Rh5AG064800

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000650
Physical Location & Seq
Forward (+)
5428923 .. 5430411
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG064800.1

Sequence Viewer

Length: 741 bp
ATGCCTTCAGAACTCGCAGCAGGATCCGTTGATGTTGCAGTTGATGCGGCTTCAGAGAATGCGAAGCAGCAGCCTGCACTGACTTTGGAACTCACTGCGCTAGTAACTATCAAAAGGAAAAGTGAAAAGAAGTTAAATACTATGAAAGACATGATGCTTAGGCCGCTTGGCAATTATGCTTCACCAAATGGCCATGGTGATCATCATAAGCACTGGGGTGCTGTCCTACAGCTTGTTAGTACTCAAATCCACACAAAGGAAATGAAGCCAAACCTGAGTGAGGAAGCTATATTGGATTGGAATTTGAAAATGGGTGCCGGGAAGACCAGTACTTACCAAGTTAAATTTGTGGTGGATTCTAACTTTGGGATGCCAGGAGCCACCACGGTTAGCAACAGAGACCAGAGCGAGTTCTATTTGGATAGCATCAACATTGAAGGTGTTATTAATTTTGCCTGCAACTCTTGGGTTCAACCAGAGTGCAAAAACCCAGCAAAAAGAATCTTCTTCTCTGCCAATAAGATACAATCCAGTATTCAATTTCGGTTTCTGCATAACTGTACTAATACTAGTGAAATCCACATTGATAATAAAACAGATAAGAATCTGGAGTCACCAGTAAATGAATTCCTGATGGCCTATGTGCCGAGAGATGAAGAGTTTGAGGAGTCCAAGATAGAAGCTCTTGATCTTGGAAAGTTAAAGGCAATTCTGAGGCACTGTAAAGTTAGACGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

246

Amino Acids

27.65

Weight (kDa)

