Rw5G005590

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000650
Physical Location & Seq
Reverse (-)
5940088 .. 5941130
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G005590.1

Sequence Viewer

Length: 801 bp
ATGGCAAGAAACATTATGGACACATTTGCAGTAGAAGCATTACCTTTGAATATTAGGAGGCATCATTATAACATGCACCCTTCTAGTTTCGCCATTAATTTCATTTGTTCAACGAAGAGGAGATGGCATCCAAGTGAGAGAAGGAAAGTGGCGGCCGCCCGTGCTCGTTCGGATCATATACCAGCATCCACCGCCGTTGCTGTTGGAGTTGCTGCAGAGAACGAGAAGCAGCAGCCTTTGGAACTCGCAGCAGGATCCGTTGATGTTGTAGTTGATGCGGCTTCAGAGAATGTGAAGCACCAGCCTGCAGTGACTTTGGAACTCACTGCACTAGTCACTGTCAAAAGGAAAAGTGAAAATAAGTTAAATACCATGAAAGAGATGATGCTTAGGCGGTTTGGCAATTATGCTTCACATAATGGCCATGGTGATCATCATAATCACAAGGGTGTTGTGCTACAGCTTGTTAGTACACAAATCCACACAAAGGAAATGAAGCCAAACCTGAGTGAGGAAGCTATATTGGATTGGACAAGGAATTTGAAAATGGGTGCCGGGAAGACCAGTACTTACGAAGTTAAATTTGTGGTGGATTCTAACTTTGGGATGCCGGGAGCCATCACGGTTAGCAACAGAGACCGGAGCGAGTTCTATTTGGATAGCATCAACATTGAAGGTGCTATTAATTTTGCCTGCAACTCTTGGGTTCAACCAGAGTGCGAAAACCCTGCAAAAAGAATCTTCTTCTCTACCAATAAGGCATACTTACCTAGTGAAACACCAGCAGGGCTGAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

266

Amino Acids

29.66

Weight (kDa)

