Rh5CG072800

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000650
Physical Location & Seq
Forward (+)
5426046 .. 5427153
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG072800.1

Sequence Viewer

Length: 1011 bp
ATGGAAACATTTATCATAGCAACCCACCGGCAGCTGAGTGCGATGCATCCCATCTACAGGCTTCTCAAACCTCACATGCAATACACAATGAAGATAAATGCATTGGCCTGTCAGTTTCTGATCAATTCTGAAGGAATAATTGAGTCTACTTTCACTGCTGGCAAACATAGCATGGAGATTAGTTGTGCTGCATATCGAGACTGGTGGCGTTTTGACCTTGAGGGCCTTCCTGCAGATCTCATCAGAAGAGGAATAGCAACACCAGACCCCAGTCAAGTCCATGGACTAAGACTACTGATTGAAGATTATCCTTACGCAACAGATGGACTCCTCATATGGGCAGCAATTGAGAGATTGGTTCAAACCTATGTCCATTATTACAATCCTGATACAGCTGCGGTTGATTCTGATACAGAACTGCAAGCCTGGTACAAGGAATGGATCAATTCAGGCCATGCCGACCTTCGCCATGCTAGCTGGTGGCCACAACTCTCTACTCCAGATGATCTTGCCTCCATTCTCACCACCATCATTTGGCTCTCATCAACATACCACGCTGCATTGAACTATGGGCAGTATCCTTATGGCGGATATGTCCCAACCCGCCCACCACACATGCGGAGATTACTGCCACAAGAACATGAACTAGAGTACGCTACTTTCATTGAGGATCCAGAGAAATATTTTTTATCATCATTGCCAAGTTTACTCGAAGCAACAAAGTATATGGCAGTGGCAGACATCATCTCAGCGCACTCCCCGGATGAGGAGTATATTGGGGAAAGAAAAGACTTGTCCACTTGGTCAGCTGACCCAGTTATTATTGAGGCATTCTACAGATTTTCAGTGGATATGAAGAGGATTGAAAAGAGATTGCACACAGAAATTCGAATTCAAGCCTACGCAACAGATGTGGGGCTGGGGTTTCACCATATGAGCTGCTCATGTCAAGCTCAGAACCCGGGGTTACAGCAAGAGGAATTCCTAATAGTATATCTGTTTGAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

336

Amino Acids

38.76

Weight (kDa)

