Rh5BG062500

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000650
Physical Location & Seq
Forward (+)
5124360 .. 5124695
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG062500.1

Sequence Viewer

Length: 336 bp
ATGCGGAGACTACTGCCACAAGAGCATGAACTAGAGTATGCTACTTTCATTAAGGATCCAGAGAAATATTTTCTATCGTCATTGCCAGATTTACTCGAAACAATAAAATATATGGCTGTGCTAGATATCATCTCAGCGCACTCCCCGGATGAGGAGTATATTGGGGAAAGAAAAGACTTGTCCACTTGGTCAGCTGACCCAGTTATCATTGAGGCATTCTACAGATTTTCAAAGGATATGAAGATGATTGAAAAGGAGATTGAACAACGAAATGCCGATTCAAGACTACGTAACAGATGTGGGGCTGGGGTTTCACCATATGAGCTGCTCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

111

Amino Acids

13.02

Weight (kDa)

4.93

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 1 - 110 1.2e-35 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 50, 63
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 4 cut(s) 231, 251, 263, 282
AluBI AGCT 2 cut(s) 194, 325
AluI AGCT 2 cut(s) 194, 325
AlwI GGATC 2 cut(s) 50, 63
ApeKI GCWGC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 306
BamHI GGATCC 1 cut(s) 55
BauI CACGAG 1 cut(s) 329
BbvI GCAGC 1 cut(s) 312
BcnI CCSGG 1 cut(s) 146
BfaI CTAG 2 cut(s) 32, 122
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 146
BmrI ACTGGG 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 200
Bse3DI GCAATG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 151
BsmI GAATGC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 2 cut(s) 50, 63
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 200
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 55
BssSI CACGAG 1 cut(s) 329
Bst2BI CACGAG 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 220
BstSNI TACGTA 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsCI GGATG 1 cut(s) 154
CfoI GCGC 1 cut(s) 139
CviAII CATG 1 cut(s) 26
CviJI RGCY 4 cut(s) 116, 194, 305, 325
CviKI_1 RGCY 4 cut(s) 116, 194, 305, 325
DdeI CTNAG 1 cut(s) 133
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eco105I TACGTA 1 cut(s) 290
Eco32I GATATC 1 cut(s) 127
EcoRV GATATC 1 cut(s) 127
FaeI CATG 1 cut(s) 29
FaiI YATR 8 cut(s) 27, 39, 111, 113, 159, 239, 319, 321
FatI CATG 1 cut(s) 25
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 326
FspBI CTAG 2 cut(s) 32, 122
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 326
GsaI CCCAGC 1 cut(s) 309
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 139
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 306
Hpy166II GTNNAC 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 59, 282
Hpy8I GTNNAC 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 5 cut(s) 72, 99, 159, 213, 291
Lsp1109I GCAGC 1 cut(s) 312
MaeI CTAG 2 cut(s) 32, 122
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 290
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 253
MflI RGATCY 1 cut(s) 55
MnlI CCTC 2 cut(s) 145, 205
MseI TTAA 1 cut(s) 51
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 319
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 57
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 327
Ppu21I YACGTR 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 55
PvuII CAGCTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 146
SetI ASST 3 cut(s) 196, 292, 327
SfcI CTRYAG 1 cut(s) 220
SnaBI TACGTA 1 cut(s) 290
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 68
SspMI CTAG 2 cut(s) 32, 122
StyD4I CCNGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TseI GCWGC 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 37, 42, 254
XspI CTAG 2 cut(s) 32, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.