9.22

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAT PF01477 169 - 249 8.2e-09 PLAT/LH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 551
AciI CCGC 5 cut(s) 152, 156, 192, 278, 394
AclWI GGATC 3 cut(s) 180, 249, 262
AcoI YGGCCR 2 cut(s) 153, 421
AcsI RAATTY 2 cut(s) 538, 581
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 472, 568
AfiI CCNNNNNNNGG 2 cut(s) 487, 511
AgsI TTSAA 5 cut(s) 49, 111, 544, 674, 710
AhlI ACTAGT 1 cut(s) 331
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 2 cut(s) 463, 518
AluI AGCT 2 cut(s) 463, 518
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 630
AlwI GGATC 3 cut(s) 180, 249, 262
AoxI GGCC 2 cut(s) 153, 421
ApeKI GCWGC 4 cut(s) 212, 229, 232, 248
ApoI RAATTY 2 cut(s) 538, 581
ArsI GACNNNNNNTTYG 2 cut(s) 523, 555
AseI ATTAAT 2 cut(s) 96, 684
AsuC2I CCSGG 2 cut(s) 556, 612
AsuHPI GGTGA 1 cut(s) 440
BalI TGGCCA 1 cut(s) 423
BamHI GGATCC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 199, 241, 244, 260
BccI CCATC 2 cut(s) 117, 626
BceAI ACGGC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 710, 744
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 2 cut(s) 556, 612
BcoDI GTCTC 1 cut(s) 630
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 3 cut(s) 84, 332, 771
BfmI CTRYAG 3 cut(s) 213, 306, 458
BisI GCNGC 7 cut(s) 153, 156, 213, 230, 233, 249, 279
BlsI GCNGC 7 cut(s) 154, 157, 214, 231, 234, 250, 280
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 2 cut(s) 556, 612
BmiI GGNNCC 3 cut(s) 256, 553, 616
BmrFI CCNGG 2 cut(s) 556, 612
BmsI GCATC 7 cut(s) 70, 136, 194, 265, 375, 597, 672
BpiI GAAGAC 1 cut(s) 566
Bpu10I CCTNAGC 1 cut(s) 389
BpuMI CCSGG 2 cut(s) 556, 612
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 424
BsaWI WCCGGW 1 cut(s) 639
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 511
Bse1I ACTGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 3 cut(s) 127, 185, 612
BseLI CCNNNNNNNGG 2 cut(s) 487, 511
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 1 cut(s) 133
BseX3I CGGCCG 1 cut(s) 153
BseXI GCAGC 4 cut(s) 199, 241, 244, 260
BsgI GTGCAG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 2 cut(s) 155, 423
BshNI GGYRCC 1 cut(s) 551
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 3 cut(s) 555, 611, 640
BslI CCNNNNNNNGG 2 cut(s) 487, 511
BsmAI GTCTC 1 cut(s) 630
BsnI GGCC 2 cut(s) 155, 423
Bso31I GGTCTC 1 cut(s) 630
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 172, 254, 430
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 5 cut(s) 152, 156, 192, 278, 394
BspANI GGCC 2 cut(s) 155, 423
BspCNI CTCAG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 256, 553, 616
BspMAI CTGCAG 2 cut(s) 217, 310
BspPI GGATC 3 cut(s) 180, 249, 262
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 630
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 3 cut(s) 172, 254, 430
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 340, 625
Bst6I CTCTTC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 306, 694
BstDEI CTNAG 2 cut(s) 389, 506
BstDSI CCRYGG 1 cut(s) 424
BstENI CCTNNNNNAGG 1 cut(s) 509
BstF5I GGATG 3 cut(s) 127, 185, 612
BstKTI GATC 3 cut(s) 175, 257, 433
BstMAI GTCTC 1 cut(s) 630
BstMBI GATC 3 cut(s) 172, 254, 430
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 35, 161, 191
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 554, 610
BstSFI CTRYAG 3 cut(s) 213, 306, 458
BstV1I GCAGC 4 cut(s) 199, 241, 244, 260
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BstZI CGGCCG 1 cut(s) 153
BsuRI GGCC 2 cut(s) 155, 423
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 3 cut(s) 127, 185, 612
BtsI GCAGTG 2 cut(s) 315, 324
BtsIMutI CAGTG 3 cut(s) 315, 324, 336
Cac8I GCNNGC 2 cut(s) 306, 694
CciNI GCGGCCGC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 471, 567
CspCI CAANNNNNGTGG 2 cut(s) 178, 213
CviAII CATG 3 cut(s) 73, 373, 425
CviQI GTAC 2 cut(s) 471, 567
DdeI CTNAG 2 cut(s) 389, 506
DpnI GATC 3 cut(s) 174, 256, 432
