I CGGCCG 1 cut(s) 877
BseXI GCAGC 4 cut(s) 160, 230, 401, 1233
BsgI GTGCAG 1 cut(s) 1353
Bsh1285I CGRYCG 1 cut(s) 880
BshFI GGCC 2 cut(s) 296, 879
BsiEI CGRYCG 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 1014
BsiSI CCGG 1 cut(s) 876
BslI CCNNNNNNNGG 5 cut(s) 808, 809, 836, 915, 1276
BsmAI GTCTC 3 cut(s) 545, 697, 1300
BsnI GGCC 2 cut(s) 296, 879
Bsp1286I GDGCHC 1 cut(s) 1014
Bsp143I GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
BspACI CCGC 3 cut(s) 579, 871, 1267
BspANI GGCC 2 cut(s) 296, 879
BspCNI CTCAG 3 cut(s) 358, 463, 1336
BspLI GGNNCC 1 cut(s) 800
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 3 cut(s) 773, 1018, 1334
BspTI CTTAAG 1 cut(s) 692
BsrDI GCAATG 3 cut(s) 297, 584, 1151
BsrFI RCCGGY 1 cut(s) 875
BsrI ACTGG 5 cut(s) 99, 428, 1122, 1325, 1358
BssAI RCCGGY 1 cut(s) 875
BssECI CCNNGG 3 cut(s) 793, 1066, 1189
BssMI GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
BssNI GRCGYC 1 cut(s) 1104
BssT1I CCWWGG 1 cut(s) 1189
Bst2UI CCWGG 3 cut(s) 504, 794, 1178
Bst4CI ACNGT 5 cut(s) 262, 309, 517, 960, 1414
BstACI GRCGYC 1 cut(s) 1104
BstAFI CTTAAG 1 cut(s) 692
BstC8I GCNNGC 2 cut(s) 615, 1267
BstDEI CTNAG 6 cut(s) 156, 366, 471, 725, 1223, 1344
BstDSI CCRYGG 1 cut(s) 1066
BstF5I GGATG 3 cut(s) 126, 615, 1209
BstKTI GATC 7 cut(s) 21, 93, 276, 628, 768, 1026, 1342
BstMAI GTCTC 3 cut(s) 545, 697, 1300
BstMBI GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
BstMCI CGRYCG 1 cut(s) 880
BstMWI GCNNNNNNNGC 5 cut(s) 173, 408, 876, 1095, 1271
BstNI CCWGG 3 cut(s) 504, 794, 1178
BstSCI CCNGG 3 cut(s) 502, 792, 1176
BstSFI CTRYAG 2 cut(s) 216, 1093
BstV1I GCAGC 4 cut(s) 160, 230, 401, 1233
BstV2I GAAGAC 3 cut(s) 42, 640, 875
BstX2I RGATCY 1 cut(s) 765
BstYI RGATCY 1 cut(s) 765
BstZI CGGCCG 1 cut(s) 877
Bsu36I CCTNAGG 1 cut(s) 1344
BsuRI GGCC 2 cut(s) 296, 879
BtgI CCRYGG 1 cut(s) 1066
BtsCI GGATG 3 cut(s) 126, 615, 1209
BtsI GCAGTG 2 cut(s) 409, 1281
BtsIMutI CAGTG 4 cut(s) 363, 409, 1281, 1332
Cac8I GCNNGC 2 cut(s) 615, 1267
Cfr10I RCCGGY 1 cut(s) 875
Cfr13I GGNCC 2 cut(s) 581, 1355
CseI GACGC 1 cut(s) 1093
Csp6I GTAC 3 cut(s) 43, 500, 944
CviAII CATG 1 cut(s) 1408
CviQI GTAC 3 cut(s) 43, 500, 944
DdeI CTNAG 6 cut(s) 156, 366, 471, 725, 1223, 1344
DpnI GATC 7 cut(s) 20, 92, 275, 627, 767, 1025, 1341
DpnII GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
EaeI YGGCCR 1 cut(s) 877
EagI CGGCCG 1 cut(s) 877
EclXI CGGCCG 1 cut(s) 877
Eco130I CCWWGG 1 cut(s) 1189
Eco47I GGWCC 2 cut(s) 581, 1355
Eco52I CGGCCG 1 cut(s) 877
Eco57I CTGAAG 2 cut(s) 737, 1022
Eco81I CCTNAGG 1 cut(s) 1344
EcoRI GAATTC 1 cut(s) 1194
EcoRII CCWGG 3 cut(s) 502, 792, 1176
EcoT14I CCWWGG 1 cut(s) 1189
ErhI CCWWGG 1 cut(s) 1189
FaeI CATG 1 cut(s) 1411
FalI AAGNNNNNCTT 2 cut(s) 1092, 1124
FatI CATG 1 cut(s) 1407
FauI CCCGC 1 cut(s) 1274
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 5 cut(s) 174, 219, 390, 871, 1247
FokI GGATG 3 cut(s) 133, 622, 1196
Fsp4HI GCNGC 5 cut(s) 174, 219, 390, 871, 1247
FspBI CTAG 3 cut(s) 117, 825, 861
GluI GCNGC 5 cut(s) 174, 219, 390, 871, 1247
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 2 cut(s) 296, 879
HapII CCGG 1 cut(s) 876
HgaI GACGC 1 cut(s) 1093
Hin1I GRCGYC 1 cut(s) 1104
Hin1II CATG 1 cut(s) 1411
HincII GTYRAC 2 cut(s) 906, 1288
HindII GTYRAC 2 cut(s) 906, 1288
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 8 cut(s) 109, 485, 679, 721, 744, 968, 1313, 1364
HpaI GTTAAC 2 cut(s) 906, 1288
HpaII CCGG 1 cut(s) 876
HphI GGTGA 7 cut(s) 118, 256, 268, 469, 620, 743, 854
