Rh5BG062400

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000650
Physical Location & Seq
Forward (+)
5123793 .. 5124309
517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG062400.1

Sequence Viewer

Length: 420 bp
ATGGAGATTAGTTGTGCTGCCTATCGAGACTGGTGGCGTTTTGACCTTGAGGGCCTTCCTGCAGATCTCATCAGAAGAGCAATAGCAATACCAGACCCCAGTCAGGTCCATGGACTAAGACTACTGATTGAAGATTATCCTTACGCAGCAGATGGACTCCTCATATGGTCAGCAATTGAGAGATTGGTTCAAACCTATGTCCATTATTACTATCCTGATGCAACTGCGGTTGATTCTGATACAGAACTGCAAGCCTGGTACAAGGAATGGATCAATTTAGGCCATGCCGATCTTCGCCATGCTAGCTGGTGGCCACAACTCTGTACTCCAGATGATCTTGCCTCCATTCTCACCACCATCATTTGGCTCGCATCAGCACCACCATCATTTGGCTCGCATCAGCATACCATGCTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

139

Amino Acids

16.02

Weight (kDa)

4.84

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 1 - 126 1e-57 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 363, 389
AciI CCGC 1 cut(s) 227
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 311
AfaI GTAC 2 cut(s) 260, 325
AfiI CCNNNNNNNGG 3 cut(s) 103, 363, 389
AgsI TTSAA 2 cut(s) 131, 191
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 278
AoxI GGCC 3 cut(s) 52, 280, 311
ApeKI GCWGC 3 cut(s) 17, 146, 412
AspS9I GGNCC 2 cut(s) 52, 106
AsuHPI GGTGA 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 302
AvaII GGWCC 1 cut(s) 106
BalI TGGCCA 1 cut(s) 313
BbvI GCAGC 3 cut(s) 4, 158, 399
BccI CCATC 3 cut(s) 146, 365, 391
BciT130I CCWGG 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 64
BisI GCNGC 3 cut(s) 18, 147, 413
BlsI GCNGC 3 cut(s) 19, 148, 414
Bme1390I CCNGG 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 52, 106
BmrFI CCNGG 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 3 cut(s) 208, 380, 406
BmtI GCTAGC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 93
BoxI GACNNNNGTC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 363, 389
Bse1I ACTGG 2 cut(s) 35, 99
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 109
BseLI CCNNNNNNNGG 3 cut(s) 103, 363, 389
BseNI ACTGG 2 cut(s) 35, 99
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 3 cut(s) 4, 158, 399
BshFI GGCC 3 cut(s) 54, 282, 313
BslI CCNNNNNNNGG 3 cut(s) 103, 363, 389
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 3 cut(s) 54, 282, 313
Bsp143I GATC 4 cut(s) 64, 270, 289, 334
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 227
BspANI GGCC 3 cut(s) 54, 282, 313
BspMAI CTGCAG 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 70
BsrI ACTGG 2 cut(s) 35, 99
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 4 cut(s) 64, 270, 289, 334
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 256
Bst6I CTCTTC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 409
BstC8I GCNNGC 4 cut(s) 252, 304, 369, 395
BstDEI CTNAG 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 109
BstKTI GATC 4 cut(s) 67, 273, 292, 337
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 4 cut(s) 64, 270, 289, 334
BstMWI GCNNNNNNNGC 2 cut(s) 303, 409
BstNI CCWGG 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 4, 158, 399
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 3 cut(s) 54, 282, 313
BtgI CCRYGG 1 cut(s) 109
Cac8I GCNNGC 4 cut(s) 252, 304, 369, 395
Cfr13I GGNCC 2 cut(s) 52, 106
Csp6I GTAC 2 cut(s) 259, 324
CviAII CATG 4 cut(s) 110, 284, 299, 409
CviJI RGCY 7 cut(s) 54, 254, 282, 306, 313, 367, 393
CviKI_1 RGCY 7 cut(s) 54, 254, 282, 306, 313, 367, 393
CviQI GTAC 2 cut(s) 259, 324
DdeI CTNAG 1 cut(s) 116
DpnI GATC 4 cut(s) 66, 272, 291, 336
DpnII GATC 4 cut(s) 64, 270, 289, 334
EaeI YGGCCR 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 254
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 113, 287, 302, 412
FaiI YATR 8 cut(s) 111, 164, 166, 198, 285, 300, 405, 410
FatI CATG 4 cut(s) 109, 283, 298, 408
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 18, 147, 413
Fsp4HI GCNGC 3 cut(s) 18, 147, 413
FspBI CTAG 1 cut(s) 303
GluI GCNGC 3 cut(s) 18, 147, 413
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 3 cut(s) 54, 282, 313
Hin1II CATG 4 cut(s) 113, 287, 302, 412
HinfI GANTC 2 cut(s) 156, 233
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 2 cut(s) 74, 238
Hpy188III TCNNGA 3 cut(s) 26, 215, 329
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 62, 221, 250, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 409
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 4 cut(s) 113, 287, 302, 412
Kzo9I GATC 4 cut(s) 64, 270, 289, 334
LguI GCTCTTC 1 cut(s) 70
Lsp1109I GCAGC 3 cut(s) 4, 158, 399
LweI GCATC 3 cut(s) 208, 380, 406
MaeI CTAG 1 cut(s) 303
MalI GATC 4 cut(s) 66, 272, 291, 336
MboI GATC 4 cut(s) 64, 270, 289, 334
MboII GAAGA 3 cut(s) 87, 143, 284
MfeI CAATTG 1 cut(s) 174
MflI RGATCY 1 cut(s) 64
MlsI TGGCCA 1 cut(s) 313
MluCI AATT 2 cut(s) 174, 274
MluNI TGGCCA 1 cut(s) 313
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 3 cut(s) 43, 170, 352
Mox20I TGGCCA 1 cut(s) 313
MscI TGGCCA 1 cut(s) 313
Msp20I TGGCCA 1 cut(s) 313
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 303, 409
NcoI CCATGG 1 cut(s) 109
NdeI CATATG 1 cut(s) 164
NdeII GATC 4 cut(s) 64, 270, 289, 334
NheI GCTAGC 1 cut(s) 302
NlaIII CATG 4 cut(s) 113, 287, 302, 412
PciSI GCTCTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 2 cut(s) 363, 389
PkrI GCNGC 3 cut(s) 19, 148, 414
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PshAI GACNNNNGTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspPI GGNCC 2 cut(s) 52, 106
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 2 cut(s) 260, 325
RsaNI GTAC 2 cut(s) 259, 324
SapI GCTCTTC 1 cut(s) 70
SatI GCNGC 3 cut(s) 18, 147, 413
Sau3AI GATC 4 cut(s) 64, 270, 289, 334
Sau96I GGNCC 2 cut(s) 52, 106
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 256
SetI ASST 4 cut(s) 48, 108, 197, 308
SfaNI GCATC 3 cut(s) 208, 380, 406
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse9I AATT 2 cut(s) 174, 274
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 109
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 174, 274
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 1 cut(s) 233
TseI GCWGC 3 cut(s) 17, 146, 412
Van91I CCANNNNNTGG 2 cut(s) 363, 389
VpaK11BI GGWCC 1 cut(s) 106
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.