5.25

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipoxygenase PF00305 1 - 294 2.2e-134 Lipoxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 534
AccI GTMKAC 1 cut(s) 146
AciI CCGC 4 cut(s) 398, 588, 604, 619
AclWI GGATC 3 cut(s) 449, 665, 678
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 3 cut(s) 885, 891, 980
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 2 cut(s) 431, 653
AfiI CCNNNNNNNGG 5 cut(s) 57, 337, 534, 587, 766
AgsI TTSAA 5 cut(s) 302, 362, 565, 866, 896
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 6 cut(s) 34, 395, 477, 809, 939, 953
AluI AGCT 6 cut(s) 34, 395, 477, 809, 939, 953
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 3 cut(s) 449, 665, 678
AlwNI CAGNNNCTG 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 961
AoxI GGCC 4 cut(s) 105, 223, 451, 482
ApeKI GCWGC 6 cut(s) 31, 188, 341, 395, 557, 939
ApoI RAATTY 3 cut(s) 885, 891, 980
AspLEI GCGC 1 cut(s) 754
AspS9I GGNCC 1 cut(s) 223
AsuC2I CCSGG 3 cut(s) 761, 962, 963
AsuHPI GGTGA 2 cut(s) 514, 920
AsuII TTCGAA 1 cut(s) 889
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 961
BalI TGGCCA 1 cut(s) 484
BamHI GGATCC 1 cut(s) 670
BbvI GCAGC 6 cut(s) 43, 175, 353, 382, 544, 926
BccI CCATC 3 cut(s) 59, 317, 536
BciT130I CCWGG 1 cut(s) 427
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 3 cut(s) 761, 962, 963
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 2 cut(s) 474, 647
BfmI CTRYAG 3 cut(s) 55, 231, 835
BfuI GTATCC 1 cut(s) 588
BglII AGATCT 1 cut(s) 235
BisI GCNGC 6 cut(s) 32, 189, 342, 396, 558, 940
BlsI GCNGC 6 cut(s) 33, 190, 343, 397, 559, 941
Bme1390I CCNGG 4 cut(s) 427, 761, 962, 963
BmeT110I CYCGRG 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 4 cut(s) 427, 761, 962, 963
BmrI ACTGGG 2 cut(s) 264, 809
BmsI GCATC 2 cut(s) 33, 55
BmtI GCTAGC 1 cut(s) 477
BmuI ACTGGG 2 cut(s) 264, 809
BoxI GACNNNNGTC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 889
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 3 cut(s) 761, 962, 963
BsaJI CCNNGG 4 cut(s) 280, 759, 961, 962
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 337, 534, 587, 766
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 3 cut(s) 206, 270, 815
Bse3DI GCAATG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 4 cut(s) 280, 759, 961, 962
BseGI GGATG 2 cut(s) 46, 769
BseLI CCNNNNNNNGG 5 cut(s) 57, 337, 534, 587, 766
BseMI GCAATG 1 cut(s) 695
BseMII CTCAG 3 cut(s) 26, 762, 968
BseNI ACTGG 3 cut(s) 206, 270, 815
BseRI GAGGAG 2 cut(s) 320, 782
BseXI GCAGC 6 cut(s) 43, 175, 353, 382, 544, 926
BseYI CCCAGC 1 cut(s) 919
BshFI GGCC 4 cut(s) 107, 225, 453, 484
BsiHKCI CYCGRG 1 cut(s) 961
BsiSI CCGG 3 cut(s) 28, 761, 962
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 5 cut(s) 57, 337, 534, 587, 766
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 4 cut(s) 107, 225, 453, 484
BsoBI CYCGRG 1 cut(s) 961
Bsp119I TTCGAA 1 cut(s) 889
Bsp143I GATC 5 cut(s) 120, 235, 441, 505, 670
Bsp19I CCATGG 1 cut(s) 280
BspACI CCGC 4 cut(s) 398, 588, 604, 619
BspANI GGCC 4 cut(s) 107, 225, 453, 484
BspCNI CTCAG 3 cut(s) 27, 761, 967
BspLI GGNNCC 1 cut(s) 672
BspMAI CTGCAG 1 cut(s) 235
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 449, 665, 678
BspT104I TTCGAA 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 695
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 3 cut(s) 206, 270, 815
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 4 cut(s) 280, 759, 961, 962
BssMI GATC 5 cut(s) 120, 235, 441, 505, 670
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 427
Bst6I CTCTTC 2 cut(s) 241, 851
BstBI TTCGAA 1 cut(s) 889
BstC8I GCNNGC 3 cut(s) 160, 423, 475
BstDEI CTNAG 4 cut(s) 35, 287, 748, 954
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 2 cut(s) 46, 769
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 5 cut(s) 123, 238, 444, 508, 673
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 5 cut(s) 120, 235, 441, 505, 670
BstMWI GCNNNNNNNGC 2 cut(s) 168, 474
BstNI CCWGG 1 cut(s) 427
BstNSI RCATGY 2 cut(s) 79, 619
BstPAI GACNNNNGTC 1 cut(s) 270
BstSCI CCNGG 4 cut(s) 425, 759, 960, 961
BstSFI CTRYAG 3 cut(s) 55, 231, 835
BstV1I GCAGC 6 cut(s) 43, 175, 353, 382, 544, 926
BstX2I RGATCY 2 cut(s) 235, 670
BstYI RGATCY 2 cut(s) 235, 670
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 4 cut(s) 107, 225, 453, 484
BtgI CCRYGG 1 cut(s) 280
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 46, 769
BtsI GCAGTG 2 cut(s) 153, 738
BtsIMutI CAGTG 3 cut(s) 153, 738, 852
Cac8I GCNNGC 3 cut(s) 160, 423, 475
CaiI CAGNNNCTG 1 cut(s) 118
CfoI GCGC 1 cut(s) 754
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 223
Cfr9I CCCGGG 1 cut(s) 961
Csp6I GTAC 2 cut(s) 430, 652