DpnII GATC 3 cut(s) 172, 254, 430
EaeI YGGCCR 2 cut(s) 153, 421
EagI CGGCCG 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EclXI CGGCCG 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 424
Eco31I GGTCTC 1 cut(s) 630
Eco52I CGGCCG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 3 cut(s) 76, 376, 428
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FatI CATG 3 cut(s) 72, 372, 424
FbaI TGATCA 1 cut(s) 430
Fnu4HI GCNGC 7 cut(s) 153, 156, 213, 230, 233, 249, 279
FokI GGATG 3 cut(s) 114, 172, 619
Fsp4HI GCNGC 7 cut(s) 153, 156, 213, 230, 233, 249, 279
FspBI CTAG 3 cut(s) 84, 332, 771
GluI GCNGC 7 cut(s) 153, 156, 213, 230, 233, 249, 279
HaeIII GGCC 2 cut(s) 155, 423
HapII CCGG 3 cut(s) 555, 611, 640
Hin1II CATG 3 cut(s) 76, 376, 428
HinfI GANTC 2 cut(s) 593, 738
HpaII CCGG 3 cut(s) 555, 611, 640
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 172, 286
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 90, 135, 668
HpyCH4III ACNGT 2 cut(s) 340, 625
HpyCH4V TGCA 7 cut(s) 29, 76, 215, 308, 329, 696, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 161, 191
HpyF3I CTNAG 2 cut(s) 389, 506
Hsp92II CATG 3 cut(s) 76, 376, 428
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 3 cut(s) 172, 254, 430
LmnI GCTCC 2 cut(s) 614, 642
Lsp1109I GCAGC 4 cut(s) 199, 241, 244, 260
LweI GCATC 7 cut(s) 70, 136, 194, 265, 375, 597, 672
MaeI CTAG 3 cut(s) 84, 332, 771
MaeIII GTNAC 2 cut(s) 310, 334
MalI GATC 3 cut(s) 174, 256, 432
MboI GATC 3 cut(s) 172, 254, 430
MboII GAAGA 4 cut(s) 127, 571, 733, 736
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 5 cut(s) 97, 403, 538, 581, 685
MluNI TGGCCA 1 cut(s) 423
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 51, 111, 505
Mox20I TGGCCA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 423
MseI TTAA 4 cut(s) 96, 365, 579, 684
MslI CAYNNNNRTG 2 cut(s) 132, 447
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 3 cut(s) 555, 611, 640
MspR9I CCNGG 2 cut(s) 556, 612
MwoI GCNNNNNNNGC 3 cut(s) 35, 161, 191
NciI CCSGG 2 cut(s) 556, 612
NcoI CCATGG 1 cut(s) 424
NdeII GATC 3 cut(s) 172, 254, 430
NlaIII CATG 3 cut(s) 76, 376, 428
NlaIV GGNNCC 3 cut(s) 256, 553, 616
NmuCI GTSAC 2 cut(s) 310, 334
NotI GCGGCCGC 1 cut(s) 153
NspI RCATGY 1 cut(s) 76
OliI CACNNNNGTG 1 cut(s) 447
PfeI GAWTC 2 cut(s) 593, 738
PkrI GCNGC 7 cut(s) 154, 157, 214, 231, 234, 250, 280
PshBI ATTAAT 2 cut(s) 96, 684
PsiI TTATAA 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 256, 553, 616
PstI CTGCAG 2 cut(s) 217, 310
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 2 cut(s) 472, 568
RsaNI GTAC 2 cut(s) 471, 567
RseI CAYNNNNRTG 2 cut(s) 132, 447
SaqAI TTAA 4 cut(s) 96, 365, 579, 684
SatI GCNGC 7 cut(s) 153, 156, 213, 230, 233, 249, 279
Sau3AI GATC 3 cut(s) 172, 254, 430
ScaI AGTACT 1 cut(s) 568
ScrFI CCNGG 2 cut(s) 556, 612
SduI GDGCHC 1 cut(s) 166
SetI ASST 6 cut(s) 46, 465, 507, 520, 679, 772
SfaNI GCATC 7 cut(s) 70, 136, 194, 265, 375, 597, 672
SfcI CTRYAG 3 cut(s) 213, 306, 458
SmiMI CAYNNNNRTG 2 cut(s) 132, 447
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 5 cut(s) 97, 403, 538, 581, 685
SsiI CCGC 5 cut(s) 152, 156, 192, 278, 394
SspI AATATT 1 cut(s) 52
SspMI CTAG 3 cut(s) 84, 332, 771
StyD4I CCNGG 2 cut(s) 554, 610
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 340, 625
TasI AATT 5 cut(s) 97, 403, 538, 581, 685
TatI WGTACW 2 cut(s) 470, 566
TauI GCSGC 3 cut(s) 155, 158, 281
TfiI GAWTC 2 cut(s) 593, 738
Tru1I TTAA 4 cut(s) 96, 365, 579, 684
Tru9I TTAA 4 cut(s) 96, 365, 579, 684
TscAI CASTG 3 cut(s) 315, 331, 343
TseFI GTSAC 2 cut(s) 310, 334
TseI GCWGC 4 cut(s) 212, 229, 232, 248
Tsp45I GTSAC 2 cut(s) 310, 334
TspDTI ATGAA 3 cut(s) 91, 389, 509
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 3 cut(s) 315, 331, 343
VspI ATTAAT 2 cut(s) 96, 684
XagI CCTNNNNNAGG 1 cut(s) 509
XapI RAATTY 2 cut(s) 538, 581
XceI RCATGY 1 cut(s) 76
XspI CTAG 3 cut(s) 84, 332, 771
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.