7.71

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 98 - 170 2.1e-07 PLAT/LH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AciI CCGC 2 cut(s) 47, 164
AclWI GGATC 2 cut(s) 18, 31
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 3 cut(s) 301, 344, 626
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 3 cut(s) 241, 331, 562
AfiI CCNNNNNNNGG 2 cut(s) 256, 280
AgsI TTSAA 4 cut(s) 307, 437, 473, 539
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 3 cut(s) 232, 287, 683
AluI AGCT 3 cut(s) 232, 287, 683
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 2 cut(s) 18, 31
AoxI GGCC 3 cut(s) 161, 190, 636
ApeKI GCWGC 3 cut(s) 17, 67, 70
ApoI RAATTY 3 cut(s) 301, 344, 626
AseI ATTAAT 1 cut(s) 447
AspLEI GCGC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 3 cut(s) 174, 209, 606
BalI TGGCCA 1 cut(s) 192
BamHI GGATCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 3 cut(s) 29, 79, 82
BccI CCATC 1 cut(s) 628
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 393
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 2 cut(s) 101, 570
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 5 cut(s) 18, 48, 68, 71, 164
BlsI GCNGC 5 cut(s) 19, 49, 69, 72, 165
BmcAI AGTACT 2 cut(s) 241, 331
Bme1390I CCNGG 2 cut(s) 319, 375
BmiI GGNNCC 3 cut(s) 25, 316, 379
BmrFI CCNGG 2 cut(s) 319, 375
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 4 cut(s) 34, 144, 360, 435
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 329
BpmI CTGGAG 1 cut(s) 629
Bpu10I CCTNAGC 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 193, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 280
Bse1I ACTGG 4 cut(s) 218, 327, 531, 617
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 193, 384
BseGI GGATG 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 256, 280
BseMII CTCAG 2 cut(s) 266, 704
BseNI ACTGG 4 cut(s) 218, 327, 531, 617
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 3 cut(s) 29, 79, 82
BseYI CCCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 3 cut(s) 163, 192, 638
BshNI GGYRCC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 256, 280
BsmAI GTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 3 cut(s) 163, 192, 638
Bso31I GGTCTC 1 cut(s) 393
Bsp143I GATC 3 cut(s) 23, 199, 688
Bsp19I CCATGG 1 cut(s) 193
BspACI CCGC 2 cut(s) 47, 164
BspANI GGCC 3 cut(s) 163, 192, 638
BspCNI CTCAG 2 cut(s) 267, 705
BspLI GGNNCC 3 cut(s) 25, 316, 379
BspPI GGATC 2 cut(s) 18, 31
BspT107I GGYRCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 393
BsrI ACTGG 4 cut(s) 218, 327, 531, 617
BssECI CCNNGG 2 cut(s) 193, 384
BssMI GATC 3 cut(s) 23, 199, 688
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 3 cut(s) 388, 560, 722
Bst6I CTCTTC 1 cut(s) 651
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 75, 457
BstDEI CTNAG 3 cut(s) 158, 275, 713
BstDSI CCRYGG 2 cut(s) 193, 384
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 26, 202, 691
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 3 cut(s) 23, 199, 688
BstMWI GCNNNNNNNGC 2 cut(s) 44, 163
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 2 cut(s) 317, 373
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 3 cut(s) 29, 79, 82
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 3 cut(s) 163, 192, 638
BtgI CCRYGG 2 cut(s) 193, 384
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 4 cut(s) 77, 93, 211, 718
Cac8I GCNNGC 2 cut(s) 75, 457
CfoI GCGC 1 cut(s) 100
Csp6I GTAC 3 cut(s) 240, 330, 561
CviAII CATG 2 cut(s) 151, 194
CviQI GTAC 3 cut(s) 240, 330, 561
DdeI CTNAG 3 cut(s) 158, 275, 713
DpnI GATC 3 cut(s) 25, 201, 690
DpnII GATC 3 cut(s) 23, 199, 688
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 154, 197
FaiI YATR 8 cut(s) 143, 152, 177, 195, 207, 290, 555, 642
FatI CATG 2 cut(s) 150, 193
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 5 cut(s) 18, 48, 68, 71, 164
FspBI CTAG 2 cut(s) 101, 570
GlaI GCGC 1 cut(s) 99
GluI GCNGC 5 cut(s) 18, 48, 68, 71, 164
GsaI CCCAGC 1 cut(s) 494
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 3 cut(s) 163, 192, 638
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 154, 197
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 5 cut(s) 356, 501, 604, 611, 668
HpaII CCGG 1 cut(s) 318
HphI GGTGA 3 cut(s) 174, 209, 606
Hpy188I TCNGA 3 cut(s) 10, 55, 714
Hpy188III TCNNGA 3 cut(s) 608, 631, 686
HpyAV CCTTC 2 cut(s) 15, 431
HpyCH4III ACNGT 3 cut(s) 388, 560, 722
HpyCH4V TGCA 5 cut(s) 38, 77, 459, 483, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 163
HpyF3I CTNAG 3 cut(s) 158, 275, 713
Hsp92II CATG 2 cut(s) 154, 197
HspAI GCGC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 23, 199, 688
LmnI GCTCC 1 cut(s) 377
Lsp1109I GCAGC 3 cut(s) 29, 79, 82
LweI GCATC 4 cut(s) 34, 144, 360, 435
MaeI CTAG 2 cut(s) 101, 570
MaeIII GTNAC 2 cut(s) 103, 612
MalI GATC 3 cut(s) 25, 201, 690
MboI GATC 3 cut(s) 23, 199, 688
MboII GAAGA 4 cut(s) 334, 496, 499, 668
MflI RGATCY 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 192
MluCI AATT 7 cut(s) 172, 301, 344, 448, 539, 626, 708
MluNI TGGCCA 1 cut(s) 192
MlyI GAGTC 2 cut(s) 620, 677
MnlI CCTC 3 cut(s) 274, 658, 708
Mox20I TGGCCA 1 cut(s) 192
MscI TGGCCA 1 cut(s) 192
MseI TTAA 4 cut(s) 134, 342, 447, 701
MslI CAYNNNNRTG 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 192
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 319, 375
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 44, 163
NciI CCSGG 1 cut(s) 319
NcoI CCATGG 1 cut(s) 193
NdeII GATC 3 cut(s) 23, 199, 688
NlaIII CATG 2 cut(s) 154, 197
NlaIV GGNNCC 3 cut(s) 25, 316, 379
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 1 cut(s) 612
OliI CACNNNNGTG 1 cut(s) 216
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 356, 501, 604
PkrI GCNGC 5 cut(s) 19, 49, 69, 72, 165
PleI GAGTC 2 cut(s) 619, 676
PpsI GAGTC 2 cut(s) 619, 676
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 25, 316, 379
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 3 cut(s) 241, 331, 562
RsaNI GTAC 3 cut(s) 240, 330, 561
RseI CAYNNNNRTG 1 cut(s) 216
SaqAI TTAA 4 cut(s) 134, 342, 447, 701
SatI GCNGC 5 cut(s) 18, 48, 68, 71, 164
Sau3AI GATC 3 cut(s) 23, 199, 688
ScaI AGTACT 2 cut(s) 241, 331
SchI GAGTC 2 cut(s) 620, 677
ScrFI CCNGG 2 cut(s) 319, 375
SetI ASST 5 cut(s) 234, 276, 289, 442, 685
SfaNI GCATC 4 cut(s) 34, 144, 360, 435
SfcI CTRYAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 216
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 7 cut(s) 172, 301, 344, 448, 539, 626, 708
SsiI CCGC 2 cut(s) 47, 164
SspMI CTAG 2 cut(s) 101, 570
StyD4I CCNGG 2 cut(s) 317, 373
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 3 cut(s) 388, 560, 722
TasI AATT 7 cut(s) 172, 301, 344, 448, 539, 626, 708
TatI WGTACW 3 cut(s) 239, 329, 560
TauI GCSGC 2 cut(s) 50, 166
TfiI GAWTC 3 cut(s) 356, 501, 604
Tru1I TTAA 4 cut(s) 134, 342, 447, 701
Tru9I TTAA 4 cut(s) 134, 342, 447, 701
TscAI CASTG 4 cut(s) 84, 100, 218, 725
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 3 cut(s) 17, 67, 70
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 4 cut(s) 158, 278, 639, 669
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 4 cut(s) 84, 100, 218, 725
VspI ATTAAT 1 cut(s) 447
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 3 cut(s) 301, 344, 626
XspI CTAG 2 cut(s) 101, 570
ZrmI AGTACT 2 cut(s) 241, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.