Rh5CG072200

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000650
Physical Location & Seq
Forward (+)
5400866 .. 5401615
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG072200.1

Sequence Viewer

Length: 651 bp
ATGGCAACCCACCGGCAGCTGGGTGCGATGCATCCCATCTACAGGCTTCTCAAACCTCACATGCGATACACGATGAAGATAAATGCATTGGCCCGTCAATTTCTGATCAATTCTGAAGGAATAATCGAGTCGACTTTCACTGCTGGCAAACATAGCATGGAGATTAGTTGTGCTGCATATCGGGACTGGTGGCGCTTTGACCTTGAGGGCCTTCCTGCAGATCTCATCAGAAGAGGGATGGCAATACCAGACCCCAGTCAGGTCCATGGACTAAGATTACTGATCGAAGATTATCCTTACGCAACAGATGGGCTTCTCATATGGACAGCAATTAAGAGATTGGTTCAAACCTATGTCCATTATTACTATCCTGATGCAAGTGTGGTTCATTATGATACAGAACTACAAACCTGGTACAAGGAATGGATCAATTCAGGCCATGCTGATCTTCGCCATGCTAATTGGTGGCCAAAACTCTCTACTCCAGATGATCTTGTCTCCATTCTCACCACCATAATTTGGCTCTCATCAGCATTCCACGCTGCATTGAATAATGGGCAGTATCCATATGGCGGATATGTCCCAACCTGCCCCCCAAACATGCGGAGATTACTGCCACAAGAGCATGAACTAGCACGCTACTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

216

Amino Acids

25.19

Weight (kDa)