CspCI CAANNNNNGTGG 2 cut(s) 894, 929
CviAII CATG 8 cut(s) 76, 172, 281, 455, 470, 616, 641, 945
CviQI GTAC 2 cut(s) 430, 652
DdeI CTNAG 4 cut(s) 35, 287, 748, 954
DpnI GATC 5 cut(s) 122, 237, 443, 507, 672
DpnII GATC 5 cut(s) 120, 235, 441, 505, 670
EaeI YGGCCR 1 cut(s) 482
Eam1104I CTCTTC 2 cut(s) 241, 851
EarI CTCTTC 2 cut(s) 241, 851
EciI GGCGGA 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 961
EcoO109I RGGNCCY 1 cut(s) 223
EcoRI GAATTC 2 cut(s) 891, 980
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 280
EcoT22I ATGCAT 2 cut(s) 48, 103
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 8 cut(s) 79, 175, 284, 458, 473, 619, 644, 948
FaqI GGGAC 1 cut(s) 581
FatI CATG 8 cut(s) 75, 171, 280, 454, 469, 615, 640, 944
FauI CCCGC 1 cut(s) 611
FauNDI CATATG 2 cut(s) 335, 933
FbaI TGATCA 1 cut(s) 120
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 6 cut(s) 32, 189, 342, 396, 558, 940
FokI GGATG 2 cut(s) 33, 776
Fsp4HI GCNGC 6 cut(s) 32, 189, 342, 396, 558, 940
FspBI CTAG 2 cut(s) 474, 647
GlaI GCGC 1 cut(s) 753
GluI GCNGC 6 cut(s) 32, 189, 342, 396, 558, 940
GsaI CCCAGC 1 cut(s) 923
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 4 cut(s) 107, 225, 453, 484
HapII CCGG 3 cut(s) 28, 761, 962
HhaI GCGC 1 cut(s) 754
Hin1II CATG 8 cut(s) 79, 175, 284, 458, 473, 619, 644, 948
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HinfI GANTC 3 cut(s) 143, 327, 404
HpaII CCGG 3 cut(s) 28, 761, 962
HphI GGTGA 2 cut(s) 514, 920
Hpy166II GTNNAC 3 cut(s) 147, 707, 798
Hpy188I TCNGA 5 cut(s) 120, 130, 245, 409, 957
Hpy188III TCNNGA 4 cut(s) 197, 386, 500, 674
Hpy8I GTNNAC 3 cut(s) 147, 707, 798
HpyAV CCTTC 3 cut(s) 125, 236, 473
HpyCH4V TGCA 8 cut(s) 46, 79, 101, 191, 233, 421, 560, 877
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 474
HpyF3I CTNAG 4 cut(s) 35, 287, 748, 954
Hsp92II CATG 8 cut(s) 79, 175, 284, 458, 473, 619, 644, 948
HspAI GCGC 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 5 cut(s) 120, 235, 441, 505, 670
Lsp1109I GCAGC 6 cut(s) 43, 175, 353, 382, 544, 926
LweI GCATC 2 cut(s) 33, 55
MaeI CTAG 2 cut(s) 474, 647
MaeIII GTNAC 1 cut(s) 966
MalI GATC 5 cut(s) 122, 237, 443, 507, 672
MboI GATC 5 cut(s) 120, 235, 441, 505, 670
MboII GAAGA 4 cut(s) 103, 258, 314, 868
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 235, 670
MlsI TGGCCA 1 cut(s) 484
MluCI AATT 7 cut(s) 124, 138, 345, 445, 885, 891, 980
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 2 cut(s) 152, 321
Mox20I TGGCCA 1 cut(s) 484
Mph1103I ATGCAT 2 cut(s) 48, 103
MscI TGGCCA 1 cut(s) 484
Msp20I TGGCCA 1 cut(s) 484
MspA1I CMGCKG 3 cut(s) 34, 395, 809
MspI CCGG 3 cut(s) 28, 761, 962
MspR9I CCNGG 4 cut(s) 427, 761, 962, 963
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 168, 474
NciI CCSGG 3 cut(s) 761, 962, 963
NcoI CCATGG 1 cut(s) 280
NdeI CATATG 2 cut(s) 335, 933
NdeII GATC 5 cut(s) 120, 235, 441, 505, 670
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 8 cut(s) 79, 175, 284, 458, 473, 619, 644, 948
NlaIV GGNNCC 1 cut(s) 672
NsiI ATGCAT 2 cut(s) 48, 103
NspI RCATGY 2 cut(s) 79, 619
NspV TTCGAA 1 cut(s) 889
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 6 cut(s) 33, 190, 343, 397, 559, 941
PleI GAGTC 2 cut(s) 151, 321
PpsI GAGTC 2 cut(s) 151, 321
PshAI GACNNNNGTC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 425
PspFI CCCAGC 1 cut(s) 919
PspGI CCWGG 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 118
PsuI RGATCY 2 cut(s) 235, 670
PvuII CAGCTG 3 cut(s) 34, 395, 809
RsaI GTAC 2 cut(s) 431, 653
RsaNI GTAC 2 cut(s) 430, 652
SatI GCNGC 6 cut(s) 32, 189, 342, 396, 558, 940
Sau3AI GATC 5 cut(s) 120, 235, 441, 505, 670
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 2 cut(s) 152, 321
ScrFI CCNGG 4 cut(s) 427, 761, 962, 963
SfaNI GCATC 2 cut(s) 33, 55
SfcI CTRYAG 3 cut(s) 55, 231, 835
SfuI TTCGAA 1 cut(s) 889
SmaI CCCGGG 1 cut(s) 963
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 7 cut(s) 124, 138, 345, 445, 885, 891, 980
SsiI CCGC 4 cut(s) 398, 588, 604, 619
SspI AATATT 1 cut(s) 683
SspMI CTAG 2 cut(s) 474, 647
StyD4I CCNGG 4 cut(s) 425, 759, 960, 961
StyI CCWWGG 1 cut(s) 280
TaqI TCGA 3 cut(s) 196, 711, 889
TasI AATT 7 cut(s) 124, 138, 345, 445, 885, 891, 980
TfiI GAWTC 1 cut(s) 404
TscAI CASTG 3 cut(s) 160, 738, 852
TseI GCWGC 6 cut(s) 31, 188, 341, 395, 557, 939
TspDTI ATGAA 4 cut(s) 104, 652, 657, 869
TspMI CCCGGG 1 cut(s) 961
TspRI CASTG 3 cut(s) 160, 738, 852
Van91I CCANNNNNTGG 1 cut(s) 534
XapI RAATTY 3 cut(s) 885, 891, 980
XceI RCATGY 2 cut(s) 79, 619
XmaI CCCGGG 1 cut(s) 961
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 2 cut(s) 474, 647
Zsp2I ATGCAT 2 cut(s) 48, 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.