Hpy166II GTNNAC 3 cut(s) 484, 906, 1288
Hpy188I TCNGA 5 cut(s) 95, 444, 749, 760, 1054
Hpy188III TCNNGA 2 cut(s) 683, 1343
Hpy8I GTNNAC 3 cut(s) 484, 906, 1288
HpyCH4III ACNGT 5 cut(s) 262, 309, 517, 960, 1414
HpyCH4V TGCA 6 cut(s) 142, 218, 589, 613, 654, 1370
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 408, 876, 1095, 1271
HpyF3I CTNAG 6 cut(s) 156, 366, 471, 725, 1223, 1344
Hsp92I GRCGYC 1 cut(s) 1104
Hsp92II CATG 1 cut(s) 1411
Ksp22I TGATCA 1 cut(s) 90
KspAI GTTAAC 2 cut(s) 906, 1288
Kzo9I GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
LmnI GCTCC 3 cut(s) 352, 506, 1017
Lsp1109I GCAGC 4 cut(s) 160, 230, 401, 1233
LweI GCATC 4 cut(s) 304, 538, 600, 857
MaeI CTAG 3 cut(s) 117, 825, 861
MaeIII GTNAC 3 cut(s) 256, 517, 1122
MalI GATC 7 cut(s) 20, 92, 275, 627, 767, 1025, 1341
MboI GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
MboII GAAGA 8 cut(s) 42, 197, 640, 730, 875, 876, 1142, 1391
MflI RGATCY 1 cut(s) 765
MhlI GDGCHC 1 cut(s) 1014
MlyI GAGTC 4 cut(s) 479, 673, 753, 977
MmeI TCCRAC 1 cut(s) 911
MroXI GAANNNNTTC 1 cut(s) 849
MseI TTAA 5 cut(s) 320, 693, 905, 1034, 1287
MslI CAYNNNNRTG 1 cut(s) 1401
MspA1I CMGCKG 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 692
MspI CCGG 1 cut(s) 876
MspR9I CCNGG 3 cut(s) 504, 794, 1178
MvaI CCWGG 3 cut(s) 504, 794, 1178
MwoI GCNNNNNNNGC 5 cut(s) 173, 408, 876, 1095, 1271
NdeII GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
NlaIII CATG 1 cut(s) 1411
NlaIV GGNNCC 1 cut(s) 800
NmuCI GTSAC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 4 cut(s) 109, 721, 1313, 1364
PflMI CCANNNNNTGG 1 cut(s) 1276
PfoI TCCNGGA 1 cut(s) 1176
PkrI GCNGC 5 cut(s) 175, 220, 391, 872, 1248
PleI GAGTC 4 cut(s) 479, 673, 752, 976
PpsI GAGTC 4 cut(s) 479, 673, 752, 976
Psp6I CCWGG 3 cut(s) 502, 792, 1176
PspGI CCWGG 3 cut(s) 502, 792, 1176
PspN4I GGNNCC 1 cut(s) 800
PspPI GGNCC 2 cut(s) 581, 1355
PsrI GAACNNNNNNTAC 2 cut(s) 1374, 1406
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 1 cut(s) 765
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 3 cut(s) 44, 501, 945
RsaNI GTAC 3 cut(s) 43, 500, 944
RseI CAYNNNNRTG 1 cut(s) 1401
SaqAI TTAA 5 cut(s) 320, 693, 905, 1034, 1287
SatI GCNGC 5 cut(s) 174, 219, 390, 871, 1247
Sau3AI GATC 7 cut(s) 18, 90, 273, 625, 765, 1023, 1339
Sau96I GGNCC 2 cut(s) 581, 1355
SchI GAGTC 4 cut(s) 479, 673, 753, 977
ScrFI CCNGG 3 cut(s) 504, 794, 1178
SduI GDGCHC 1 cut(s) 1014
SfaNI GCATC 4 cut(s) 304, 538, 600, 857
SfcI CTRYAG 2 cut(s) 216, 1093
SinI GGWCC 2 cut(s) 581, 1355
SmiMI CAYNNNNRTG 1 cut(s) 1401
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
SsiI CCGC 3 cut(s) 579, 871, 1267
SspMI CTAG 3 cut(s) 117, 825, 861
StyD4I CCNGG 3 cut(s) 502, 792, 1176
StyI CCWWGG 1 cut(s) 1189
TaaI ACNGT 5 cut(s) 262, 309, 517, 960, 1414
TaqI TCGA 1 cut(s) 564
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 873
TfiI GAWTC 4 cut(s) 109, 721, 1313, 1364
Tru1I TTAA 5 cut(s) 320, 693, 905, 1034, 1287
Tru9I TTAA 5 cut(s) 320, 693, 905, 1034, 1287
TscAI CASTG 4 cut(s) 370, 409, 1281, 1332
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 4 cut(s) 173, 218, 389, 1246
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 969
TspGWI ACGGA 1 cut(s) 1055
TspRI CASTG 4 cut(s) 370, 409, 1281, 1332
Van91I CCANNNNNTGG 1 cut(s) 1276
Vha464I CTTAAG 1 cut(s) 692
VpaK11BI GGWCC 2 cut(s) 581, 1355
XapI RAATTY 5 cut(s) 849, 1172, 1194, 1218, 1259
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 3 cut(s) 117, 825, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.