7.21

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 1 - 210 9.4e-106 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 596
AccB7I CCANNNNNTGG 1 cut(s) 519
AccI GTMKAC 1 cut(s) 131
AciI CCGC 2 cut(s) 573, 604
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 5 cut(s) 19, 42, 259, 519, 572
AgsI TTSAA 2 cut(s) 347, 550
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 502
AlwI GGATC 1 cut(s) 434
AoxI GGCC 4 cut(s) 90, 208, 436, 467
ApeKI GCWGC 3 cut(s) 16, 173, 542
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 91, 208, 262
AsuHPI GGTGA 1 cut(s) 499
AvaII GGWCC 1 cut(s) 262
BalI TGGCCA 1 cut(s) 469
BbvI GCAGC 3 cut(s) 28, 160, 529
BccI CCATC 3 cut(s) 44, 232, 302
BciT130I CCWGG 1 cut(s) 412
BciVI GTATCC 1 cut(s) 573
BclI TGATCA 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 502
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 2 cut(s) 40, 216
BfoI RGCGCY 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 596
BfuI GTATCC 1 cut(s) 573
BglII AGATCT 1 cut(s) 220
BisI GCNGC 3 cut(s) 17, 174, 543
BlsI GCNGC 3 cut(s) 18, 175, 544
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 3 cut(s) 91, 208, 262
BmrFI CCNGG 1 cut(s) 412
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 3 cut(s) 18, 40, 364
BmuI ACTGGG 1 cut(s) 249
BoxI GACNNNNGTC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 42, 259, 519, 572
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 191, 255
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 2 cut(s) 31, 243
BseLI CCNNNNNNNGG 5 cut(s) 19, 42, 259, 519, 572
BseNI ACTGG 2 cut(s) 191, 255
BseXI GCAGC 3 cut(s) 28, 160, 529
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 4 cut(s) 92, 210, 438, 469
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 2 cut(s) 197, 566
BslI CCNNNNNNNGG 5 cut(s) 19, 42, 259, 519, 572
BsmAI GTCTC 1 cut(s) 502
BsmFI GGGAC 2 cut(s) 197, 566
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 4 cut(s) 92, 210, 438, 469
Bsp143I GATC 6 cut(s) 105, 220, 282, 426, 445, 490
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 2 cut(s) 573, 604
BspANI GGCC 4 cut(s) 92, 210, 438, 469
BspMAI CTGCAG 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 596
BspPI GGATC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 2 cut(s) 191, 255
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 6 cut(s) 105, 220, 282, 426, 445, 490
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 145, 637
BstDEI CTNAG 1 cut(s) 272
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 2 cut(s) 31, 243
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 6 cut(s) 108, 223, 285, 429, 448, 493
BstMAI GTCTC 1 cut(s) 502
BstMBI GATC 6 cut(s) 105, 220, 282, 426, 445, 490
BstMWI GCNNNNNNNGC 3 cut(s) 153, 539, 622
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 64, 604
BstPAI GACNNNNGTC 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 410
BstSFI CTRYAG 2 cut(s) 40, 216
BstV1I GCAGC 3 cut(s) 28, 160, 529
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuI GTATCC 1 cut(s) 573
BsuRI GGCC 4 cut(s) 92, 210, 438, 469
BtgI CCRYGG 1 cut(s) 265
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 31, 243
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 596
Cac8I GCNNGC 2 cut(s) 145, 637
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 3 cut(s) 91, 208, 262
CsiI ACCWGGT 1 cut(s) 410
Csp6I GTAC 1 cut(s) 415
CviAII CATG 7 cut(s) 61, 157, 266, 440, 455, 601, 626
CviJI RGCY 8 cut(s) 19, 46, 92, 210, 313, 438, 469, 523
CviKI_1 RGCY 8 cut(s) 19, 46, 92, 210, 313, 438, 469, 523
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 1 cut(s) 272
DpnI GATC 6 cut(s) 107, 222, 284, 428, 447, 492
DpnII GATC 6 cut(s) 105, 220, 282, 426, 445, 490
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 588
Eco130I CCWWGG 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 410
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 2 cut(s) 33, 88
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 7 cut(s) 64, 160, 269, 443, 458, 604, 629
FaqI GGGAC 2 cut(s) 197, 566
FatI CATG 7 cut(s) 60, 156, 265, 439, 454, 600, 625
FauNDI CATATG 2 cut(s) 320, 568
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 1 cut(s) 131
Fnu4HI GCNGC 3 cut(s) 17, 174, 543
FokI GGATG 2 cut(s) 18, 250
Fsp4HI GCNGC 3 cut(s) 17, 174, 543
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 17, 174, 543
GsaI CCCAGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 196
HaeIII GGCC 4 cut(s) 92, 210, 438, 469
HapII CCGG 1 cut(s) 13
HhaI GCGC 1 cut(s) 195
Hin1II CATG 7 cut(s) 64, 160, 269, 443, 458, 604, 629
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 13
HphI GGTGA 1 cut(s) 499
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 105, 115, 230
Hpy188III TCNNGA 3 cut(s) 182, 371, 485
Hpy8I GTNNAC 1 cut(s) 132
HpyAV CCTTC 2 cut(s) 110, 221
HpyCH4V TGCA 6 cut(s) 31, 86, 176, 218, 377, 545
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 539, 622
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 7 cut(s) 64, 160, 269, 443, 458, 604, 629
HspAI GCGC 1 cut(s) 193
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 6 cut(s) 105, 220, 282, 426, 445, 490
Lsp1109I GCAGC 3 cut(s) 28, 160, 529
LweI GCATC 3 cut(s) 18, 40, 364
MabI ACCWGGT 1 cut(s) 410
MaeI CTAG 1 cut(s) 632
MalI GATC 6 cut(s) 107, 222, 284, 428, 447, 492
MboI GATC 6 cut(s) 105, 220, 282, 426, 445, 490
MboII GAAGA 4 cut(s) 88, 243, 299, 440
MflI RGATCY 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 6 cut(s) 98, 109, 330, 430, 460, 516
MluNI TGGCCA 1 cut(s) 469
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 3 cut(s) 66, 199, 227
Mox20I TGGCCA 1 cut(s) 469
Mph1103I ATGCAT 2 cut(s) 33, 88
MscI TGGCCA 1 cut(s) 469
MseI TTAA 2 cut(s) 333, 649
Msp20I TGGCCA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 412
Mva1269I GAATGC 1 cut(s) 533
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 3 cut(s) 153, 539, 622
NcoI CCATGG 1 cut(s) 265
NdeI CATATG 2 cut(s) 320, 568
NdeII GATC 6 cut(s) 105, 220, 282, 426, 445, 490
NlaIII CATG 7 cut(s) 64, 160, 269, 443, 458, 604, 629
NsiI ATGCAT 2 cut(s) 33, 88
NspI RCATGY 2 cut(s) 64, 604
PctI GAATGC 1 cut(s) 533
PflMI CCANNNNNTGG 1 cut(s) 519
PkrI GCNGC 3 cut(s) 18, 175, 544
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 410
PspPI GGNCC 3 cut(s) 91, 208, 262
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 1 cut(s) 220
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 333, 649
SatI GCNGC 3 cut(s) 17, 174, 543
Sau3AI GATC 6 cut(s) 105, 220, 282, 426, 445, 490
Sau96I GGNCC 3 cut(s) 91, 208, 262
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 412
SetI ASST 7 cut(s) 21, 58, 204, 264, 353, 413, 590
SexAI ACCWGGT 1 cut(s) 410
SfaNI GCATC 3 cut(s) 18, 40, 364
SfcI CTRYAG 2 cut(s) 40, 216
SinI GGWCC 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 6 cut(s) 98, 109, 330, 430, 460, 516
SsiI CCGC 2 cut(s) 573, 604
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 265
TaqI TCGA 3 cut(s) 126, 131, 285
TasI AATT 6 cut(s) 98, 109, 330, 430, 460, 516
Tru1I TTAA 2 cut(s) 333, 649
Tru9I TTAA 2 cut(s) 333, 649
TscAI CASTG 1 cut(s) 145
TseI GCWGC 3 cut(s) 16, 173, 542
TspDTI ATGAA 4 cut(s) 89, 377, 635, 642
TspRI CASTG 1 cut(s) 145
Van91I CCANNNNNTGG 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 262
XceI RCATGY 2 cut(s) 64, 604
XmiI GTMKAC 1 cut(s) 131
XspI CTAG 1 cut(s) 632
Zsp2I ATGCAT 2 cut(s) 33, 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.